BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493578
Length=1943
Score E
Sequences producing significant alignments: (Bits) Value
AT5G34850.1 | Symbols: ATPAP26, PAP26 | purple acid phosphatase... 2691 0.0
> AT5G34850.1 | Symbols: ATPAP26, PAP26 | purple acid phosphatase
26 | chr5:13108154-13111631 REVERSE LENGTH=2030
Length=2030
Score = 2691 bits (1457), Expect = 0.0
Identities = 1798/1958 (92%), Gaps = 42/1958 (2%)
Strand=Plus/Plus
Query 1 TTTTGTAGACACCAAACTATTTCTAA-AATATCAAATTAGAAAGTTGGTTAAAAGGTTAC 59
|||| | ||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 35 TTTTCTTGACACCAAACTATTTCTAAGAATATCAAATT----A----GTTAAAAGGTTAC 86
Query 60 GTTATGCACTTTTATGCTTAAGACCCAATCTATTTGACTCAGCCAATCATAAATCTCCAC 119
|||||||||||| ||||||||||||||||| |||| |||| ||||||||||||||||||
Sbjct 87 GTTATGCACTTTAATGCTTAAGACCCAATCCATTTCCCTCAACCAATCATAAATCTCCAC 146
Query 120 GTATGTGGTTATCATCTTCTTCGATAG-T-ATTCATATATATCCGACGGGATTATCAATG 177
|||||||| ||| |||||||||||| | ||||||| |||||||||||| |||| ||||
Sbjct 147 GTATGTGG---TCACCTTCTTCGATAGCTCATTCATACATATCCGACGGGCTTATTAATG 203
Query 178 GCATCGAGAAGATAATCTCCCAAATGTCA--T-CTTCAACTTCT-AGATTTGGGAGATTG 233
|||||||| ||||||||||||||||||| | ||||| | ||| || | | | ||
Sbjct 204 TCATCGAGACGATAATCTCCCAAATGTCATCTCCTTCATC-TCTCAG-GTAAAAAAACTG 261
Query 234 AGGTATGGGCAGATTCAGT---GTGAAGAATCATTTGGTGATATTCTCTGTGTTCTTGAG 290
| | | | ||||| || |||| |||||||||||||||| ||||||||||||||||
Sbjct 262 A-G--T-CG-AGATTTGGTGACGTGATGAATCATTTGGTGATAATCTCTGTGTTCTTGAG 316
Query 291 CTCAG---TGTTGTTAAATAGAGGAG-ATGCTGGGGTTACAAGTAGTTTTATTAGATCCG 346
||||| |||||||| ||||||||| || |||| | ||||||||||||||| |||| |
Sbjct 317 CTCAGTATTGTTGTTATATAGAGGAGAAT-CTGGAATCACAAGTAGTTTTATTCGATCTG 375
Query 347 AATGGCCAGCGGTCGATATTCCACTTGACCATCATGTATTCAAAGTCCCAAAAGGGTATA 406
||||||| ||||| ||||| |||||||| |||||||| ||||||||||||||||| ||||
Sbjct 376 AATGGCCTGCGGTTGATATACCACTTGATCATCATGTTTTCAAAGTCCCAAAAGGATATA 435
Query 407 ATGCTCCACAACAAGTTCATATAACTCAAGGTGATTATGATGGTAAAGCTGTTATCATCT 466
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 436 ATGCACCACAACAAGTACACATAACTCAAGGTGATTATGATGGTAAAGCTGTTATCATCT 495
Query 467 CATGGGTTACACCAGATGAGCCTGGTCCTAGCAAAGTATATTACGGCGCGGTGCAGGGCA 526
| ||||||||||| ||||| |||||| ||||| ||||| ||||||| ||||| ||||| |
Sbjct 496 CTTGGGTTACACCTGATGAACCTGGTTCTAGCCAAGTACATTACGGTGCGGTTCAGGGGA 555
Query 527 AATATGAGTTTGTTGCTCAAGGGACATACCATAACTACACATTTTACAAATATAAGTCTG 586
||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 556 AATATGAGTTTGTTGCTCAAGGGACTTACCATAACTACACGTTTTACAAGTATAAGTCTG 615
Query 587 GGTTTATTCATCACTGCCTTGTCTCTGGCCTTGAGCATGATACAAAATACTATTACAAGA 646
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 616 GCTTTATTCATCACTGCCTTGTCTCTGACCTTGAGCATGATACAAAATACTATTACAAGA 675
Query 647 TCGAAAGCGGTGAATCTTCTCGAGAGTTTTGGTTTGTTACACCACCAGA-GATACATCCA 705
| ||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 676 TTGAAAGCGGTGAATCTTCTCGAGAGTTTTGGTTTGTTACACCACCACATG-TACATCCA 734
Query 706 GATGCTTCCTACAAGTTTGGTATTATAGGCGATATGGGCCAAACATTCAACTCGTTATCC 765
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 735 GATGCTTCCTACAAGTTTGGTATTATAGGCGATATGGGTCAGACATTCAACTCGTTATCC 794
Query 766 ACACTGGAACACTACATGCAGAGTGGAGCTCAAGCTGTCTTATTTCTAGGAGATCTCTCT 825
|| ||||||| |||||| ||||||||||||| ||||| |||||||| |||||||| |||
Sbjct 795 ACGTTGGAACATTACATGGAGAGTGGAGCTCAGGCTGTTTTATTTCTTGGAGATCTTTCT 854
Query 826 TATGCTGACAGATATCAGTATAATGACGTTGGTGTGAGATGGGATAGCTGGGGTCGTTTT 885
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 TATGCTGATAGATATCAGTATAATGACGTTGGTGTGAGATGGGATAGCTGGGGTCGTTTT 914
Query 886 GTGGAGCCTAGTACCGCTTATCAACCGTGGCTCTGGTCTGCAGGAAATCACGAAGTAGAT 945
||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 915 GTGGAGCGTAGTACCGCTTATCAACCGTGGCTTTGGTCTGCAGGAAATCATGAAGTAGAT 974
Query 946 TACATGCCATACATGGGGGAAGTGACACCTTTCAGGAATTACCTTCAGCGTTACACTACG 1005
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 975 TACATGCCATACATGGGGGAGGTGACACCTTTCAGGAATTACCTTCAGCGTTACACTACG 1034
Query 1006 CCTTACTTAGCCTCAAAAAGTAGCAGTCCTCTTTGGTATGCTGTTAGGCGTGCATCTGCT 1065
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1035 CCTTACTTAGCCTCAAAAAGTAGCAGTCCTCTTTGGTACGCTGTTAGGCGTGCATCTGCT 1094
Query 1066 CATATCATTGTCCTCTCCAGCTATTCGCCTTTTGTGAAATATACCCCGCAATGGCACTGG 1125
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1095 CATATCATTGTCCTCTCCAGCTATTCGCCTTTTGTGAAGTATACCCCGCAATGGCACTGG 1154
Query 1126 CTTAGTGAAGAGCTTAAAAGAGTTGACAGGGAAAAAACTCCTTGGCTAATTGTTCTGATG 1185
|||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||| |||||
Sbjct 1155 CTTAGTGAAGAGCTTACAAGAGTTGATAGGGAGAAAACACCTTGGCTAATTGTTTTGATG 1214
Query 1186 CACGTCCCAATATACAACAGTAATGAAGCACACTTCATGGAGGGTGAAAGCATGCGAGCA 1245
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1215 CACGTCCCAATATACAACAGTAATGAAGCACATTTCATGGAGGGTGAAAGCATGCGAGCA 1274
Query 1246 GTTTTTGAGGAGTGGTTTGTCGAACACAAAGTGGATGTAATCTTTGCTGGCCATGTTCAT 1305
| ||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||
Sbjct 1275 GCTTTTGAGGAGTGGTTTGTCCAACACAAAGTTGATGTAATCTTTGCTGGGCATGTTCAT 1334
Query 1306 GCCTACGAGAGATCGTACCGAATATCAAATGTGCGGTATAATGTGTCAAGCGGAGATCGT 1365
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1335 GCCTACGAGAGATCGTACCGAATATCAAATGTGCGGTATAACGTGTCAAGCGGAGATCGT 1394
Query 1366 TTCCCAGTTCCAGATAAGTCAGCTCCTGTTTATATCACAGTTGGAGACGGAGGAAATCAA 1425
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1395 TACCCAGTTCCAGATAAGTCAGCGCCTGTTTATATCACAGTTGGAGACGGAGGAAATCAA 1454
Query 1426 GAAGGTCTTGCTGGAAGGTTTAGGGAACCACAGCCAGATTATTCTGCATATCGAGAAGCT 1485
|||||||| ||||||||||||| |||||||||||||||||||||||||| ||| ||||||
Sbjct 1455 GAAGGTCTGGCTGGAAGGTTTACGGAACCACAGCCAGATTATTCTGCATTTCGGGAAGCT 1514
Query 1486 AGCTACGGCCACTCTACTCTGGAGATAAAGAACCGAACACATGCGATATACCACTGGAAC 1545
||||| ||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 1515 AGCTATGGCCACTCTACTCTGGATATAAAGAACCGAACACACGCTATATACCACTGGAAC 1574
Query 1546 CGCAATGATGATGGGAAGAAAGTAGCAACGGATGAATTTGTGTTACACAACCAGTACTGG 1605
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1575 CGCAATGATGATGGGAAGAAAGTGGCAACGGATGAATTTGTATTACACAACCAGTACTGG 1634
Query 1606 GGAAAGAACATTCGACGGAGAAAGCTTAAGAAGCATTATATCAAGAGTGTTGTGGCTGGT 1665
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1635 GGAAAGAACATTCGACGGAGAAAGCTTAAGAAGCATTATATCAGGAGTGTTGT---TGGT 1691
Query 1666 GGCTGGATTGCCACTTGATTCACTAAGTCTGCCTCATGCTTTCTATCAAAGTGTGTGAGG 1725
|||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1692 GGCTGGATCGCCACTTAATTCACTAAGTCTGCCTCATGCTTTGTATCAAAGTGTGTGAGG 1751
Query 1726 ATATTCTTTTAACTCAAAACTTATTACTTAATTTGATGTGAAATTTCTTTCCCGCTTAAG 1785
||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1752 ATATTCTTTTAACTCGGAACTTATTACTTAATTTGATGTTAAATCTCTTTCCCGCTTAAG 1811
Query 1786 TTTTCTGCCATCTGAAATATGATGATGGGAATTATGTACTCTTATCACTCTTTTAATGAT 1845
||||| || ||||| ||||||| | |||||||||||| |||||||| |||||| ||||
Sbjct 1812 TTTTCAGCAATCTGGAATATGA--A-GGGAATTATGTATTCTTATCAGTCTTTTGATGAA 1868
Query 1846 GTGAGGTCTACTTCTGGGATTTTGGGTTTTGTGAATAATGTATTCCTTATAACGGTGTTA 1905
||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||||||||||
Sbjct 1869 GTGAGGTCTACTTCTGGGATTATGGATTTGGTGAATAATGTATTCCTTAGAACGGTGTTA 1928
Query 1906 AGGAAATCTTTCACATGGGT-TGAATTGAGAAGTCCAT 1942
||||| | |||||||||||| |||||||||||||||||
Sbjct 1929 AGGAATTGTTTCACATGGGTGTGAATTGAGAAGTCCAT 1966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96234444765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5