BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493575
Length=1885
Score E
Sequences producing significant alignments: (Bits) Value
AT5G33290.1 | Symbols: XGD1 | xylogalacturonan deficient 1 | ch... 2577 0.0
> AT5G33290.1 | Symbols: XGD1 | xylogalacturonan deficient 1 |
chr5:12558256-12562020 FORWARD LENGTH=1866
Length=1866
Score = 2577 bits (1395), Expect = 0.0
Identities = 1748/1908 (92%), Gaps = 66/1908 (3%)
Strand=Plus/Plus
Query 1 AACAAGTTGCTTGGTGA-ACTAAAACTCATTTCT--T-CCACTAATGAT--ATGATAGAG 54
||||||||||||||||| | ||||||||||||| | ||||||||||| |||||||||
Sbjct 2 AACAAGTTGCTTGGTGATGC-AAAACTCATTTCTCCTCCCACTAATGATCGATGATAGAG 60
Query 55 ACATACCAAAGAAtctttcatgacttttcttc-ttttctcctcacttcc-aaaattctct 112
||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 61 ACATAACAAAGAATCTTTCATGACTTTTCTTCTTTTTCTCCTCACTTCCAAAAATTCTC- 119
Query 113 tc-tgtcttcctcttAAGAGT-AAAGAATCaaaaaaaggaacccaaagaaaa-aaaaTAA 169
|| |||||||||||||||| | |||||||| | ||||||||||||||||||| ||| ||
Sbjct 120 TCTTGTCTTCCTCTTAAGA-TGAAAGAATC-ATAAAAGGAACCCAAAGAAAAGCAAA-AA 176
Query 170 CATAGCCATGGCTGCTCCAAGATCAAGAAGATGctctctttctctcttaacccttatctc 229
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 177 CATAACCATGGCTGCTCCAAGATCAAGAAGATGCTCTCTTTCTCTCTTAACTCTTTTCTC 236
Query 230 catctctcttattcttatttctgtttcactctttgtctcCACAAAACCAACTAGTAAGCC 289
|||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 237 CATCACTCTTATTCTTATTTCTGTTTCACTCTTTGTCTCCACAAAACCAGCTAATAAGCC 296
Query 290 CTTAATTGATTACAGAAACCAAttctctgtttctatctcttctcctccttctccatctct 349
|| | |||||||||||||| || ||| |||| |||||| || || |||||| ||| |
Sbjct 297 TTTCCTCGATTACAGAAACCAGTTTTCTATTTCCATCTCTA-TC-TC-TTCTCC-TCT-T 351
Query 350 tcttGaacagaacaacacaacacacactagtcttagcaacacaacaaacacTAGTCTAAT 409
||||| || | ||||||| |||||||| || | ||||
Sbjct 352 ----GAACA-AA-A-CACAACAAACACTAGT-TT-----------------T-GTCT--- 382
Query 410 CTCAGCCTCTCCTCCTTTTTCTCATCTCGGACAAAACAATACAACAAACACTACTCTTGC 469
| ||||||||||||||| || | ||| || || | ||| ||||||||||||| ||||||
Sbjct 383 C--AGCCTCTCCTCCTTTGTCCCCTCTTGGTCAGAGCAACACAACAAACACTATTCTTGC 440
Query 470 TTCTTCATC--CT-CTT--T-TT---CTGATCACCAAAACCAAAATAAGTCTCCAAGTCC 520
|||||| || || ||| | || ||||||||||||||||||||||||||||||||||
Sbjct 441 TTCTTCTTCTTCTTCTTCCTCTTTTTCTGATCACCAAAACCAAAATAAGTCTCCAAGTCC 500
Query 521 TACAAGTAAAAAAGTTGTAATTAAGAAAAGAAGTGGGTTGGATAAAATAGAATTAGATTT 580
||||||||||||| |||| || | ||||||||||||||| || |||||||||| ||||||
Sbjct 501 TACAAGTAAAAAAATTGTTATCAGGAAAAGAAGTGGGTTAGACAAAATAGAATCAGATTT 560
Query 581 AGCAAAAGCAAGAGCAGCAATTAAGAAGGCAGCTTCTACACAAAATTATATCAGCTCTCT 640
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 561 AGCAAAAGCAAGAGCAGCAATTAAGAAGGCAGCTTCTACACAAAATTATGTCAGCTCTCT 620
Query 641 CTACAAAAACCCAGCCGCCTTTCATCAGAGTCACACGGAAATGATGAATCGTTTTAAGGT 700
||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 621 CTATAAAAATCCAGCCGCCTTTCATCAGAGTCACACGGAGATGATGAATCGTTTTAAGGT 680
Query 701 GTGGACATACACAGAGGGAGAGGTCCCCCTGTTCCATGACGGCCCTGTGAATGACATTTA 760
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 681 GTGGACATACACAGAGGGAGAGGTCCCATTGTTCCATGACGGCCCTGTGAATGACATTTA 740
Query 761 CGGTATAGAAGGACAGTTCATGGACGAAATGTGCGTGGACGGACCGAAGAGTAGAAGCCG 820
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CGGCATAGAAGGACAATTCATGGACGAAATGTGCGTGGACGGACCGAAGAGTAGAAGCCG 800
Query 821 TTTTCGGGCGGATCGCCCCGAGGATGCTCACGTTTTCTTCATACCATTTAGCGTCGCCAA 880
||||||||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 801 TTTTCGGGCAGATCGACCCGAGAATGCTCATGTTTTCTTCATACCATTTAGCGTCGCCAA 860
Query 881 GGTCATCCACTTCGTCTACAAGCCCATCACCTCTGTCGAAGGATTTTCGCGGGCTCGCCT 940
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 861 GGTCATCCACTTCGTCTACAAGCCCATCACCTCTGTCGAAGGGTTTTCGCGGGCTCGCCT 920
Query 941 ACACCGTCTTATAGAGGATTATGTTGATGTAGTTGCTACTAAGCATCGC-TATTGGAACA 999
|||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 921 ACACCGCCTTATAGAGGATTATGTTGATGTAGTTGCTACTAAGCATC-CATATTGGAACC 979
Query 1000 GAAGCCAAGGTGGCGACCATTTCATGGTATCATGCCATGACTGGGCACCAGACGTGATCG 1059
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 980 GAAGCCAAGGAGGCGACCATTTCATGGTATCATGCCATGACTGGGCACCAGACGTGATTG 1039
Query 1060 ATGGGAATCCAAAGTTGTTTGAAAAATTCATAAGGGGTCTTTGCAATGCTAACACATCGG 1119
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 1040 ATGGGAATCCAAAGTTGTTTGAAAAATTCATTAGGGGACTTTGCAATGCTAACACCTCGG 1099
Query 1120 AAGGATTCCGGCCTAACGTGGATGTATCCATTCCGGAGATATACCTTCCTAAAGGTAAAT 1179
|||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1100 AAGGTTTCCGACCTAACGTGGACGTATCCATTCCGGAGATCTACCTTCCTAAAGGTAAAT 1159
Query 1180 TGGGTCCGTCTTTTCTCGGAAAATCACCGAGAATTCGATCTATACTCGCATTTTTTGCTG 1239
||||||||||||||||||| ||||||||| || |||||||||||||||||||||| ||||
Sbjct 1160 TGGGTCCGTCTTTTCTCGGGAAATCACCGCGAGTTCGATCTATACTCGCATTTTTCGCTG 1219
Query 1240 GAAGAAGTCACGGTGAAATCCGAAAAATCTTATTTAAACATTGGAAAGAAATGGACAATG 1299
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1220 GAAGAAGTCACGGTGAAATCCGAAAAATCTTATTTCAACATTGGAAAGAAATGGACAATG 1279
Query 1300 AAGTCCAAGTCTATGATCGTCTTCCCCCAGGAAAGGACTATACAAAAACTATGGGAATGA 1359
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1280 AAGTCCAAGTCTATGATCGTCTTCCGCCAGGAAAAGACTATACAAAAACTATGGGAATGA 1339
Query 1360 GTAAGTTTTGTCTGTGTCCGAGTGGTTGGGAGGTCGCTAGCCCGAGAGAGGTCGAGGCGA 1419
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1340 GTAAGTTTTGTCTGTGTCCGAGTGGTTGGGAGGTCGCTAGCCCGAGGGAGGTCGAGGCGA 1399
Query 1420 TATATGCTGGTTGTGTACCGGTGATCATATCGGATAATTATTCATTACCATTCAGTGATG 1479
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 TATATGCTGGTTGTGTACCAGTGATCATATCGGATAATTATTCATTACCATTCAGTGATG 1459
Query 1480 TGCTTAATTGGGATTCCTTTTCCATACAAATCCCTGTTTCTAGGATACCAGAGATCAAAA 1539
|||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1460 TGCTGAATTGGGATTCCTTCTCCATACAAATCCCTGTTTCTAGGATAAAAGAGATCAAAA 1519
Query 1540 CCATTCTACAGAGTGTTTCTCTCGTAAGATACTTGAAGATGTATAAGAGAGTCTTAGAAG 1599
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1520 CCATTCTACAAAGTGTCTCTCTCGTAAGATACTTGAAGATGTATAAGAGAGTTTTAGAAG 1579
Query 1600 TGAAGCAACATTTCGTGTTGAATCGTCCAGCTAAACCCTACGATGTGATGCATATGATGC 1659
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1580 TGAAGCAGCATTTCGTGTTGAATCGTCCAGCTAAACCCTACGATGTGATGCATATGATGC 1639
Query 1660 TTCACTCTATCTGGTTAAGACGACTTAATCTTAGGCTGGGGGCATAGTATATAAtttttt 1719
|||| || ||||||||||||||||||||||||||||| || ||||||||| ||||||||
Sbjct 1640 TTCATTCGATCTGGTTAAGACGACTTAATCTTAGGCTTGGTACATAGTATACAATTTTTT 1699
Query 1720 tGTT--GTTACAAATAATTCTTAAGTGTCAAAGTTCATATGAGTTACTAGCTTTGTATTC 1777
||| ||| ||||||| | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1700 -GTTATGTTGCAAATAAATATTAAGTGTCTAAGTTCATATGAGTTACTAGCTTTGTATTC 1758
Query 1778 TTTCCATAAATTTTCATAGTTCTTTCTTGTAAAAATATATACAACAACAAACACAATATC 1837
||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1759 TTTCCATAAATTTGCATAGTTCTCTCTTGTAAAAAAATATACAACAACAAACACAATATC 1818
Query 1838 AAAGATTTCCATATTAATAAGAGAAACAAAGCAATTGTTATTCTTGTT 1885
|||||||||| |||||||||||||||||||||| |||||||| |||||
Sbjct 1819 AAAGATTTCCTTATTAATAAGAGAAACAAAGCATTTGTTATTTTTGTT 1866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93322813155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5