BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493585
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35100.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-... 1511 0.0
> AT5G35100.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans
isomerase family protein | chr5:13360283-13361389 REVERSE
LENGTH=1034
Length=1034
Score = 1511 bits (818), Expect = 0.0
Identities = 977/1051 (93%), Gaps = 21/1051 (2%)
Strand=Plus/Plus
Query 1 TCATCATCCAACATGGCATCATCATCAATCCTCATCCCTCCAATTCTCACCCGTCGTAAT 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 TCATCATCCAACATGGCATCATCATCAATCCTCATCCCTCCGATTCTCACCCGTCGTAAT 60
Query 61 ctcctcctctccaccaccatcgccaccgtatctccaccaccacctcctaaaccacctTCC 120
||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||
Sbjct 61 CTCCTCCTCTCCACCACAATCGCCACCGTAACTCCACCACCACCAGCTAAACCACCTTCC 120
Query 121 CCTGACATCACAATCACCGATCGCGTCTTCCTCGACTTCTCCCTCTGTCCCACCTACTTC 180
|| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 121 CCCGACATCACAATAACCGATCGAGTCTTCCTCGACTTCTCCCTCTGCCCCACCTACTTC 180
Query 181 CGCTCAGATCCCTCCGCCACACTCTCCTCCACCACACCTTGCTCCGATTCAACTCCTCTC 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGCTCAGATCCCTCCGCGACACTCTCCTCCACCACACCTTGCTCCGATTCAACTCCTCTC 240
Query 241 GGCCGCGTCGTTCTCGGATTATACGGCCGTCACGTTCCCATCACTGTTTCAACTTTCAAA 300
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 241 GGCCGCGTCGTTCTCGGATTATACGGCCGTCACGTTCCCATAACCGTCTCAACTTTCAAA 300
Query 301 CGTATGTGTACTTCTTCTTCTACTTCTTACAAAAACACTCCTGTCCACAAAATCTTCCCT 360
|||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 301 CGTATGTGTACTTCATCTTCCACATCTTACAAAAACACACCTGTCCACAAAATCTTCCCT 360
Query 361 GGTCAGTATTTTCTCGCCGGAAGACAAGGAGGAGGACGACGAGATACGGCGGAGGTTGGA 420
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 GGTCAGTATTTTCTCGCCGGAAGACAAGGAGGAGGACGGCGAGATACGGCGGAGGTTGGT 420
Query 421 TATTCACTTAGAGATTTGCCTCGGAACACTGACGTTGTTAATTCTAAAGCTTTTTTGCTT 480
|||||||| ||||| || ||||| ||||| |||||||||||||| ||||||||||| |||
Sbjct 421 TATTCACTCAGAGACTTACCTCGTAACACCGACGTTGTTAATTCCAAAGCTTTTTTACTT 480
Query 481 CCTCATGCTCGTGCTGGTGTTGTTTCTCTTTGTTTATCTGAGAATGATGATGATGATGAC 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCTCATGCTCGTGCTGGTGTTGTTTCTCTTTGTTTATCTGAGAATGATGATGATGATGAT 540
Query 541 ACTAGACTCGATCCTGATTATAGAAATGTTGAATTCTTAATCACTACCGGTCCTGGACCG 600
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 ATTAGACTCGATCCTGATTATAGAAATGTTGAATTCTTAATCACTACTGGTCCTGGACCG 600
Query 601 TGTCCGCAGCTCGATGGCGGTAACATTGTATTCGGAACTGTTCTTGAAGGATTAGATGTG 660
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTCCGCAGCTCGATGGCGGTAACATTGTATTCGGAACTGTTCTTGAAGGATTAGATGTA 660
Query 661 GTGACCAGTATATCTTCGATTCCCACGTATAAGCCGTCGGAGAATATTAAACAGTTTAAC 720
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 GTGACGAGTATTTCTTCGATTCCGACGTATAAGCCGTCGGAGAATATTAAACAGTTTAAC 720
Query 721 GATTTTGCGGAGTTTCTTGGGGATGAGAGAGCTCAAAACGCTAGATCTTTGTGGAATAGA 780
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 721 GATTTTGCGGAGTTTCTTGGAGACGAGAGAGCTCAAAACGCGAGATCTTTGTGGAATAGA 780
Query 781 CCTCTCAAGACAATTTACATTAGTGGCTGTGGAGAGCTCAAGGTCACTAATCCTTCACTT 840
||| | ||||| ||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 781 CCTTTGAAGACGGTTTTCATTAGTGGCTGTGGAGAGCTTAAGGTCACTAATCCTTCACTC 840
Query 841 TCTCCAACTCTGCCTTAATTATCTTATATTCGtatatatatatatatatatatatGTGCG 900
||||||||| ||||||||||||| ||| ||||||||||||||||| | | |||
Sbjct 841 TCTCCAACTTTGCCTTAATTATCGTATCTTCGTATATATATATATGTGT------GTG-- 892
Query 901 TGTCAAAT-TGTGTTTATAATCATTATTTACAATCCTGCTTCTTCTACTATATGAAAATC 959
|||||||| | ||||||||||||| || | | ||||||||||||||||||||||
Sbjct 893 TGTCAAATCT-TGTTTATAATCATGCTT--C--T---GCTTCTTCTACTATATGAAAATG 944
Query 960 AAATTGTAATTTAATCCTACTCTGGTGGTTGCTAAAGATTAAG-ATAGAGAAGAGCTTAT 1018
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 945 AAATTGTAATTTAATCCTACTCTGGTGGTTGCTAAAGATTA-GTATAGAGAAGAGCTTAT 1003
Query 1019 A-A-TCAAAACATTGAGGTTGTTGTTGTTTG 1047
| | ||| |||||||||||||||||||||||
Sbjct 1004 ATAATCATAACATTGAGGTTGTTGTTGTTTG 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51339298234
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5