BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493582
Length=1796
Score E
Sequences producing significant alignments: (Bits) Value
AT5G34940.2 | Symbols: AtGUS3, GUS3 | glucuronidase 3 | chr5:13... 2682 0.0
> AT5G34940.2 | Symbols: AtGUS3, GUS3 | glucuronidase 3 | chr5:13235829-13238839
REVERSE LENGTH=1815
Length=1815
Score = 2682 bits (1452), Expect = 0.0
Identities = 1687/1801 (94%), Gaps = 14/1801 (1%)
Strand=Plus/Plus
Query 1 TTTTTCGGAATGTGTGTCTGTCTTCCATTTCCATATATTATATAAACACCAAACGGAACG 60
||||| ||||||||||||| |||||||||||||||||||||||||||||| | || |
Sbjct 23 TTTTTTGGAATGTGTGTCTCTCTTCCATTTCCATATATTATATAAACACC--A---AATG 77
Query 61 AGATCTCA-TATTCTTATAAATAAAAAGAAAGAAGAGAGAAATAATGGGTTGTCGTCAAA 119
|||||||| | |||| |||||||| ||||||||||||||||| ||||| || ||||||||
Sbjct 78 AGATCTCATTTTTCTAATAAATAAGAAGAAAGAAGAGAGAAACAATGGCTTATCGTCAAA 137
Query 120 -TTTGGATCATAGTTTTGTTTCTTTGTGTGTTTCAATTCTTGGACTGCACCGTTAGCTCC 178
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 138 TTTTGG-CCATAGTTTTGTTTCTTTGTGTGTTTCAATTCTTGGACTGCACTGTTAGCTCC 196
Query 179 GCCGTAGAAGAGACTGGGACGGTGTTTGTGTACGGAAGAGCGGCCGTGGGAACAATAGAC 238
||||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 197 GCCGTAGAAGAGAATGGGACTGTGTTTGTGTACGGAAGAGCCGCCGTTGGAACAATAGAT 256
Query 239 GAAGACTTCATTTGCGCCACCTTAGACTGGTGGCCACCGGAGAAATGTGACTACGGCACT 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 257 GAAGACTTCATTTGCGCCACCTTAGACTGGTGGCCACCGGAGAAATGTGACTACGGCAGT 316
Query 299 TGTAGTTGGGACCATGCTTCCATTCTTAATCTGGACTTGAACAACACTATCCTTCAAAAT 358
|||||||||||||||||||| ||||| |||||||| ||||||||| ||| |||||||||
Sbjct 317 TGTAGTTGGGACCATGCTTCAATTCTCAATCTGGATTTGAACAACGTTATTCTTCAAAAT 376
Query 359 GCAATCAAAGCATTTTCTCCATTGAAAATAAGAATAGGAGGAACATTACAAGACATAGTC 418
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 377 GCAATCAAAGCATTTGCTCCGTTGAAAATAAGAATAGGAGGAACATTACAAGACATAGTG 436
Query 419 ATATATGAGACACCAGA-TCAGAAGCAACCATGTCTTCCTTTTACCAAAAACTCTTCAAT 477
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 437 ATATATGAGACACCAGATTC-GAAGCAACCATGTCTTCCTTTTACCAAAAACTCTTCAAT 495
Query 478 TCTCTTTGGTTACACACAAGGATGTCTACCTATGCGTCGATGGGATGAGCTCAATGCCTT 537
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 496 TCTTTTTGGTTACACACAAGGATGTCTACCTATGCGTCGATGGGACGAGCTCAATGCCTT 555
Query 538 CTTTCGAAAAACCGGAGCTAGAGTCATCTTTGGACTGAATGCACTCTCTGGGCGTTCCAT 597
|||||| ||||||||| ||| ||||||||| || ||||||||||| ||||| ||||||||
Sbjct 556 CTTTCGCAAAACCGGAACTAAAGTCATCTTCGGGCTGAATGCACTTTCTGGACGTTCCAT 615
Query 598 AAAACCAAACGGCGAAGCCATAGGAGCCTGGGACTACAGCAATGCTGAATCATTCATCCA 657
|||| | ||||| |||||||||||||||||| | |||| |||||||||||| |||||||
Sbjct 616 AAAATCTAACGGTGAAGCCATAGGAGCCTGGAATTACACCAATGCTGAATCGTTCATCCG 675
Query 658 ATTTACAGCACAGAATAACCACACCATCGACGGGTGGGAGCTCGGCAATGAGCTGTGTGG 717
||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 676 GTTTACAGCAGAGAACAATTACACCATCGACGGGTGGGAGCTCGGCAATGAGCTGTGTGG 735
Query 718 AAGTGGTGTTGGTGCACGAGTTGCAGCAAATCAGTATGCTATAGACACCATAAATCTACG 777
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 736 AAGTGGTGTTGGTGCACGAGTTGGTGCAAATCAATATGCTATAGACACCATAAATCTGCG 795
Query 778 AAACATCGTGAACCGGGTTTACAATAATGTGAGTCCCATGCCGTTGGTGATAGGTCCGGG 837
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 796 AAACATTGTGAACCGGGTTTACAAGAATGTGAGTCCCATGCCGTTGGTGATAGGTCCGGG 855
Query 838 TGGCTTCTTTGAAGTTGATTGGTTCACAGAATACCTGAACAAAACAGAAGACTCTCTCAA 897
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 856 TGGCTTCTTTGAAGTTGATTGGTTCACAGAATACCTGAACAAAGCAGAAAACTCTCTCAA 915
Query 898 TGCTACTACTCGGCATATCTACGATCTCGGTCCAGGAGTTGATGAACATCTGATAGAAAA 957
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 916 TGCTACTACTCGACATATCTACGATCTCGGTCCAGGAGTCGATGAACATCTGATAGAAAA 975
Query 958 GATTCTTAACCCTTCATATCTGGACGGAGAGGCAATAACG-TTTCGCAG-CGTCAAGAAG 1015
|||||| |||||||||||||||||| |||||||| || | |||||||| | |||||||
Sbjct 976 GATTCTAAACCCTTCATATCTGGACCAAGAGGCAA-AAAGTTTTCGCAGTC-TCAAGAAC 1033
Query 1016 ACAATaaaaaaaTCCTCAACCAAGGCCGTGGCATGGGTTGGTGAATCTGGTGGTGCCTAC 1075
| ||| ||||| |||||||| ||||| ||||||||||||||||| || ||||||||||||
Sbjct 1034 ATAATCAAAAACTCCTCAACAAAGGCTGTGGCATGGGTTGGTGAGTCCGGTGGTGCCTAC 1093
Query 1076 AACAGCGGGCGGAATCTTGTCTCTAATGCTTTCGTGTATAGTTTCTGGTACCTGGACCAG 1135
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 AACAGTGGGCGGAATCTTGTCTCTAATGCTTTCGTGTATAGTTTCTGGTACCTGGACCAG 1153
Query 1136 CTTGGTATGGCATCGCTTTATGATACAAAAACATACTGTAGACAGTCTCTGATCGGAGGA 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 CTTGGTATGGCATCGCTTTATGATACAAAAACATACTGTAGACAGTCTCTGATCGGAGGA 1213
Query 1196 AACTATGGGCTGCTAAATACTACTAACTTCACACCAAATCCAGATTATTACAGTGCTCTG 1255
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1214 AACTATGGGCTGCTAAATACTACTAACTTCACACCAAATCCAGACTATTACAGTGCTCTG 1273
Query 1256 ATCTGGCGACAACTCATGGGAAGAAAGGCATTGTTCACAACCTTTTCCGGAACCAAAAAG 1315
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 ATCTGGCGACAACTTATGGGAAGAAAGGCATTGTTCACAACCTTTTCCGGAACCAAAAAG 1333
Query 1316 ATACGTTCATACACCCATTGTGCAAGACAATCAAAAGGGATTACAGTTTTACTGATGAAC 1375
|||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1334 ATACGTTCGTACACCCATTGTGCAAGACAATCGAAAGGGATCACAGTTTTACTGATGAAC 1393
Query 1376 CTTGACAACACTACGACGGTTGTAGCGAAAGTAGAGTTAAATAAGACTTTCAGTCTAAGA 1435
|||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 1394 CTTGACAATACTACAACGGTTGTAGCGAAAGTAGAGTTAAATAACAGTTTCAGTCTGAGA 1453
Query 1436 CATACAAAGCACATGAAGTCTTATAAAAGAGCAACTTCCCAACTTCCACAGGATCCTAAT 1495
|||||||||||||||||||||||||||||||||| |||||||||| || |||||||
Sbjct 1454 CATACAAAGCACATGAAGTCTTATAAAAGAGCAAGTTCCCAACTTTTTGGGGGTCCTAAT 1513
Query 1496 GGGGAAATCCAAAGAGAAGAGTACCATTTGACAGCAAAGGATGGAAACTTACACAGTCAG 1555
|| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1514 GGAGTAATCCAAAGAGAAGAGTACCATTTGACAGCAAAGGATGGAAACCTACACAGTCAG 1573
Query 1556 ACTATGCTACTCAATGGAAATGCTCTTCAGGTTAATTTGACGGGTGACTTACCTCCTATA 1615
|||||||||||||| |||||||||||||||||||||| || |||||| ||||||||||||
Sbjct 1574 ACTATGCTACTCAACGGAAATGCTCTTCAGGTTAATTCGATGGGTGATTTACCTCCTATA 1633
Query 1616 GAGCCGATACATATAAATTCAACAGAGCCAATAACAATAGCTCCATATTCCATTGTGTTT 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1634 GAGCCGATACATATAAATTCAACAGAGCCAATAACAATAGCTCCATATTCCATTGTGTTT 1693
Query 1676 GTGCATATGCGGAGTGTTGTTGTACCTGCATGTGCTTAAGGTAGCTGCATATGGAACTTA 1735
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1694 GTGCATATGCGGAATGTTGTTGTACCTGCATGTGCTTAAGGTAGCTGCATATGGAACTTA 1753
Query 1736 AGACAGTTCCTCCATTCAGTTATTTGATCAGAGAAAAAGAAAGAAGTGTACCTTTCTTTC 1795
||||||||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct 1754 AGACAGTTCCTTCATTCAGTTATTTGATTAGAGAAAAATAAAGAAGCGTACCTTTCTTTC 1813
Query 1796 A 1796
|
Sbjct 1814 A 1814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88854964650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5