BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493590
Length=1990
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35170.1 | Symbols: | adenylate kinase family protein | chr... 1509 0.0
> AT5G35170.1 | Symbols: | adenylate kinase family protein | chr5:13419166-13423746
FORWARD LENGTH=2143
Length=2143
Score = 1509 bits (817), Expect = 0.0
Identities = 864/887 (97%), Gaps = 2/887 (0%)
Strand=Plus/Plus
Query 931 ATAAAGCATCTCCTGTTCAGGACAAATGGAGAGGAATACCGACGAGATTGAATAACATTC 990
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 993 ATAAAGCATCTCCTGTTCAGGATAAATGGAGAGGAATACCGACGAGATTGAATAACATTC 1052
Query 991 CTCATTCGAGAGATATCAGGGCTTATTTTTATGAAGATGTGCTACAAGCCACAATTAGAT 1050
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1053 CACATTCGAGGGATATCAGGGCTTATTTTTATGAAGATGTGCTGCAAGCCACAATTAGAT 1112
Query 1051 CTATCAAGGATGGAAACACCCGTCTTCGGGTGGACATAAATATCCCTGAGCTTAATCCGG 1110
||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1113 CTATCAAGGATGGTAACACCCGTCTTCGGGTGGACATTAATATCCCTGAGCTAAATCCGG 1172
Query 1111 AAATGGATGTTTACCGGATAGGAACCTTGATGGAACTTGTTCGTG-TTCTAGCTTTATCA 1169
|||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 1173 AAATGGATGTTTACCGGATAGGAACCTTGATGGAACTTGTTCAAGCTT-TAGCTTTATCA 1231
Query 1170 TTCGCTGACGATGGAAAAAGAGTGAAGGTTTGTGTTCAGGGATCAATGGGGGAAGGTGCA 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 TTCGCTGACGATGGAAAAAGAGTGAAGGTTTGTGTTCAGGGATCAATGGGGGAAGGTGCA 1291
Query 1230 CTCGCTGGGATGCCATTGCAGTTGGCAGGCACTCGAAAGATTTTAGAATATATGGACTGG 1289
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 CTTGCTGGGATGCCATTGCAGTTGGCAGGCACTCGAAAGATTTTAGAATATATGGACTGG 1351
Query 1290 GGTGATGATGAAACTTTGGGAACTTTCGTCAAGCTTGGTGCAATTGGTGGTAAAGAAGTT 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 GGTGATGATGAAACTTTGGGAACTTTCGTCAAGCTTGGTGCAATTGGTGGTAAAGAAGTT 1411
Query 1350 GATGAAGAAGACGACATGTTCATCTTAGTGGCTCCACAAAATGCTGTTGGAAACTGTATT 1409
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1412 GATGAAGAAGATGACATGTTCATCTTAGTGGCTCCACAAAATGCCGTTGGAAACTGTATT 1471
Query 1410 ATAGATGATCTTCAAGCGATGACTACTGCTGCTGGGAAAAGGCCAGTTGTACTTATCAAT 1469
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 ATAGATGATCTACAAGCGATGACTACTGCTGCTGGGAAAAGGCCAGTTGTACTTATCAAT 1531
Query 1470 CCTCGCCTCAAGGACTTGCCCGCTTCAAGTGGCATAATGCAAACAATGGGCAGGGAGCAA 1529
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1532 CCTCGCCTCAAGGACTTGCCCGCTTCGAGTGGCATAATGCAAACAATGGGCAGGGAGCAA 1591
Query 1530 AGGCTGGAATATGCCTTAACGTTTGACAACTGCTATGTATTCCGGCTTCTCTATTATTTG 1589
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 AGGCTGGAATATGCTTTGACGTTTGACAACTGCTATGTATTCCGGCTTCTCTATTATTTG 1651
Query 1590 GGAACACAATACCCGATTATGGGCGCTCTAAGGATGTCTTATCCTTACCGGTATGAGCTT 1649
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1652 GGAACACAATACCCGATTATGGGCGCTCTAAGGATGTCTTATCCATACCGGTATGAGCTT 1711
Query 1650 TATAAGAGAGTGAATGAGGAAAATGGAAAGGAGAAATATGTCTTGCTAGCAACGTACTCT 1709
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1712 TATAAGAGAGTGAACGAGGAAAATGGAAAGGAGAAATATGTCTTGCTAGCAACGTACGCT 1771
Query 1710 GAAAGACCAACCCCTGAACAAATCGACGATGCCTTCTCTGGAAAATCGCGGGATCAAAGC 1769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1772 GAAAGACCAACCCCTGAACAAATCGACGATGCCTTCTCTGGAAAATCGCGGGATCAAAGC 1831
Query 1770 AAGAAGCCGTCAGGAATCTGGGGGTTCTTGAGCAGCGTGTTTTCGTA 1816
|||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1832 AAGAAGGCGTCAGGAATCTGGGGGTTCTTGAGTAGCGTGTTTTCGTA 1878
Score = 1277 bits (691), Expect = 0.0
Identities = 830/895 (93%), Gaps = 18/895 (2%)
Strand=Plus/Plus
Query 18 GAGGAGTTAACAATGGCGtctctatctctcacctctgctcatttctcttcaacttcttct 77
||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 101 GAGGATTTAACAATGGCGTCTCTTTCTCTCAGTTCTGCTCATTTCTCTTCAACTTCTTCT 160
Query 78 tcgtctcgctcctctGTTTCCACTTCATCGCTTTCTCCGTCCACTCCTTCTCTCCCTCTC 137
|| |||||||||||| | ||||||||||||||||||||||| | ||||||||||||||
Sbjct 161 TCATCTCGCTCCTCTATATCCACTTCATCGCTTTCTCCGTCGTCAACTTCTCTCCCTCTC 220
Query 138 TTACGATCACC-A-------CCG--A----T-CCGCCGCCGTCGTCTCTCCTTCTCTTTC 182
|||| |||||| | ||| | | || |||||| |||||||||||||| ||
Sbjct 221 TTACAATCACCGATCCGCCGCCGTTACCGCTCCCTCCGCCGCCGTCTCTCCTTCTCCGTC 280
Query 183 ATACCCCGTCGTACTTCTCACTCCGTCTCCACTTCCAGTTCTTCTCAGATTAGGTGTTCG 242
|| |||||||| ||||||| |||| |||||||||||| |||||||||||||||||||
Sbjct 281 ATTCCCCGTCGGACTTCTCGCTCCTTCTCCACTTCCA---ATTCTCAGATTAGGTGTTCG 337
Query 243 ATAGATGAGCCATTGAAGGTGATGATTTCGGGTGCACCGGCTTCAGGAAAAGGCACTCAA 302
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 ATAAATGAGCCGTTGAAGGTGATGATTTCGGGTGCACCGGCTTCAGGAAAAGGCACTCAA 397
Query 303 TGTGAGCTCATTGTTCATAAGTTTGGTTTGGTGCACATATCAACGGGGGATCTATTGAGG 362
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 398 TGTGAGCTCATTGTTCACAAGTTTGGTTTGGTGCACATATCAACAGGGGATCTATTGAGA 457
Query 363 GCTGAAGTGTCAGCTGGGACAGATATTGGAAACAGAGCAAAAGAGTTCATGAATTCGGGT 422
|| || |||||| ||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 458 GCAGAGGTGTCATCTGGGACAGATATTGGAAAGAGAGCAAAAGAGTTCATGAACTCGGGT 517
Query 423 AGTTTGGTTCCGGATGAGATTGTCATTGCGATGGTGGCTGGAAGATTATCACGTGAAGAT 482
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 518 AGTTTGGTTCCTGATGAGATTGTTATAGCGATGGTGGCTGGAAGATTATCACGTGAAGAT 577
Query 483 GCTAAAGAACAAGGATGGCTTCTTGATGGATTTCCACGGAGTTTTTCCCAGGCACAAAGT 542
|||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 578 GCTAAAGAGCATGGATGGCTTCTTGATGGATTTCCACGGAGTTTTGCCCAGGCACAAAGT 637
Query 543 CTGGATAAACTGAACGTGAAACCTGACATTTTTCTCTTACTAGATGTTCCTGATGAAATT 602
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 638 CTGGACAAACTGAACGTGAAACCTGACATTTTTATCTTACTAGATGTTCCTGATGAAATT 697
Query 603 CTGATTGATAGATGTGTTGGTAGAAGGTTGGATCCAGTGACAGGAAAAATTTATCATATT 662
||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 698 CTGATCGATAGATGTGTTGGTCGAAGGTTGGATCCAGTGACTGGAAAAATTTATCATATC 757
Query 663 AAAAATTACCCTCCTGAATCAGATGAAATTAAAGCAAGACTGGTCACACGCCCTGATGAT 722
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 758 AAAAATTACCCTCCTGAATCAGATGAAATTAAAGCAAGACTGGTTACACGCCCGGATGAT 817
Query 723 ACAGAGGAGAAGGTAAAAGCACGTCTGCAAATATACAAACAAAATTCTGAAGCGATTATT 782
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 818 ACAGAGGAGAAGGTAAAAGCACGGCTGCAAATATACAAACAAAATTCTGAAGCGATTATT 877
Query 783 TCAGCATACTCAGATGTTATGGTCAAGATTGATGCAAACAGGCCAAAAGAAGTGGTTTTC 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 TCAGCATACTCAGATGTTATGGTCAAGATTGATGCAAACAGGCCAAAAGAAGTGGTTTTC 937
Query 843 GAGGAGACCCAGACTCTACTGTCCCAGATACAGTTAAAGAGAATGATAAAGACTG 897
||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 938 GAGGAGACCCAGACTCTACTGTCTCAGATACAGTTAAAGAGAATGATAAAGACTG 992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98593870380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5