BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493573
Length=1610
Score E
Sequences producing significant alignments: (Bits) Value
AT5G33320.1 | Symbols: CUE1, PPT, ARAPPT | Glucose-6-phosphate/... 2527 0.0
AT1G43310.1 | Symbols: | Nucleotide-sugar transporter family p... 215 1e-54
AT2G26220.1 | Symbols: | pseudogene, similar to phosphoenolpyr... 172 7e-42
> AT5G33320.1 | Symbols: CUE1, PPT, ARAPPT | Glucose-6-phosphate/phosphate
translocator-related | chr5:12588838-12591748 FORWARD
LENGTH=1679
Length=1679
Score = 2527 bits (1368), Expect = 0.0
Identities = 1517/1588 (96%), Gaps = 14/1588 (1%)
Strand=Plus/Plus
Query 36 CACCAACTGCTGATT-CAGATCTCCACGATGCAAAGCTCCGCCGTATTTTCCCTCTCTCC 94
|||||||| |||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 85 CACCAACTTCTGATTCCAGATCTCAACGATGCAAAGCTCCGCCGTATTCTCCCTCTCTCC 144
Query 95 GTCGCTCCCTCTCCTAAAACCACGGCGGCTCTCTCTCCGCCACCATTCCTTAACCA---C 151
|||||| ||||||||||||||||| ||||||||||||||||||||| || |||||| |
Sbjct 145 GTCGCTTCCTCTCCTAAAACCACGTCGGCTCTCTCTCCGCCACCATCCCATAACCACCGC 204
Query 152 CG---CTTCAAGCGATCTAAACATTTCTCCAAATGTTGTCTCTATTCCTTCTTTATCTCG 208
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 205 CGCTTCTTCAAGCGATCTAAACGTTTCTCCAAATGTTGTCTCTATTCCTTCTTTATCTCG 264
Query 209 TCGATCTTGGCGTCTCGCTTCATCTGATTCGCCTCTCCGAGCTTGGTCCGGTGTTCCTTC 268
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 265 TCGATCTTGGCGTCTCGCTTCGTCTGATTCGCCTCTCCGTGCTTGGTCCGGTGTTCCTTC 324
Query 269 TTCGATCTCTCACT-CTCTCGACACGAATCGTTTCAAAACCGCCGCTACTGCAGTTCCTG 327
| |||||||||||| || | |||||||||||||||| |||||||||||||||||||||||
Sbjct 325 TCCGATCTCTCACTCCT-TAGACACGAATCGTTTCAGAACCGCCGCTACTGCAGTTCCTG 383
Query 328 AAAGTGCAGAGGAAGGAGATAGCAGTGGGAAATTGACCAAGATTTTAGAACTTGGCTTGT 387
||||||| |||||||| |||| |||||| |||||||| ||| |||| |||||||||||||
Sbjct 384 AAAGTGCTGAGGAAGGTGATAACAGTGGTAAATTGACGAAGGTTTTGGAACTTGGCTTGT 443
Query 388 TGTTTGCTATGTGGTACCTTTTCAATATCTACTTCAACATCTACAATAAACAGGTTTTGA 447
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 TGTTCGCTATGTGGTACCTTTTCAATATCTACTTCAACATCTACAATAAACAGGTTTTGA 503
Query 448 AAGCTCTACACGCTCCAATGACTGTCACTTTGGTTCAGTTTGCCGTCGGTAGTGTGCTCA 507
|||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 504 AAGCTCTACATGCTCCAATGACTGTGACTTTGGTTCAGTTTGCTGTTGGTAGTGTGCTCA 563
Query 508 TTACTATCATGTGGGTTCTTAACCTGTACAAGAGACCGAAGATCAGTGGTGCTCAGCTAG 567
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 564 TTACTATCATGTGGGTTCTTAACCTGTACAAGAGACCAAAGATCAGTGGTGCTCAGCTAG 623
Query 568 CTGCCATCTTGCCGCTTGCCGTTGTGCACACACTTGGTAATCTGTTTACGAACATGAGTC 627
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 624 CTGCCATCTTGCCGCTTGCTGTTGTGCACACACTTGGTAATCTGTTTACGAACATGAGTC 683
Query 628 TTGGGAAAGTTTCTGTTTCCTTTACTCACACCATTAAAGCCATGGAGCCTTTCTTCTCTG 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 TTGGGAAAGTTTCTGTTTCCTTTACTCACACCATTAAAGCCATGGAGCCTTTCTTCTCTG 743
Query 688 TGTTGTTGTCTGCTATGTTTCTCGGAGAGACGCCTACTCCATGGGTACTCGGTGCCATTG 747
| || |||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 744 TTTTATTGTCTGCTATGTTTCTCGGGGAGAAACCTACTCCATGGGTACTCGGTGCCATTG 803
Query 748 TACCAATTGTTGGTGGAGTTGCACTTGCTTCAATTTCGGAGGTCTCATTTAACTGGGCTG 807
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 804 TACCAATTGTTGGTGGAGTTGCACTTGCTTCAATTTCGGAGGTCTCATTCAACTGGGCTG 863
Query 808 GATTTTCGAGTGCAATGGCATCAAACTTGACTAACCAATCCCGTAATGTGCTGAGTAAGA 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 GATTTTCGAGTGCAATGGCATCAAACTTGACTAACCAATCCCGTAATGTGCTGAGTAAGA 923
Query 868 AAGTCATGGTTAAGAAAGATGATTCTCTGGACAACATCACTCTCTTCTCAATTATAACAT 927
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 924 AAGTCATGGTTAAGAAAGATGATTCTCTTGACAACATCACTCTCTTCTCAATTATAACAT 983
Query 928 TGATGTCTCTCGTTCTGATGGCTCCTGTGACTTTCTTTACGGAAGGCATCAAGTTCACTC 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 TGATGTCTCTCGTTCTGATGGCTCCTGTGACTTTCTTTACGGAAGGCATCAAGTTCACTC 1043
Query 988 CTTCATACATTCAATCTGCTGGTGTGAATGTTCAACAAATATATACAAAGTCTCTTATTG 1047
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1044 CTTCATACATTCAATCAGCTGGTGTGAATGTTAAACAAATATATACAAAGTCTCTTATCG 1103
Query 1048 CTGCACTCTGCTTCCACGCATACCAGCAGGTGTCGTACATGATATTGGCGAGAGTATCAC 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 CTGCACTCTGCTTCCACGCATACCAGCAGGTGTCGTACATGATATTGGCGAGAGTATCAC 1163
Query 1108 CGGTTACACATTCTGTTGGAAACTGTGTGAAACGTGTTGTGGTTATTGTGAGCTCTGTCA 1167
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 CGGTTACACATTCTGTCGGAAACTGTGTGAAACGTGTTGTGGTTATTGTGAGCTCTGTCA 1223
Query 1168 TCTTCTTCAAGACACCTGTCTCGCCTGTTAATGCTTTTGGAACTGGGATCGCCCTTGCGG 1227
|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1224 TCTTCTTCAAGACACCCGTCTCGCCTGTTAATGCTTTCGGAACTGGAATCGCCCTTGCGG 1283
Query 1228 GTGTCTTCTTATACTCCAGAGTTAAGGGTATTAAGCCAAAGCCGAAGACTGCTTAAGCAA 1287
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1284 GTGTCTTCTTATACTCCAGAGTGAAGGGTATTAAGCCAAAGCCAAAGACTGCTTAAGCAA 1343
Query 1288 ATATCTGCTAATACCTAATGTCATATCACTCCCGCGCTTTGGATTTTTATACAATTTCTC 1347
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1344 ATATCGGCTAATACCTAATGTCATATCACTCCCGCGCTTTGGATTTGTATACAATTTCTC 1403
Query 1348 GAGCTGAAGTTTTCAGATAGATGGTTTTATTCTTTTGCGGGTTGTT-CACGAAGTTTCAT 1406
||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1404 GAGCTAAAGTTTTCAGATAGATGGTTTTATTCTTTTGCGGGTTTTTTCACGAAGTTTCAT 1463
Query 1407 TATCGCTTTCTAAGTTTTTTGCTGCAGCCATGGGTTTTCTTAGAGTTTGTTATAAGTTCT 1466
||| ||||||||| |||| ||||||||||| |||| |||||||||||||||||||||||
Sbjct 1464 CATCCCTTTCTAAGCTTTTCGCTGCAGCCATCGGTTCTCTTAGAGTTTGTTATAAGTTCT 1523
Query 1467 CTTCTGTGCCTAGACAAATGCTAAACTCTTAAATTTCTTACAGTTTT-CCAAGAATAACT 1525
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1524 CTTCTGTGTCTAGACAAATGCTAAACTCTTAAATTTCTTACAGTTTTTCCAAGAATAACT 1583
Query 1526 TGTCAACACATTCTCATTGGTGCTTTTAGTTTACACGTTTAAGGTTTATTAGGAG---CA 1582
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1584 TGTCAACACATTCTCATTACTGCTTTTAGTTTACACGTTTAAGGTTTATTAGGAGGAGCA 1643
Query 1583 CGTGAATTGTTCCTTTTGATATGGTGAT 1610
|||||||||||||||||| |||||||||
Sbjct 1644 CGTGAATTGTTCCTTTTGCTATGGTGAT 1671
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1 ACCAACCCACTCGACGGAGTCTCCAACGC 29
|||||||||||||||||||||||||||||
Sbjct 29 ACCAACCCACTCGACGGAGTCTCCAACGC 57
> AT1G43310.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr1:16345974-16346475 REVERSE LENGTH=282
Length=282
Score = 215 bits (116), Expect = 1e-54
Identities = 124/128 (97%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 720 CCTACTCCATGGGTACTCGGTGCCATTGTACCAATTGTTGGTGGAGTTGCACTTGCTTCA 779
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 127 CCTACTCCATATGTACTCAGTGCCATTGTACCAATTGTTGGTGGAGTTGCACTTGCTTCA 186
Query 780 ATTTCGGAGGTCTCATTTAACTGGGCTGGATTTTCGAGTGCAATGGCATCAAACTTGACT 839
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 ATTTCGGAGGTCTCATTCAACTGGGCTGGATTTTCGAGTGCAATGGCATCAAACTTGACT 246
Query 840 AACCAATC 847
||||||||
Sbjct 247 AACCAATC 254
> AT2G26220.1 | Symbols: | pseudogene, similar to phosphoenolpyruvate/phosphate
translocator precursor, similar to AraPPT,
GB:U66321; blastp match of 88% identity and 4.2e-35 P-value
to GP|9295275|gb|AAF86907.1|AF223359_1|AF223359 phosphoenolpyruvate/phosphate
translocator precursor {Mesembryanthemum
crystallinum} | chr2:11161666-11162465 FORWARD LENGTH=800
Length=800
Score = 172 bits (93), Expect = 7e-42
Identities = 107/113 (95%), Gaps = 3/113 (3%)
Strand=Plus/Plus
Query 891 TCTCTGGACAACATCACTCTCTTCTCAATTATAACATTGATGTCTCTCGTTCTGATGGCT 950
||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 330 TCT-TGGACACCATCACTCTCTTCTCAATTATAACATTGA--TCTCTCGTTCTGATGGCT 386
Query 951 CCTGTGACTTTCTTTACGGAAGGCATCAAGTTCACTCCTTCATACATTCAATC 1003
| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 CATGTGCCTTTCTTTACGGAAGGCATCAAGTTCACTCCTTCATACATTCAATC 439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79517663280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5