BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493567
Length=958
Score E
Sequences producing significant alignments: (Bits) Value
AT5G32450.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) fami... 1483 0.0
> AT5G32450.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:12079611-12081573 FORWARD LENGTH=1156
Length=1156
Score = 1483 bits (803), Expect = 0.0
Identities = 910/961 (95%), Gaps = 10/961 (1%)
Strand=Plus/Plus
Query 2 GACGTCTGGGCTGTTCAAAATC-TTTCTTCTCTCTT-GGTCAAGAA--ATTATTCTCTCG 57
|||| ||||||||||||||||| ||||||||||||| ||||| || ||||||||||||
Sbjct 11 GACGGCTGGGCTGTTCAAAATCATTTCTTCTCTCTTCCGTCAA-AATTATTATTCTCTCG 69
Query 58 CAGTCGTCAAGAGCTAGCTTCCTTCTACAACAATGCAGACAACGAGAAGTGTTCAAGTAA 117
|||||||| | || ||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 70 CAGTCGTC-A-AG--AGCTT-CTTCTACAACAATGCAGACGACGAGAAGTGTTCAAGTAA 124
Query 118 ATAATGTCTCAGATCTAGCCACGGAGAGGGAGATTCACGAGTTTTTCTCCTTCTCAGGCG 177
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 125 ATAATGTCTCAGATCTAGCCACAGAGAGAGAGATTCACGAGTTTTTCTCCTTCTCAGGCG 184
Query 178 ACATAGAACACATTGAAATCCAAAAAGAAGTTGGCCAGTCTCGAATCGCATTTGTTACAT 237
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 185 ACATAGAACACATTGAAATCCAAAAAGAATTTGGACAGTCTCGAATCGCATTTGTTACAT 244
Query 238 TTACTGACCCCAAAGCCCTTGAAATTGCCTTGTTATTATCGGGTGCGACGATTGTGGACC 297
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 245 TTACTGATCCCAAAGCCCTCGAAATTGCCTTGTTATTATCGGGTGCGACGATTGTGGACC 304
Query 298 AGATTGTTACAATAACTCGAGCTGAAAACTATGTTCAGAGGCGTGAGATGCAGGAAGTAA 357
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 305 AGATTGTTACAATAACACGAGCTGAAAACTATGTTCAGAGGCGTGAGACACAGGAAGTAA 364
Query 358 GAATGGTGGACAACGCGATGCCCCTTGGTCTTCCAGAGAGTACTACACAGACCAAAACTA 417
||||| |||||||||||||||| |||||||||| |||||||||||||||||| ||||| |
Sbjct 365 GAATGTTGGACAACGCGATGCCTCTTGGTCTTCAAGAGAGTACTACACAGACTAAAACGA 424
Query 418 CCGCGGATGGCAATAGTAGAGCATATGTTAGCAAAGCACAAGATGTGGTGGCAACTGTTT 477
| |||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 425 ACATGGATGGTAATAGTAGAGCATACGTTAGCAAAGCACAAGATGTGGTGGCAACGGTTT 484
Query 478 TGGCAAAAGGTTCTGCTCTTGGACAAGATGCAGTGAATAAAGCCAAGGCTTTCGACCAAA 537
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 485 TGGCAAAAGGGTCTGCTCTTGGACAAGATGCAGTGAATAAAGCCAAGGCTTTCGACGAAA 544
Query 538 AGCATCAATTAAGAGCCAATGCTTCTGCCAAAGTTTCATCTTTTGACAAGCGAGTTGGGC 597
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 545 AGCACCAATTAAGAGCCAATGCTTCTGCTAAAGTTTCATCTTTTGACAAGCGAGTTGGTC 604
Query 598 TTACTGAGAAGTTAACTGTTGGTATTTCTGCCGTTAACGAGAAAGTAAAATCTGTTGATC 657
|||||||||||||| |||||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 605 TTACTGAGAAGTTATCTGTTGGTATTTCTGCTGTTAATGAGAAAGTTAAATCTGTTGATC 664
Query 658 AAAAGCTTCAGGTCTCCGATAAAACCATGGCAGCAATATTTGCAGCCGAGAAGAAATTAA 717
|||||||||| |||||||||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 665 AAAAGCTTCAAGTCTCCGATAAAACTATGGCAGCAATATTTGCAGCCGAGAGGAAGTTAA 724
Query 718 ACGACACTGGTTCAGCTGTCAAATCAAGCAGGTACGTGACTGCTGGAGCTGCTTGGTTTA 777
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 ACGACACGGGTTCAGCTGTCAAATCAAGCAGGTACGTGACTGCTGGAGCTGCTTGGTTTA 784
Query 778 GTGGTGCTTTTAGTAAAGTGGCGAGAGTAGGTCAGGTTGCTGGCTCAAAAACCAAAGAGA 837
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 GTGGCGCTTTTAGTAAAGTGGCGAGAGTAGGTCAGGTTGCTGGCTCAAAAACCAAAGAGA 844
Query 838 AGTTCAATCTAGCCGTCTCAAATATGAGTTCCAAGGATACACCGATTGCTGTATAATAAA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 AGTTCAATCTAGCCGTCTCAAATATGAGTTCCAAGGATACACCGATTGCTGTATAATAAA 904
Query 898 GAGCTTGGAATCTAGTAAGCGTTGAAGTCAGGATCAACGAAAGTTGCTATGCTGGCCTTG 957
|||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 905 GAGCTTGGAATCAAGTAAGCGTTGAAGTCAGGATCAACGAAAGTTGCTATACTAGCCTTG 964
Query 958 T 958
|
Sbjct 965 T 965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46868459151
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5