BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493566
Length=1033
Score E
Sequences producing significant alignments: (Bits) Value
AT5G32440.3 | Symbols: | Ubiquitin system component Cue protei... 1483 0.0
> AT5G32440.3 | Symbols: | Ubiquitin system component Cue protein
| chr5:12076893-12078603 FORWARD LENGTH=1126
Length=1126
Score = 1483 bits (803), Expect = 0.0
Identities = 933/992 (94%), Gaps = 23/992 (2%)
Strand=Plus/Plus
Query 27 TGCGAACATCTTTAAGATCCGATAAAAGTCTTGTTCGAGAGATCTGAAGGAAGAAGAAGA 86
|||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||
Sbjct 44 TGCGAACATCTTTAAGATCCGATAAAAGACTTGTTTGAGAGATCTCAAGGAAGAAGAAGA 103
Query 87 A-GGGGGAAGCAGATAACATGTCTGCGATTGTTTGCGGGAAGAGATCTCTGTTTGAGGAC 145
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 104 AGGGGGGAAGCAGATAACATGTCTGCGATTGTTTGCGGGAAGAGATCTCTGTTCGAGGAC 163
Query 146 TTAGCCGCCGCTTCTCCTCCCGTCTCCAAGAAACTCCGTTGCTTTTCTTCGTCTTCTCCG 205
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 164 TTAGCCGCCGCTTCTCCTCCCGTCTCCAAGAAACTCCGTTGCTTTTCTTCATCTTCTTCG 223
Query 206 GCTCGTTTTTCTCATCCGATTCCGCCTTCGTCTTCGCTTCTTCTCGATCACCTCGCCGCG 265
|||||||||||| ||||||||| ||||| || || ||||||||||||||||||||||||
Sbjct 224 TCTCGTTTTTCTCCTCCGATTCCTCCTTCTTCCTCACTTCTTCTCGATCACCTCGCCGCG 283
Query 266 ATTTTCCCCGATATGGATAAGAAGATTCTTGAGAGGGCAATCGAGGAATGTGGTGATGAT 325
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 284 ATTTTCCCCGATATGGATAAGCAGATTCTTGAGAGGGCAATCGAGGAATGTGGAGATGAC 343
Query 326 CTTGATTCAGCCATTAGATGTTTGAATCAGCTTCGTTTAGAATCTGCCAATAAGAATTCA 385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 CTTGATTCAGCCATTAGATGTTTGAATCAGCTTCGTTTAGAATCTGCCAATAAGAATTCT 403
Query 386 GATTCTGCTACAAACCAATCTCCTGTTGTAATCCAGGAAGCAAATGTTGAACCTCAGCAG 445
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 404 GATTCTGCTACAAACCAATCTCCTGTTGTAATCCAGGAACCAAATGTTGAACCTCAACAG 463
Query 446 CAA-G--GATCAGCCAAGGAGGAAGCACATGTCTTGAACTTGGATGGTACAGAGTGGGTT 502
||| | ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 464 CAAGGTAGATCAGCCAAGGAGGAACCAAATGTCTTGAACTTGGATGGTACAGAGTGGGTT 523
Query 503 GAGCTTTTTGTTAGGGAAATGATGAATGCTTCTGACATGAAAGACGCCAAAGCCCGTGCT 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 GAGCTTTTTGTTAGGGAAATGATGAATGCTTCTGACATGAAAGACGCCAAAGCCCGTGCT 583
Query 563 GCAAGAGCATTGGAAGCTTTGGAGAAGTCAATCAATGCACGTACTGGTACTGAAGCAATG 622
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 584 GCAAGAGCATTGGAAGCTTTGGAGAAGTCAATTAATGCACGTACTGGTACTGACGCAATG 643
Query 623 CAAAATCTCCAACAGGAAAACATGATGCTGAAGCAACAATTAGAAGCCATTGTACAGGAA 682
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 644 CAAAATCTCCAACAGGAAAACATGATGCTGAAGCAGCAATTAGAAGCTATTGTACAGGAA 703
Query 683 AACAGTTTACTAAAACGAGCGGTAGTGACGCAGCAGAAGCGGCAGAGAGAATCAGAAGAC 742
||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 704 AACAGTTTACTGAAACGAGCGGTAGTGACACAGCAGAAGCGGCAAAGAGAATCGGAAGAC 763
Query 743 CAAAGTCAGGAATTGCAGCATTTGAGGCAGCTAGTCACTCAATACCAGGAACAGTTGAGA 802
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 764 CAAAGTCAGGAATTGCAGCATCTGAGGCAGCTAGTCACTCAATACCAGGAACAGTTGAGA 823
Query 803 ACTTTAGAGGTGAACAACTATGCTCTGACGCTTCATCTGAAACAAGCTCAGCAAAACAGT 862
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 ACTTTAGAGGTGAATAACTATGCTCTGACGCTTCATCTGAAACAAGCTCAGCAAAACAGT 883
Query 863 TCCATCCCGGGCCGGTACCATCCAGACGTCTTCTAATACTTTGTGAG----T-GT-T--T 914
||||||||||| ||||||||||||||||||||||||||||||||||| | || | |
Sbjct 884 TCCATCCCGGGGCGGTACCATCCAGACGTCTTCTAATACTTTGTGAGGCCCTCGTATCAT 943
Query 915 -------CCAATGTATTTTTCTCTGTTGGTTTGTGACTATT-ATATACGAAGTCTGG-AA 965
||| |||||||||||||||||||||||||||||| ||||| | || || ||
Sbjct 944 TTTGTTTCCAGTGTATTTTTCTCTGTTGGTTTGTGACTATTTATATAT-AT-TCGGGGAA 1001
Query 966 TCAAAACTGTGtttttttGTTGTTGTTGTTGT 997
||||||||||||| ||||||||||||||||||
Sbjct 1002 TCAAAACTGTGTTCTTTTGTTGTTGTTGTTGT 1033
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50636020176
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5