BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493576
Length=2460
Score E
Sequences producing significant alignments: (Bits) Value
AT5G33280.1 | Symbols: | Voltage-gated chloride channel family... 3821 0.0
> AT5G33280.1 | Symbols: | Voltage-gated chloride channel family
protein | chr5:12549280-12552507 FORWARD LENGTH=2500
Length=2500
Score = 3821 bits (2069), Expect = 0.0
Identities = 2313/2432 (95%), Gaps = 12/2432 (0%)
Strand=Plus/Plus
Query 1 ATGCCGAACTCCACGACGGAAGACTCCGTCGCCGTTCCACTACTTCCCTCCCTCCGCCGC 60
||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGCCAAACTCAACGACGGAGGACTCCGTCGCCGTTCCACTACTCCCCTCCCTCCGCCGC 60
Query 61 GCTACTAACTCTACTTCCCAAGTCGCAATCGTCGGTGCCAACGTCTGTCCAATAGAAAGT 120
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTACTAACTCTACTTCTCAAGTAGCAATCGTCGGTGCCAACGTCTGTCCAATAGAAAGT 120
Query 121 CTCGATTACGAGATCGCGGAGAATGATTTCTTCAAGCAGGATTGGAGAGGTCGTAGTAAG 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCGATTACGAAATCGCGGAGAATGATTTCTTCAAGCAGGATTGGAGAGGTCGTAGTAAG 180
Query 181 GTAGAGATATTCCAATACGTGTTTATGAAGTGGCTGCTTTGTTTTTGTATCGGCATTATT 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTAGAGATTTTCCAATACGTGTTTATGAAGTGGCTGCTTTGTTTTTGTATCGGCATTATT 240
Query 241 GTTAGTCTCATCGGATTCGCTAATAACCTCGCTGTTGAGAATCTCGCCGGTGTTAAGTTC 300
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 GTTAGTCTCATCGGATTCGCTAATAACCTCGCCGTTGAGAATCTCGCCGGTGTTAAGTTT 300
Query 301 GTTGTTACTTCTAACATGATGATAGCTGGAAGGTTTGGTATGGGCTTTGTTGTTTTCTCT 360
|||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||
Sbjct 301 GTTGTTACTTCTAACATGATGATAGCCGGAAGGTTTGCTATGGGTTTTGTTGTTTTCTCT 360
Query 361 GTTACAAATCTGGTTCTTACTCTTTTTGCGTCGGTGATTACCGCTTTTGTCGCGCCTGCT 420
||||||||| || |||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 361 GTTACAAATTTGATTCTTACTCTCTTTGCGTCGGTGATTACCGCTTTTGTTGCTCCTGCT 420
Query 421 GCGGCAGGTTCCGGTATACCGGAAGTGAAGGCCTATTTGAATGGTGTTGATGCTCCAGAG 480
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 421 GCGGCAGGTTCCGGTATACCGGAAGTTAAGGCTTATTTGAATGGTGTTGATGCTCCAGAG 480
Query 481 ATATTCTCACTTCGCACTTTGGTCGTTCAGATCATTGGGAACATATCTGCAGTGTCAGCG 540
||||||||||||||||||||| || || ||||||||||||||||||||||||| ||||||
Sbjct 481 ATATTCTCACTTCGCACTTTGATCATTAAGATCATTGGGAACATATCTGCAGTATCAGCG 540
Query 541 TCTCTTCTCATTGGCAAA-GCAGGGCCTATGGTGCACACCGGTGCTTGTGTTGCATCTAT 599
|||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 541 TCTCTTCTCATTGG-AAAGGCAGGGCCTATGGTGCATACTGGTGCTTGTGTTGCATCTAT 599
Query 600 ACTAGGTCAGGGTGGCTCCAAAAGATTTAGACTGACCTGGAGATGGCTCAGATTTTTTAA 659
||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||
Sbjct 600 ACTTGGTCAGGGTGGCTCCAAAAGATATAGATTGACCTGGAGATGGCTCAGATTTTTCAA 659
Query 660 AAATGACAGAGACCGAAGAGATCTTGTAACTTGTGGGTCAGCTGCTGGTATTGCTGCCTC 719
|||||| |||||| ||||||||||||||||||||||| ||||||||||||| ||||| ||
Sbjct 660 AAATGATAGAGACAGAAGAGATCTTGTAACTTGTGGGGCAGCTGCTGGTATCGCTGCTTC 719
Query 720 GTTTCGTGCTCCGGTTGGTGGTGTCCTGTTTGCGCTTGAGGAGATGTCATC-T--T---G 773
|||||||||||||||||||||||||||||||||||||||||| |||||||| | | |
Sbjct 720 GTTTCGTGCTCCGGTTGGTGGTGTCCTGTTTGCGCTTGAGGAAATGTCATCTTGGTGGAG 779
Query 774 GAGTGCACTTTTATGGAGAATCTTCTTTTCAACAGCTGTTGTGGCAATTGTTCTCAGAGC 833
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 780 GAGTGCACTTTTATGGAGAATCTTCTTTTCGACAGCTGTTGTGGCAATAGTTCTCAGAGC 839
Query 834 TCTAATCGATGTGTGTTTAAGTGGAAAGTGCGGGTTATTTGGTAAAGGAGGCTTAATAAT 893
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 TCTAATCGATGTGTGTTTAAGTGGAAAGTGTGGGTTATTTGGTAAAGGAGGCTTAATAAT 899
Query 894 GTTTGATGTCTATTCAGAAAATGCATCATATCATCTGGGGGATGTACTTCCTGTTCTTCT 953
|||||||||||| ||||||||||| ||||||||| | |||||||||||||||||||||||
Sbjct 900 GTTTGATGTCTACTCAGAAAATGCGTCATATCATTTAGGGGATGTACTTCCTGTTCTTCT 959
Query 954 CCTTGGAGTTGTCGGTGGTATTTTAGGAAGCTTATACAACTTTC-TACTTGATAAGGTTC 1012
||||| ||||| ||||||||||||||||||||||||||| ||| |||| ||||||||||
Sbjct 960 TCTTGGGGTTGTTGGTGGTATTTTAGGAAGCTTATACAAC-TTCTTACTGGATAAGGTTC 1018
Query 1013 TGCGAGCTTACAACTACATATATGAGAAAGGGGTTACTTGGAAGATCCTCCTCGCATGTG 1072
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1019 TGCGAGCTTACAACTACATATATGAGAAAGGGGTTACTTGGAAAATCCTCCTCGCTTGTG 1078
Query 1073 CAATATCAATTTTCACGTCCTGTCTTCTTTTTGGATTACCATTTCTTGCATCATGCCAAC 1132
| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1079 CGATATCGATTTTCACGTCCTGCCTTCTTTTCGGATTACCATTTCTTGCATCATGCCAAC 1138
Query 1133 CTTGTCCTGCCGATGCCTTAGAGGAGTGCCCTACAATTGGACGGTCTGGAAACTTTAAGA 1192
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CTTGTCCTGTCGATGCCTTAGAGGAGTGCCCTACAATTGGACGGTCTGGAAACTTTAAGA 1198
Query 1193 AATACCAATGCCCTCCTGGTCACTACAATGATCTAGCTAGCCTCATTTTCAACACAAATG 1252
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1199 AATACCAATGCCCTCCTGGTCACTACAATGATCTAGCTAGCCTTATTTTCAACACAAATG 1258
Query 1253 ATGATGCTATCAAAAACCTTTTCAGCAAAAACACTGACTTCGAGTTTCATTATTTTTCGG 1312
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ATGATGCCATCAAAAACCTTTTCAGCAAAAACACTGACTTCGAGTTTCATTATTTTTCGG 1318
Query 1313 TTCTTGTATTTTTTGTCACCTGCTTCTTCCTCAGTATCTTTAGCTATGGCATTGTTGCTC 1372
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TTCTCGTATTTTTTGTCACCTGCTTCTTCCTCAGTATCTTTAGCTATGGCATTGTTGCTC 1378
Query 1373 CAGCAGGGCTCTTTGTACCCGTTATCGTTACAGGAGCATCGTATGGACGGTTTGTAGGGA 1432
|||||||||||||||| || ||||| || |||||||||||||||||||||||||||||||
Sbjct 1379 CAGCAGGGCTCTTTGTGCCAGTTATTGTAACAGGAGCATCGTATGGACGGTTTGTAGGGA 1438
Query 1433 TGCTGCTTGGTTCAAACTCAAATCTTAATCATGGTCTGTTTGCTGTACTTGGTGCTGCGT 1492
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 1439 TGCTGCTTGGTTCAAACTCAAATCTTAATCATGGTCTGTTTGCTGTGCTCGGTGCTGCAT 1498
Query 1493 CCTTTCTTGGCGGAACAATGAGGATGACAGTTTCCACTTGTGTTATTCTCCTTGAGCTGA 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CCTTTCTTGGCGGAACAATGAGGATGACAGTTTCCACTTGTGTTATTCTCCTTGAGCTGA 1558
Query 1553 CCAACAATTTGCTGCTTCTACCTATGATGATGGTCGTCCTTCTGATTTCAAAAACAGTTG 1612
|||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1559 CCAACAATCTGCTGCTACTACCTATGATGATGGTGGTCCTTCTGATTTCAAAAACAGTTG 1618
Query 1613 CTGATGGTTTCAACGCTAACATCTATAACCTCATCATGAAGTTAAAAGGGTTTCCCTACC 1672
||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1619 CTGATGGTTTCAATGCTAACATCTACAACCTCATCATGAAGTTAAAAGGATTTCCCTACC 1678
Query 1673 TCTACAGCCATGCAGAGCCTTACATGAGGCAGCTTCTAGTTGGTGATGTAGTCACAGGCC 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1679 TCTACAGCCATGCAGAGCCTTACATGAGGCAGCTTCTAGTTGGTGATGTAGTCACCGGCC 1738
Query 1733 CACTTCAATTCTTCAACGGCATTGAGAAAGTCGAGACTATTGTACACGTTCTCAAAACCA 1792
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1739 CACTTCAAGTCTTCAATGGCATTGAGAAAGTCGAGACTATTGTACACGTTCTCAAAACGA 1798
Query 1793 CCAATCACAATGGCTTCCCCGTGGTTGATGGGCCACCTCTTGCTGCAGCTCCTGTTCTGT 1852
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1799 CCAATCACAATGGCTTCCCCGTGGTTGATGGGCCACCACTAGCTGCAGCTCCTGTTCTAC 1858
Query 1853 GCGGTCTAATCCTCCGGGCTCATATTCTGACTCTGCTAAAGAAACGAGTATTCATGTCTA 1912
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1859 ACGGTCTAATCCTCCGGGCTCATATTCTGACTCTGTTAAAGAAACGAGTATTCATGCCTA 1918
Query 1913 GTCCAGTAGCTTGTGACTCCAATACCCTTGCCCAATTCAAAGCTGAGGAGTTTGCTAAGA 1972
||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||
Sbjct 1919 GTCCAGTAGCTTGTGACTCCAATACCCTTTCCCAATTCAAGGCAGAGGAGTTTGCTAAGA 1978
Query 1973 AGGGTTCTGGGAGGGGTGATA-GAATAGAAGATGTGGAATTAAGCGAGGAAGAATTGAAT 2031
|||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1979 AGGGTTCTGGGAGGAGTGATAAGA-TAGAAGATGTGGAATTAAGCGAGGAAGAATTGAAT 2037
Query 2032 ATGTATTTGGATTTACATCCATTCTCTAATGCCTCGCCTTACACTGTTGTGGAGACGATG 2091
|||||||||||||| || ||||||||||||||||| || ||||||||||||||||| |||
Sbjct 2038 ATGTATTTGGATTTGCACCCATTCTCTAATGCCTCTCCGTACACTGTTGTGGAGACAATG 2097
Query 2092 TCACTTGCAAAGGCCCTTATCCTTTTCCGTGAGGTTGGCATAAGGCACTTACTGGTCATA 2151
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 2098 TCACTTGCAAAGGCCCTTATTCTCTTCCGTGAGGTTGGCATAAGGCACTTACTGGTTATA 2157
Query 2152 CCAAAAACCTCCAATAGACCTCCAGTGGTAGGTATATTGACACGGCATGACTTCATGCCG 2211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 CCAAAAACCTCCAATAGACCTCCAGTGGTAGGTATATTGACACGGCATGACTTCATGCCG 2217
Query 2212 GAACATGTACTAGGCCTGCATCCCTCCCAGTCTCGGAGCAGGTGGAAAAGGCTTCGGATT 2271
|||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 2218 GAACATATACTAGGCCTGCATCCCTCCGTTTCTCGGAGCAAGTGGAAAAGGCTTCGGATT 2277
Query 2272 CAACTGCCTTTCCTCTCATGAAGTATTAAGCTGCCTACCAAGTTTCAGGTATGACAGTTC 2331
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 CGGCTGCCTTTCTTCTCATGAAGTATTAAGCTGCCTACCAAGTTTCAGGTATGACAGTTC 2337
Query 2332 ATATAAACTCTGTATAGTTTATTGAACGCAGCCTTGTGGTGCTATGTCGAGCTCTTAGAT 2391
| |||||||||||| ||| |||| || ||||||||||||||||||||||| |||||||||
Sbjct 2338 AGATAAACTCTGTACAGTATATTAAAAGCAGCCTTGTGGTGCTATGTCGAACTCTTAGAT 2397
Query 2392 ACAGAAAGATGTAGAGAGATTTATAAATGTTG 2423
||||||||||||||||||||||||||||||||
Sbjct 2398 ACAGAAAGATGTAGAGAGATTTATAAATGTTG 2429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122056172319
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5