BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493583
Length=949
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35080.1 | Symbols: | INVOLVED IN: biological_process unkno... 1410 0.0
> AT5G35080.1 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Mannose-6-phosphate receptor, binding (InterPro:IPR009011),
Glucosidase II beta subunit-like (InterPro:IPR012913);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink). | chr5:13354273-13356817 REVERSE LENGTH=1220
Length=1220
Score = 1410 bits (763), Expect = 0.0
Identities = 892/954 (94%), Gaps = 10/954 (1%)
Strand=Plus/Plus
Query 3 CTCATCGTCTACCTCGCCGTCGCCTGTTACCGCCCGGTGC---TC-GCTTCACAATCTCA 58
|||||||||||| ||||||||||||||||||| ||||||| || |||||||||||||
Sbjct 11 CTCATCGTCTACATCGCCGTCGCCTGTTACCGTCCGGTGCTATTCTCCTTCACAATCTCA 70
Query 59 GTTTTTTCTTGCCGG-TATGAAGATGAGAATCACGGAGATCTTGTTGTGTCTGGTAATAG 117
|||||| | |||| || |||||||||||||||| |||||||||| |||||||||||||
Sbjct 71 CATTTTTCGTACCGGTTA-GAAGATGAGAATCACGCAGATCTTGTTATGTCTGGTAATAG 129
Query 118 TTGCATTGTGC-TCAAGCTCCCATGTCTGGTCGGATCAGATCTTCCCAGCTCATCTAGTT 176
| ||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 130 TGGCATTGT-CTTCAAGCTCCCATGTCTGGTCCGATCAGATCTTCCCAGCTCATCTAGTT 188
Query 177 GGAACATTCAGCAGAAACAATCGTGAACCAAAGTACAAGATTGAGTTTCTCCCTGAAGAT 236
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 189 GGAACATTCAGCAGAAACAATCGTGAACCAAAGTACAAGATTGAGTTCCTTCCTGAAGAT 248
Query 237 TCACCTTTTCACCCGGGTGATAATCTGGAATCTATGGTTATGTTGGATAAGCATGGGAAT 296
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 249 TCACCTTTTCACCCGGGTGATAATCTGGAATCAATGGTTATGTTGGATAAGCATGGAAAT 308
Query 297 CGATTTTTATGTTACTTACCGAAAGAGGAAAAACCAACGAGTGGATGGACTTCTAGTCAG 356
|| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 309 CGGTTTTTATGTTACTTACCGAAAGAGGAAAAAGCGACGAGTGGATGGACTTCTAGTCAG 368
Query 357 CAAAATATTAGTACTGTGATGATGGAAACACAGAAACAGGTGAAGCTAAAGACTCCTGAT 416
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 369 CAAAATATTAGTACTGTGATGATGGAAACACAGCAACTGGTGAAGCTAAAGACTCCTGAT 428
Query 417 GAATTGCTTCAACCACTTGGTGAAAAATGTCTTTTTAGGCAAGAAGGTTGGTGGTCTTAT 476
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 429 GAATTGCTTCAACCACTTAGTGAAAAATGTCTTTTTAGGCAAGAGGGTTGGTGGTCTTAT 488
Query 477 GAGTTTTGTCATCAGAAGTTTGTACGGCAGCTACACGTTGAGGATGAAAACAAGATTGTA 536
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 489 GAGTTTTGTCATCAGAAGTATGTGCGGCAGCTACACGTTGAGGATGAAAACAAGATTGTT 548
Query 537 CAAGAGTTTTTCTTAGGTACGTTTGACCCAGAGGCAACTGCAGCGTTTAATCAAACAGTA 596
||||||||||| || ||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 549 CAAGAGTTTTTTTTGGGTACTTTTGACCCAGAGGCAACTGCGGCGTTTAATCAAACTGTT 608
Query 597 TCTGATATTTCGACTGATGCTTCT-GGCAGGTATCACTCTCATGTATACACCAATGGGAC 655
|||||| ||| |||||||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 609 TCTGATGCTTCAACTGATGCATCTCAG-AGGTATCACTCTCATGTATACACCAATGGGAC 667
Query 656 CACCTGTGATCTTACAGGGTCACCTCGAGAAGTCGAGGTGAGGTTTGTCTGTGCAGAAAC 715
|||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||
Sbjct 668 CACCTGTGATCTTACAGGATCACCTCGCGAAGTCGAGGTGAGGTTTGTATGCGCAGAAAC 727
Query 716 CAGGGCAATGGTCACTTCGATCACTGAGCTATCCACTTGCAAGTACGCACTGACTGTTCA 775
||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||
Sbjct 728 AAGGGCAATGGTCACTTCAATCACTGAATTATCAACTTGCAAGTACGCACTGACTGTTCA 787
Query 776 GTGCCCAACCTTGTGCAAGCATCCGCTGTTCCAGCTAGAGAAACCAGTGTCACACACGAT 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 GTGCCCAACCTTGTGCAAGCATCCGCTGTTCCAGCTAGAGAAACCAGTGTCACACACGAT 847
Query 836 CCACTGCAATGCGATCCCAGTGGAACAAGACGCAACAAGAAGCAATGAAGAACAAATAGT 895
||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||| |||
Sbjct 848 CCACTGCAATGCGATCCCAGTGGAAGAAGACGCAACAAGAAACAAGGAAGAACAAGCAGT 907
Query 896 AGGCGAATCACCTAAGATGATAGCTGATTCTTGAAAACTGCCTAAGTGAATCAC 949
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 908 AGACGAATCACCTAAGATGATAGCTGATTCTTGAAAACCGCCTAAGTGAATCAC 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46416351828
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5