BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493579
Length=1924
Score E
Sequences producing significant alignments: (Bits) Value
AT5G34930.1 | Symbols: | arogenate dehydrogenase | chr5:132333... 2898 0.0
> AT5G34930.1 | Symbols: | arogenate dehydrogenase | chr5:13233374-13235567
FORWARD LENGTH=1985
Length=1985
Score = 2898 bits (1569), Expect = 0.0
Identities = 1801/1911 (94%), Gaps = 24/1911 (1%)
Strand=Plus/Plus
Query 29 ATGTTCCCTtctctctctctc-CGC-CCACCAAACC-CCACCGCCGT-CGTCACCGAAAA 84
||| ||||||||||||||||| | | || || |||| ||||| | | ||||||||| |
Sbjct 78 ATGCTCCCTTCTCTCTCTCTCTC-CACCGCC-AACCGCCACC-TC-TCCGTCACCGACAC 133
Query 85 CAACCCTCTTCCCAATTCCGA-TCC-A----ATCCCTCCTCTCCGTATCGCCATTATCGG 138
|| |||||||||||| ||| | ||| | | ||||||||||||||||||||| |||||
Sbjct 134 CATCCCTCTTCCCAACTCCAACTCCAACGCCACCCCTCCTCTCCGTATCGCCATCATCGG 193
Query 139 ATTCGGCAACTACGGTCAATTCCTCGCCGAAACCCTAATTTCTCAAGGCCACATTCTCTT 198
|||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 194 ATTCGGAAACTACGGCCAATTCCTTGCCGAAACCCTAATTTCTCAAGGCCACATTCTCTT 253
Query 199 CGCTCACTCCCGATCCGATCACTCCTCCGCCGCTCGTCGTCTCGGTGTCTCTTACTTCGC 258
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct 254 CGCTCACTCCCGATCCGATCACTCCTCCGCCGCTCGCCGTCTCGGTGTCTCATACTTCAC 313
Query 259 CGATCTTCACGATCTTTGCGAACGTCATCCTGACGTAGT-CTTACTCTGTACTTCAATCC 317
||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 314 CGATCTTCACGATCTCTGCGAACGTCATCCTGACGTAGTCCTT-CTCTGTACTTCAATCC 372
Query 318 TCTCCATTGAGAATGTTCTCAAAACGTTGCCGTTTCAGAGACTCCGTCGCAACACTCTCT 377
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 TCTCCATAGAGAATATTCTCAAAACGTTGCCGTTTCAGAGACTCCGTCGCAACACTCTCT 432
Query 378 TCGTTGATGTTCTCTCTGTTAAAGAGTTTGCTAAAACTCTTCTCCTTCAATACTTACCTG 437
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 TCGTTGATGTTCTCTCCGTTAAAGAGTTTGCTAAAACTCTTCTCCTTCAATACTTACCTG 492
Query 438 AAGATTTCGATATTCTTTGTACACATCCAATGTTTGGTCCACAGAGTGTGAATTCAAATC 497
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 493 AAGATTTCGATATTCTTTGTACACATCCAATGTTTGGTCCTCAGAGTGTGAGTTCAAATC 552
Query 498 ATGGTTGGAGAGGATTAAGATTTGTGTATGATAAAGTTAGGATTGGGGAAGATAGATTGA 557
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 553 ATGGCTGGAGAGGATTAAGATTTGTGTATGATAAAGTTAGGATTGGGGAAGAGAGATTGA 612
Query 558 GAATCTCAAGGTGTGAGAGTTTTCTTGGTG-TTTTTGAGAGAGAAGGATGTGAGATGGTG 616
|| ||||||||||||||||||||||| | | |||||| |||||||||||||||||||||
Sbjct 613 GAGTCTCAAGGTGTGAGAGTTTTCTT-GAGATTTTTGTTAGAGAAGGATGTGAGATGGTG 671
Query 617 GAGATGAGTGTTACTGATCATGATAAGTTTGCTGCGGAATCGCAGTTTATAACGCATACT 676
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 672 GAGATGAGTGTTACTGATCATGATAAGTTTGCTGCTGAATCACAGTTTATAACTCATACT 731
Query 677 CTTGGTAGGCTTTTGGGGATGTTGAAGTTGCA-ATCGACGCCGATTAATACGAAAGGGTA 735
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 732 CTTGGTAGGCTTTTGGGGATGTTGAAGTTG-ATATCGACGCCGATTAATACGAAAGGGTA 790
Query 736 TGAGGCGTTGCTTGATTTAGCTGAGAATACTTGTGGGGATAGTTTTGATTTGTATTATGG 795
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 791 CGAGGCGTTGCTTGATTTAGCTGAGAATATTTGTGGGGATAGTTTTGATTTGTATTATGG 850
Query 796 GTTGTTTGTGTATAATAAGAACTCGTTGGAGGTGTTAGAGAGGATTGATTTGGCTTTCGA 855
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 851 GTTGTTTGTGTATAATAACAACTCTTTGGAGGTGTTAGAGAGGATTGATTTGGCTTTCGA 910
Query 856 GGCATTGCGTAAGGAGCTTTTTAGTCGACTTCATGGTGTTGTGAGGAAGCAGTCGTTTGA 915
||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 911 GGCTTTGCGTAAGGAGCTTTTTAGTCGGCTTCACGGTGTTGTGAGGAAGCAGTCTTTTGA 970
Query 916 AGGTGAAGCAAAGAAGGTTCATGTTTTTCCAAATGGTTATGAAAATGATGCTTCTTTGGA 975
||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct 971 AGGTGAAGCAAAGAAAGTTCATGTTTTTCCAAATTGTGGTGAAAATGATGCTTCTTTGGA 1030
Query 976 TTTGATGAGGTCAGAAGATGTTGCTGTGAAGTATGAATATAACCCCCAGGTCTCTGGCAG 1035
| ||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| ||
Sbjct 1031 TATGATGAGGTCAGAAGATGTTGTTGTGAAGTATGAATATAACTCCCAGGTGTCTGGTAG 1090
Query 1036 TGTTAATGACGGTTCGAGGCTCAAGATTGGTATTGTCGGGTTTGGTAATTTTGGACAGTT 1095
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1091 TGTTAATGACGGTTCGAGGCTCAAGATTGGTATCGTCGGGTTTGGAAATTTTGGACAGTT 1150
Query 1096 TCTAGGAAAAACCATGGTCAAGCAGGGTCACACTGTGTTAGCCTATTCCAGAACTGACTA 1155
|||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1151 TCTAGGTAAAACCATGGTCAAGCAGGGTCACACTGTGTTAGCTTATTCCAGAAGTGACTA 1210
Query 1156 CACTGATGTAGCTGCGAAGCTGGGTGTCTCGTATTTTTCAGATCTTGATGATCTATTTGA 1215
|||||||| ||| || ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1211 CACTGATGAAGCAGCAAAGCTCGGTGTTTCGTATTTTTCAGATCTTGATGATCTATTTGA 1270
Query 1216 AGAGCATCCTGAAGTTATTCTTCTCTGTACGTCAATCCTTTCGACTGAAAAAGTTCTCAA 1275
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1271 AGAGCATCCTGAAGTTATTATTCTCTGTACGTCAATCCTTTCGACTGAAAAAGTTCTCGA 1330
Query 1276 ATCACTCCCATTTCAGAGACTGAAGAGAAGCACACTTTTTGTGGATGTGCTTTCAGTAAA 1335
||||| || |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1331 GTCACTACCGTTTCAGAGACTGAAGAGAAGCACACTTTTTGTGGATGTACTCTCAGTAAA 1390
Query 1336 AGAGTTCCCGA-GAAGTTTATTTCTTCAAACTCTACCACAAGATTTCGATATTTTATGCA 1394
||||||||||| ||| |||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 1391 AGAGTTCCCGAGGAA-TTTATTTCTTCAAACTCTCCCACAAGATTTTGATATTTTGTGCA 1449
Query 1395 CACATCCTATGTTTGGACCAGAGAGTGGTAAAAATGGATGGAACAATCTTGCCTTTGTGT 1454
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 CGCATCCTATGTTTGGGCCAGAGAGTGGTAAAAATGGATGGAACAATCTTGCCTTTGTGT 1509
Query 1455 TTGATAAGGTTAGGATTGGAATGGATGATAGaaaaaaaTTGAGGTGTGACAGTTTTCTTG 1514
||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||
Sbjct 1510 TTGATAAGGTTAGGATTGGAATGGATGATAGAAGAAAATCGAGGTGTAACAGTTTTCTTG 1569
Query 1515 ATATTTTTGCCCGTGAAGGATGTCGTATGGTGGAGATGTCGTGTGCTGAACATGATTGGC 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1570 ATATTTTTGCCCGTGAAGGATGTCGTATGGTGGAGATGTCGTGTGCTGAACATGATTGGC 1629
Query 1575 ATGCTGCTGGATCACAGTTTATCACACACTCAGTGGGAAGGCTTCTGGAGAAGCTGAGCT 1634
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1630 ATGCTGCTGGATCACAGTTTATCACACACACAGTGGGAAGGCTTCTGGAGAAGCTGAGCT 1689
Query 1635 TGGAATCTACTCCTATCGATACCAAAGGTTATGAGACATTGCTAAAATTAGTGGAGAATA 1694
|||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1690 TGGAATCTACTCCTATAGATACCAAAGGTTATGAGACATTGCTAAAACTGGTGGAGAATA 1749
Query 1695 CTGCTGGTGACAGCTTTGATCTTTACTATGGACTATTTTTATACAATCCTAATGCAATGG 1754
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1750 CTGCTGGTGACAGCTTTGATCTGTACTATGGACTATTTTTATACAATCCTAATGCAATGG 1809
Query 1755 AACAGCTTGAGAGGTTTCATGTGGCTTTTGAGTCATTGAAGAAACAGCTCTTTGGAAGAC 1814
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||
Sbjct 1810 AACAGCTTGAGAGGTTTCATGTGGCTTTTGAATCATTGAAGACACAGCTCTTTGGACGAC 1869
Query 1815 TACATTCACAACATTCTCATGAGCTAGCTAAATCATCTTCGCCAAAGACAACTAAGCTAT 1874
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1870 TACATTCTCAACATTCTCATGAGCTAGCTAAATCATCTTCCCCAAAGACAACTAAGCTAT 1929
Query 1875 TAACTAGCTAAAGTTAG-AGTTCTCTCAGTCTTGCTCCTTGATTACTAATT 1924
|||||||||||||||| | ||||||||||| |||||||||| ||||||||
Sbjct 1930 TAACTAGCTAAAGTTAATA-TTCTCTCAGTCATGCTCCTTGACTACTAATT 1979
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1 TCCAAAAGTCTATTCAAATGGCAGAGACA 29
|||||||||||||||||||||||||||||
Sbjct 1 TCCAAAAGTCTATTCAAATGGCAGAGACA 29
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95280634410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5