BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493564
Length=1648
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13510.1 | Symbols: AMT1;1, ATAMT1, ATAMT1;1 | ammonium tran... 2311 0.0
AT4G13505.1 | Symbols: | other RNA | chr4:7858000-7859691 REVE... 2037 0.0
AT3G24300.1 | Symbols: AMT1;3, ATAMT1;3 | ammonium transporter ... 793 0.0
> AT4G13510.1 | Symbols: AMT1;1, ATAMT1, ATAMT1;1 | ammonium transporter
1;1 | chr4:7858183-7859918 FORWARD LENGTH=1736
Length=1736
Score = 2311 bits (1251), Expect = 0.0
Identities = 1450/1549 (94%), Gaps = 2/1549 (0%)
Strand=Plus/Plus
Query 1 TCTTCTTCTCTAATCTCTCAACATGTCTTGCTCGGTGACCGAACTCGCCGTCTTGTTAGG 60
||||||||||||| ||||||||||||||||||||| ||||| ||||| ||| |||| ||
Sbjct 16 TCTTCTTCTCTAAACTCTCAACATGTCTTGCTCGGCCACCGATCTCGCTGTCCTGTTGGG 75
Query 61 TCCCAATGCCACGGAGGCTGCCAACTACATCTGTGGCCAGCTAAGCGTCGTCGACAACAA 120
||| |||||||||| ||| ||||||||||||||||||||| || ||| |||| |||||||
Sbjct 76 TCCTAATGCCACGGCGGCGGCCAACTACATCTGTGGCCAGTTAGGCGACGTCAACAACAA 135
Query 121 GTTCATCGACGCCGCTTTCGCCATAGACACCACTTACCTCCTCTTCTCCGCTTACCTTGT 180
|| |||||| |||||||||| ||||||| ||||||||| ||||||||||| ||||||||
Sbjct 136 ATTTATCGACACCGCTTTCGCTATAGACAACACTTACCTTCTCTTCTCCGCCTACCTTGT 195
Query 181 CTTCTCTATGCAGCTTGGCTTCGCTATGCTCTGTGCCGGTTCCGTAAGAGCCAAGAATAC 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 196 CTTCTCTATGCAGCTTGGCTTCGCTATGCTCTGTGCCGGTTCCGTGAGAGCCAAGAATAC 255
Query 241 GATGAACATCATGCTTACCAACGTTCTTGATGCTGCGGCCGGAGGTCTCTTTTACTATCT 300
||||||||||||||||||||||| ||||| ||||| ||||| |||||||| || |||||
Sbjct 256 TATGAACATCATGCTTACCAACGTCCTTGACGCTGCAGCCGGTGGTCTCTTCTATTATCT 315
Query 301 ATTTGGCTATGCTTTTGCCTTTGGATCTCCGTCCAATGGTTTCATTGGTAAACACTACTT 360
|||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 316 GTTTGGCTACGCCTTTGCCTTTGGATCTCCGTCCAATGGTTTCATCGGTAAACACTACTT 375
Query 361 TGGTCTCAAAGATATCCCCACGGCCACTGCTGATTATTCCAATTTTCTCTACCAATGGGC 420
|||||||||||| |||||||||||| ||||||| || ||||| |||||||||||||||||
Sbjct 376 TGGTCTCAAAGACATCCCCACGGCCTCTGCTGACTACTCCAACTTTCTCTACCAATGGGC 435
Query 421 CTTTGCTATAGCCGCGGCTGGAATCACGAGTGGTTCGATCGCTGAACGGACTCAGTTCGT 480
|||||| || || |||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 436 CTTTGCAATCGCTGCGGCTGGAATCACAAGTGGCTCGATCGCTGAACGGACACAGTTCGT 495
Query 481 GGCTTACCTAATCTATTCCTCTTTCTTAACCGGGTTTGTTTACCCGGTCGTGTCTCACTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 496 GGCTTACCTAATCTATTCCTCTTTCTTAACCGGGTTTGTTTACCCGGTCGTCTCTCACTG 555
Query 541 GTTCTGGTCGGTTGATGGATGGGCCAGTCCGTTCCGGACCGATGGAGATTTGCTTTTCAG 600
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 556 GTTCTGGTCAGTTGATGGATGGGCCAGCCCGTTCCGTACCGATGGAGATTTGCTTTTCAG 615
Query 601 AACCGGAGCGATCGATTTCGCTGGCTCCGGTGTTGTTCATATGGTCGGAGGTATCGCTGG 660
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 616 CACCGGAGCGATAGATTTCGCTGGGTCCGGTGTTGTTCATATGGTCGGAGGTATCGCTGG 675
Query 661 ACTCTGGGGAGCGTTCATTGAAGGACCACGACTCGGCCGGTTCGATAACGGTGGCCGTGC 720
||||||||| ||| |||| ||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 676 ACTCTGGGGTGCGCTCATCGAAGGTCCACGACTTGGCCGGTTCGATAACGGAGGCCGTGC 735
Query 721 CATCGCTCTTCGTGGCCACTCGGCGTCACTTGTTGTCCTTGGAACATTCCTCCTTTGGTT 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 736 CATCGCTCTTCGTGGCCACTCGGCGTCACTTGTTGTCCTTGGAACATTCCTCCTCTGGTT 795
Query 781 TGGATGGTACGGATTCAACCCCGGTTCTTTCAACAAAATCCTAGTCACATACCAAACAGG 840
||||||||||||||| ||||||||||| |||||||| ||||||||||| ||| | |||||
Sbjct 796 TGGATGGTACGGATTTAACCCCGGTTCCTTCAACAAGATCCTAGTCACGTACGAGACAGG 855
Query 841 AACGTATCAA-GGCCAGTGGAGCGCGGTCGGACGGACGGCCGTCACAACAACCTTAGCCG 899
|| || ||| |||||||||||||||||||||||||| || ||||||||||| ||||| |
Sbjct 856 CACATA-CAACGGCCAGTGGAGCGCGGTCGGACGGACAGCTGTCACAACAACGTTAGCTG 914
Query 900 GCTGCACCGCCGCGCTCACAACACTCTTTGGGAAGCGTCTCCTCTCGGGACATTGGAACG 959
|||||||||| ||||| ||||| || |||||||| ||||| |||||||||||||||||||
Sbjct 915 GCTGCACCGCGGCGCTGACAACCCTATTTGGGAAACGTCTACTCTCGGGACATTGGAACG 974
Query 960 TCACTGATGTATGCAACGGCCTCCTCGGAGGGTTTGCAGCCATAACTGGTGGCTGCTCAG 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 975 TCACTGATGTATGCAACGGCCTCCTCGGAGGGTTTGCAGCCATAACTGGTGGCTGCTCTG 1034
Query 1020 TCGTTGAGCCATGGGCGGCCATCATCTGCGGGTTCGTGGCGGCCCTTGTCCTCCTCGGAT 1079
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 1035 TCGTTGAGCCATGGGCTGCGATCATCTGCGGGTTCGTGGCGGCCCTAGTCCTCCTCGGAT 1094
Query 1080 GCAACAAGCTCGCGGAGAAGCTTAAATACGACGACCCGCTTGAGGCAGCACAGCTACACG 1139
||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 1095 GCAACAAGCTCGCTGAGAAGCTCAAATACGACGACCCTCTTGAGGCAGCACAACTACACG 1154
Query 1140 GTGGTTGCGGCGCGTGGGGACTAATATTCACAGCCCTTTTCGCTCAAGAAAAGTACTTGA 1199
|||||||||| |||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 1155 GTGGTTGCGGTGCGTGGGGACTAATATTCACGGCTCTCTTCGCTCAAGAAAAGTACTTGA 1214
Query 1200 ACCAGATTTACGGCAACAGACCCGGAAGGCCACACGGTTTGTTTATGGGCGGTGGAGGAA 1259
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 ACCAGATTTACGGCAACAAACCCGGAAGGCCACACGGTTTGTTTATGGGCGGTGGAGGAA 1274
Query 1260 AACTACTTGGAGCTCAGCTGATTCAGATCATTGTGATCACGGGTTGGGTAAGTGCGACCA 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 AACTACTTGGAGCTCAGCTGATTCAGATCATTGTGATCACGGGTTGGGTAAGTGCGACCA 1334
Query 1320 TGGGGACACTTTTCTTCATACTCAAGAAAATGAAATTGTTGCGGATATCGGCAGAGGATG 1379
||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||
Sbjct 1335 TGGGGACACTTTTCTTCATCCTCAAGAAAATGAAATTGTTGCGGATATCGTCCGAGGATG 1394
Query 1380 AGATGGCCGGTATGGATATGACCCGGCACGGTGGTTTTGCTTATATGTACTTTGATGATG 1439
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1395 AGATGGCCGGTATGGATATGACCAGGCACGGTGGTTTTGCTTATATGTACTTTGATGATG 1454
Query 1440 ATGAGTCTCACAAAGCCATTCAGCTTAGAAGAGTTGAGCCAAGATCTCCTTCTCCTTCTG 1499
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1455 ATGAGTCTCACAAAGCCATTCAGCTTAGGAGAGTTGAGCCACGATCTCCTTCTCCTTCTG 1514
Query 1500 GTGCTAATACTACTCCTACTCCGGtttgatttggatttttatttttatt 1548
||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1515 GTGCTAATACTACACCTACTCCGGTTTGATTTGGATTTTTACTTTTATT 1563
> AT4G13505.1 | Symbols: | other RNA | chr4:7858000-7859691 REVERSE
LENGTH=1625
Length=1625
Score = 2037 bits (1103), Expect = 0.0
Identities = 1258/1335 (94%), Gaps = 2/1335 (0%)
Strand=Plus/Minus
Query 161 CTCTTCTCCGCTTACCTTGTCTTCTCTATGCAGCTTGGCTTCGCTATGCTCTGTGCCGGT 220
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 CTCTTCTCCGCCTACCTTGTCTTCTCTATGCAGCTTGGCTTCGCTATGCTCTGTGCCGGT 1275
Query 221 TCCGTAAGAGCCAAGAATACGATGAACATCATGCTTACCAACGTTCTTGATGCTGCGGCC 280
||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||
Sbjct 1274 TCCGTGAGAGCCAAGAATACTATGAACATCATGCTTACCAACGTCCTTGACGCTGCAGCC 1215
Query 281 GGAGGTCTCTTTTACTATCTATTTGGCTATGCTTTTGCCTTTGGATCTCCGTCCAATGGT 340
|| |||||||| || ||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 1214 GGTGGTCTCTTCTATTATCTGTTTGGCTACGCCTTTGCCTTTGGATCTCCGTCCAATGGT 1155
Query 341 TTCATTGGTAAACACTACTTTGGTCTCAAAGATATCCCCACGGCCACTGCTGATTATTCC 400
||||| |||||||||||||||||||||||||| |||||||||||| ||||||| || |||
Sbjct 1154 TTCATCGGTAAACACTACTTTGGTCTCAAAGACATCCCCACGGCCTCTGCTGACTACTCC 1095
Query 401 AATTTTCTCTACCAATGGGCCTTTGCTATAGCCGCGGCTGGAATCACGAGTGGTTCGATC 460
|| ||||||||||||||||||||||| || || |||||||||||||| ||||| ||||||
Sbjct 1094 AACTTTCTCTACCAATGGGCCTTTGCAATCGCTGCGGCTGGAATCACAAGTGGCTCGATC 1035
Query 461 GCTGAACGGACTCAGTTCGTGGCTTACCTAATCTATTCCTCTTTCTTAACCGGGTTTGTT 520
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 GCTGAACGGACACAGTTCGTGGCTTACCTAATCTATTCCTCTTTCTTAACCGGGTTTGTT 975
Query 521 TACCCGGTCGTGTCTCACTGGTTCTGGTCGGTTGATGGATGGGCCAGTCCGTTCCGGACC 580
||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 974 TACCCGGTCGTCTCTCACTGGTTCTGGTCAGTTGATGGATGGGCCAGCCCGTTCCGTACC 915
Query 581 GATGGAGATTTGCTTTTCAGAACCGGAGCGATCGATTTCGCTGGCTCCGGTGTTGTTCAT 640
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 914 GATGGAGATTTGCTTTTCAGCACCGGAGCGATAGATTTCGCTGGGTCCGGTGTTGTTCAT 855
Query 641 ATGGTCGGAGGTATCGCTGGACTCTGGGGAGCGTTCATTGAAGGACCACGACTCGGCCGG 700
||||||||||||||||||||||||||||| ||| |||| ||||| |||||||| ||||||
Sbjct 854 ATGGTCGGAGGTATCGCTGGACTCTGGGGTGCGCTCATCGAAGGTCCACGACTTGGCCGG 795
Query 701 TTCGATAACGGTGGCCGTGCCATCGCTCTTCGTGGCCACTCGGCGTCACTTGTTGTCCTT 760
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 TTCGATAACGGAGGCCGTGCCATCGCTCTTCGTGGCCACTCGGCGTCACTTGTTGTCCTT 735
Query 761 GGAACATTCCTCCTTTGGTTTGGATGGTACGGATTCAACCCCGGTTCTTTCAACAAAATC 820
|||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 734 GGAACATTCCTCCTCTGGTTTGGATGGTACGGATTTAACCCCGGTTCCTTCAACAAGATC 675
Query 821 CTAGTCACATACCAAACAGGAACGTATCAA-GGCCAGTGGAGCGCGGTCGGACGGACGGC 879
|||||||| ||| | ||||| || || ||| |||||||||||||||||||||||||| ||
Sbjct 674 CTAGTCACGTACGAGACAGGCACATA-CAACGGCCAGTGGAGCGCGGTCGGACGGACAGC 616
Query 880 CGTCACAACAACCTTAGCCGGCTGCACCGCCGCGCTCACAACACTCTTTGGGAAGCGTCT 939
||||||||||| ||||| ||||||||||| ||||| ||||| || |||||||| |||||
Sbjct 615 TGTCACAACAACGTTAGCTGGCTGCACCGCGGCGCTGACAACCCTATTTGGGAAACGTCT 556
Query 940 CCTCTCGGGACATTGGAACGTCACTGATGTATGCAACGGCCTCCTCGGAGGGTTTGCAGC 999
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 ACTCTCGGGACATTGGAACGTCACTGATGTATGCAACGGCCTCCTCGGAGGGTTTGCAGC 496
Query 1000 CATAACTGGTGGCTGCTCAGTCGTTGAGCCATGGGCGGCCATCATCTGCGGGTTCGTGGC 1059
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 495 CATAACTGGTGGCTGCTCTGTCGTTGAGCCATGGGCTGCGATCATCTGCGGGTTCGTGGC 436
Query 1060 GGCCCTTGTCCTCCTCGGATGCAACAAGCTCGCGGAGAAGCTTAAATACGACGACCCGCT 1119
|||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 435 GGCCCTAGTCCTCCTCGGATGCAACAAGCTCGCTGAGAAGCTCAAATACGACGACCCTCT 376
Query 1120 TGAGGCAGCACAGCTACACGGTGGTTGCGGCGCGTGGGGACTAATATTCACAGCCCTTTT 1179
|||||||||||| ||||||||||||||||| |||||||||||||||||||| || || ||
Sbjct 375 TGAGGCAGCACAACTACACGGTGGTTGCGGTGCGTGGGGACTAATATTCACGGCTCTCTT 316
Query 1180 CGCTCAAGAAAAGTACTTGAACCAGATTTACGGCAACAGACCCGGAAGGCCACACGGTTT 1239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 315 CGCTCAAGAAAAGTACTTGAACCAGATTTACGGCAACAAACCCGGAAGGCCACACGGTTT 256
Query 1240 GTTTATGGGCGGTGGAGGAAAACTACTTGGAGCTCAGCTGATTCAGATCATTGTGATCAC 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 GTTTATGGGCGGTGGAGGAAAACTACTTGGAGCTCAGCTGATTCAGATCATTGTGATCAC 196
Query 1300 GGGTTGGGTAAGTGCGACCATGGGGACACTTTTCTTCATACTCAAGAAAATGAAATTGTT 1359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 195 GGGTTGGGTAAGTGCGACCATGGGGACACTTTTCTTCATCCTCAAGAAAATGAAATTGTT 136
Query 1360 GCGGATATCGGCAGAGGATGAGATGGCCGGTATGGATATGACCCGGCACGGTGGTTTTGC 1419
|||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 135 GCGGATATCGTCCGAGGATGAGATGGCCGGTATGGATATGACCAGGCACGGTGGTTTTGC 76
Query 1420 TTATATGTACTTTGATGATGATGAGTCTCACAAAGCCATTCAGCTTAGAAGAGTTGAGCC 1479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 75 TTATATGTACTTTGATGATGATGAGTCTCACAAAGCCATTCAGCTTAGGAGAGTTGAGCC 16
Query 1480 AAGATCTCCTTCTCC 1494
| |||||||||||||
Sbjct 15 ACGATCTCCTTCTCC 1
> AT3G24300.1 | Symbols: AMT1;3, ATAMT1;3 | ammonium transporter
1;3 | chr3:8805631-8807388 REVERSE LENGTH=1758
Length=1758
Score = 793 bits (429), Expect = 0.0
Identities = 1105/1425 (78%), Gaps = 71/1425 (5%)
Strand=Plus/Plus
Query 62 CCCAATGCCACGGAGGCTGCCAACTACATCTGTGGCCAGCTAAGCGTCGTCGACAACAAG 121
||||| ||||||| ||| ||| ||||||| || ||||| || || ||| ||||||||
Sbjct 86 CCCAACGCCACGGCGGCGGCCGACTACATTTGCGGCCAATTAGGCACCGTTAACAACAAG 145
Query 122 TTCATCGACGCCGCTTTCGCCATAGACACCACTTACCTCCTCTTCTCCGCTTACCTTGTC 181
|||| ||| || || ||||||||||||| ||| |||||||||||||| || |||||||||
Sbjct 146 TTCACCGATGCAGCCTTCGCCATAGACAACACCTACCTCCTCTTCTCTGCCTACCTTGTC 205
Query 182 TTCTCTATGCAGCTTGGCTTCGCTATGCTCTGTGCCGGTTCCGTAAGAGCCAAGAATACG 241
||| | |||||||| |||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct 206 TTCGCCATGCAGCTCGGCTTCGCTATGCTTTGTGCTGGTTCTGTTAGAGCCAAGAATACG 265
Query 242 ATGAACATCATGCTTACCAACGTTCTTGATGCTGCGGCCGGAGGTCTCTTTTACTATCTA 301
|||||||||||||||||||| || ||||| ||||| |||||||| ||||| ||||||||
Sbjct 266 ATGAACATCATGCTTACCAATGTCCTTGACGCTGCAGCCGGAGGACTCTTCTACTATCTC 325
Query 302 TTTGGCTATGCTTTTGCCTTTGGATC-TCCGTCC-AATGGTTTCATTGGTAA-ACACTAC 358
||||| || || |||||||||||| ||| ||| || |||| |||||| || |||| ||
Sbjct 326 TTTGGTTACGCCTTTGCCTTTGGAGGATCC-TCCGAAGGGTT-CATTGG-AAGACACAAC 382
Query 359 TTTGGTCTCAAAGA-TATCCCCACGGCCACTGCTGATTATTCCAATT-TTC-TCTACCAA 415
|||| ||| | ||| | ||| || |||| |||||||| || || ||| ||||||||
Sbjct 383 TTTGCTCTTAGAGACTTTCCG-ACTCCCACAGCTGATTACTCT--TTCTTCCTCTACCAA 439
Query 416 TGGGCCTTTGCTATAGCCGCGGCTGGAATCACGAGTGGTTCGATCGCTGA-ACGGACTCA 474
||||| || || || || || ||||||||||| |||||||||||||| || | |||||||
Sbjct 440 TGGGCGTTCGCAATCGCGGCCGCTGGAATCACAAGTGGTTCGATCGCAGAGA-GGACTCA 498
Query 475 GTTCGTGGCTTACCTAATCTATTCCTCTTTCTTAACCGGGTTTGTTTACCCGGTCGTGTC 534
||||||||||||| | || || || |||||||||||||| |||||||||||||| || ||
Sbjct 499 GTTCGTGGCTTACTTGATATACTCTTCTTTCTTAACCGGATTTGTTTACCCGGTTGTCTC 558
Query 535 TCACTGGTTCTGGTCGGTTGATGGATGGGCCAGTCCGTTCCGGACCGATGGA-GATTTGC 593
||||||||| ||||| ||||||||||||||||| || || | | ||| ||| |
Sbjct 559 TCACTGGTTTTGGTCCCCGGATGGATGGGCCAGTCCCTTTCGTTCAGC-GGATGATC-GT 616
Query 594 TT-TTCAGAACCGGAGCGATCGA-TTTCGCTGGCTCCGGTGTTGTTCATATGGTCGGAGG 651
|| || || |||||||| || || ||| |||||||||||||||||||| ||||| || ||
Sbjct 617 TTGTTTAGCACCGGAGCCATTGACTTT-GCTGGCTCCGGTGTTGTTCACATGGTTGGTGG 675
Query 652 TATCGCTGGACTCTGGGGAGCG-TTCATTGAAGGACCACGAC-TCGGCCGGTTCGATAAC 709
|| || || | ||||| || || |||||||| || || | | || |||||||| ||
Sbjct 676 CATAGCAGGTTTATGGGGTGCTCTT-ATTGAAGGTCCTCGTCGT-GGTCGGTTCGAGAAA 733
Query 710 GGTGGCCGTGCCATCGCTCTTCGTGGCCACTCGGCGTCACTTGTTGTCCTT-GGAACATT 768
||||| || || || ||||| || |||||||| || || || || ||| || ||||| ||
Sbjct 734 GGTGGTCGCGCTATTGCTCTGCGCGGCCACTCTGCCTCGCTAGTAGTC-TTAGGAACCTT 792
Query 769 CCTCCTTTGGTTTGGATGGTACGGATTCAACCCCGGTTCTTTCAACAAA-ATCCTAGT-C 826
|||||| |||||||||||||| || |||||||||||||| |||| | || || || || |
Sbjct 793 CCTCCTATGGTTTGGATGGTATGGTTTCAACCCCGGTTCCTTCA-CTAAGATACTCGTTC 851
Query 827 ACATACCAAA-CAGGAACGTATCAA-GGCCAGTGGAGCGCGG-TCGGACGGACGGCCGTC 883
| || || | || | | | | ||||| ||||||| | |||| || || || ||
Sbjct 852 -CGTAT-AATTCTGGTTCCAA-CTACGGCCAATGGAGCG-GAATCGGCCGTACAGCGGTT 907
Query 884 A-CAACA-AC-CTTAGCCGGCTGCACCGCCGCGCTCACAACACTCTTTGGGAAGCGTCTC 940
| || || || || || | ||||| || || || || ||||||||||| || ||||||
Sbjct 908 AACACCACACTCTCAG--GA-TGCACAGCAGCTCTAACCACACTCTTTGGTAAACGTCTC 964
Query 941 CTCTCGGGACATTGGAACGTCACTGATGTATGCAACGGCCTCCTCGGAGGGTTTGCAGCC 1000
|| || || || |||||||| || || || |||||||| | ||||| |||||||| |||
Sbjct 965 CTATCAGGCCACTGGAACGTAACGGACGTTTGCAACGGGTTACTCGGTGGGTTTGCGGCC 1024
Query 1001 ATAACTGGTGGCTGCTCAGTCGTTGAGCCATGGGCGGCCATCATCTGCGGGTTCGTGGCG 1060
||||| | || ||||| ||||| ||||||||||| || || | ||||| ||| ||||
Sbjct 1025 ATAACCGCAGGTTGCTCCGTCGTAGAGCCATGGGCAGCGATTGTGTGCGGCTTCATGGCT 1084
Query 1061 GCCCTTGTCCTCCTCGGATGCAACAAGCTCGCGGAGAA-GCTTA-AATACGACGACCCGC 1118
| | ||||| ||||||||||||||||||||||| | | | |||| || || || |
Sbjct 1085 TCTGTCGTCCTTATCGGATGCAACAAGCTCGCGGAGCTTG-T-ACAATATGATGATCCAC 1142
Query 1119 TTGAGGCAGCACAGCTACACGGTGGTTGCGGCGCGTGGGGACTAATATTCACAGCCCT-T 1177
| |||||||| || ||||| || || || ||||||||||| | |||||| || | |
Sbjct 1143 TCGAGGCAGCCCAACTACATGGAGGGTGTGGCGCGTGGGGGTTGATATTCGTAGGATTGT 1202
Query 1178 TTCGCTCAA-GAAAAGTA-CTTGAACCAGATTTACGGCAACAGACCCGG-AAGGCCACAC 1234
|| || ||| || ||||| || ||| || |||| ||| || ||||| ||||||| |
Sbjct 1203 TT-GC-CAAAGAGAAGTATCTA-AACGAGGTTTATGGCGCCAC-CCCGGGAAGGCCATAT 1258
Query 1235 GGTTTGTTTATGGGCGGTGGAGGAAAACTACTTGG-AGCTCAGCTGATTCAGAT-CATTG 1292
|| | ||||||||||| ||||| || || |||| ||| || || |||| || | |||
Sbjct 1259 GGACTATTTATGGGCGGAGGAGGGAAGCTG-TTGGGAGCACAATTGGTTCAAATAC-TTG 1316
Query 1293 TGATCACGGGTTGGGTAAGTGCGACCATGGGGACACTTTTCTTCATACTCAAGAAAA-TG 1351
|||| || ||||| ||||| || ||||| ||||| |||||||| ||||| || |
Sbjct 1317 TGATTGTAGGATGGGTTAGTGCCACAATGGGAACACTCTTCTTCATCCTCAA-AAGGCTC 1375
Query 1352 AAAT-TG-TTGCGGATATCGGCAG-AGGATGAGATGGCC-GGTATGGATATGACCCGGCA 1407
|| | || || |||| |||| || || |||| ||| | || ||||||||||| || ||
Sbjct 1376 AA-TCTGCTTA-GGATCTCGG-AGCAGCATGAAATG-CAAGGGATGGATATGACACGTCA 1431
Query 1408 CGGTGGTTTTGCTTATATGTACTTTGAT---GATGATGAGTCTCA 1449
|||||| ||||||||||| ||| |||| ||||||||||||||
Sbjct 1432 CGGTGGCTTTGCTTATATCTACCATGATAATGATGATGAGTCTCA 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81425283990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5