BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493584

Length=521
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G35090.1 | Symbols:  | unknown protein; Has 1807 Blast hits ...   649    0.0  


> AT5G35090.1 | Symbols:  | unknown protein; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:13358414-13359088 
FORWARD LENGTH=675
Length=675

 Score =  649 bits (351),  Expect = 0.0
 Identities = 463/513 (90%), Gaps = 24/513 (5%)
 Strand=Plus/Plus

Query  1    AAAGAATGGGAAGCGAATCAATGAGCC-ACTTGTCTCTA-AAGAAAAAACTCAAATCAAG  58
            ||| ||||||||||||| |||||| || ||||||||||| || || ||||||||||||||
Sbjct  118  AAAAAATGGGAAGCGAAACAATGA-CCAACTTGTCTCTACAA-AAGAAACTCAAATCAAG  175

Query  59   GTTTTGCATCGCCGGATGTTTTCGTACGACC-A--ATCACCA-C-C-ACAACATCCCCGA  112
            ||||||||||||||||||||||||||||||| |  ||||||| | | ||||||| |||||
Sbjct  176  GTTTTGCATCGCCGGATGTTTTCGTACGACCAATCATCACCACCACGACAACATTCCCGA  235

Query  113  CGACCTGCCATCATCCCCGATGACTCCGGCCACCACCGAGAAATCTACACAAAGCCCACA  172
            |||||| ||||||||||||  |  |     ||||||||||||||||||||||||||||||
Sbjct  236  CGACCTACCATCATCCCCG--G--T-----CACCACCGAGAAATCTACACAAAGCCCACA  286

Query  173  TGGTGGTGAAATTAAGACCAAATCACCAAGACTCACTAGGACGTTGTCCAAGTCACATGA  232
            |||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  287  TGGTGGTGGAATGAAGACCAAATCTCCAAGACTCACTAGGACGTTGTCCAAGTCACATGA  346

Query  233  AAAGTGCAAGAGTCTGATCCATCGAATGGGCGGTGGGGTTA-CCGGCGTTGGCGGCCACG  291
            ||| || ||||||||||||||||||||||||||||| | ||   ||||||||||| ||||
Sbjct  347  AAAATGTAAGAGTCTGATCCATCGAATGGGCGGTGGAG-TAGGTGGCGTTGGCGGTCACG  405

Query  292  GGAAGCATATTCGCCGCCATACTGCTGACTTTCATTACGATCCGTCGAGCTATGCGCTTA  351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  406  GGAAGCATATTCGCCGCCATACTGCTGACTTTCATTACGATCCGTCGAGCTATGCGCTTA  465

Query  352  ACTTTGATAAAGGAGACGAGGACGAAAATATCGACCGCTTTCCGCTCCGCAACTTCTCCG  411
            |||||||||||||||| ||||| || ||||||||||| |||||||| || ||||||||||
Sbjct  466  ACTTTGATAAAGGAGATGAGGATGACAATATCGACCGTTTTCCGCTACGTAACTTCTCCG  525

Query  412  CTAGGCTGCCTCGTTCGCCGCCTTCTTCGGCCAAGGCTGCGACGGAGTCTTCGTATACGG  471
            |||||||||||| ||| ||||||||||||||||||||  || |||| |||||||||||||
Sbjct  526  CTAGGCTGCCTCATTCACCGCCTTCTTCGGCCAAGGC--CG-CGGATTCTTCGTATACGG  582

Query  472  TTCAAAACCTTTTGCGTTAATGATTGAATCACA  504
            |||||||||||||||| ||| || |||||||||
Sbjct  583  TTCAAAACCTTTTGCGGTAAAGAATGAATCACA  615



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24916136912


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5