BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493599
Length=1782
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35220.1 | Symbols: EGY1 | Peptidase M50 family protein | ch... 2737 0.0
AT5G35210.1 | Symbols: | metalloendopeptidases;zinc ion bindin... 1123 0.0
> AT5G35220.1 | Symbols: EGY1 | Peptidase M50 family protein |
chr5:13484431-13487584 REVERSE LENGTH=1860
Length=1860
Score = 2737 bits (1482), Expect = 0.0
Identities = 1688/1787 (94%), Gaps = 16/1787 (1%)
Strand=Plus/Plus
Query 1 tctctctctctcCACTCCAATGGGGACTCTCACCAGCGTCGCTTTTGCAGCTGCCGTTAA 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 20 TCTCTCTCTCTCCACTCCAATGGGGACTCTCACCAGCGTCGCTTTTGCCGCTGCCGTTAA 79
Query 61 CATCAGATTCCGATCATTTCACCGGGAAAACATTAAGACAGC-A--ACAACGCTGCCCAA 117
||| |||||||||||||||||||||||||||||||||||| | | ||||| ||||||||
Sbjct 80 CATTAGATTCCGATCATTTCACCGGGAAAACATTAAGACAACAATTACAACTCTGCCCAA 139
Query 118 ATGGCAAAAGAGACTCTGTTTCTCTTCTACAGAGGATTCTCATAGATTTAGGATTGCAAA 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 ATGGCAAAAGAGACTCTGTTTCTCTTCTACAGAGGATTCTCATAGATTTAGGATTGCAAA 199
Query 178 GTGTTTAGGCAATGACGAAAACAGTAACAGAGACAACAGTGTCGGAGATAACGGAGAAAC 237
|||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 200 GTGTTTAGGCAATGACGAAAACAGTAACAGAGACGACAGTATCGGAGAAAACGGAGAAAC 259
Query 238 CCACAAGTCTTCGGTTGCTAAAACGGCTTCGCGTGAAGAAGAAGATGACGAGACAAGTAA 297
||||||||||||||||| ||||||||| || ||||||||||||||| |||||||||||
Sbjct 260 CCACAAGTCTTCGGTTGTTAAAACGGCAACGTTTGAAGAAGAAGATGAAGAGACAAGTAA 319
Query 298 CAGTAGTTCTACTACTATCAGCAGCAACGAGTTTGGTTCCGACAAGACTTCAATGCCATC 357
||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 320 GAGTAGCTCTACTACTAGCAGCAGCAACGAGTTCGGTTCCGACAAGACTTCAATGCCATC 379
Query 358 AAGTGATTCGCCTGTTGATCCGACATACAGTAGCTTCCAAATAGATTCGTTTAAGTTGAT 417
| | || ||||||| ||||| ||||||||||||||||||||||||||| | ||
Sbjct 380 -A---A-----CTATTGATCCAACATATAGTAGCTTCCAAATAGATTCGTTTAAGCTAAT 430
Query 418 GGAGCTTCTTGGACCTGAGAAAGTAGATCCTGCTGATGTCAAGTTAATAAAGGACAAACT 477
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 431 GGAGCTTCTTGGACCAGAGAAAGTAGATCCTGCAGATGTCAAGTTAATAAAGGACAAACT 490
Query 478 TTTCGGTTATTCGACATTTTGGGTGACTAAAGAAGAGCCATTTGGGGACCTTGGAGAGGG 537
||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 491 TTTCGGTTATTCGACATTTTGGGTGACGAAAGAAGAGCCATTTGGGGACCTTGGGGAAGG 550
Query 538 AATACTCTTTCTTGGGAACTTGAGAGGAAAGAAGGAAGATGTTTTTGCAAAACTTCAGAG 597
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 551 AATTCTCTTTCTTGGGAACTTGAGAGGAAAGAAAGAAGATGTTTTTGCAAAACTTCAGAG 610
Query 598 AAAACTAGCTGAAGTTGCTGGCGATAAATATAATTTATTTATGATTGAGGAGCCTAACTC 657
|||||||| |||||||||| | ||||||||||||||||| ||||||||||||||||||||
Sbjct 611 AAAACTAGTTGAAGTTGCTAGTGATAAATATAATTTATTCATGATTGAGGAGCCTAACTC 670
Query 658 AGAAGGACCAGATCCTCGTGGTGGTGCTCGTGTTAGCTTTGGTTTGCTTCGTAAAGAAGT 717
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 671 AGAAGGACCTGATCCTCGCGGTGGTGCTCGTGTTAGCTTTGGTTTGCTTCGTAAAGAAGT 730
Query 718 CTCCGAGCCAGGACCAACCACACTCTGGCAGTATGTGATTGCTTTAATATTATTTCTTTT 777
|| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 731 TTCGGAGCCTGGACCAACTACACTCTGGCAGTATGTGATTGCTTTAATATTGTTTCTTTT 790
Query 778 GACAATTGGTTCCTCTGTGGAGCTAGGAATTGCTTCTCAGATTAACCGCTTACCTCCTGA 837
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 791 GACTATTGGTTCCTCTGTGGAGTTAGGAATTGCTTCTCAGATTAACCGCTTACCTCCTGA 850
Query 838 GGTGGTAAAGTATTTCACCGATCCAAATGCTGTTGAACCACCTGATATGGAGCTGCTATA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 851 GGTGGTAAAGTATTTCACCGATCCAAATGCTGTTGAACCACCTGATATGGAGCTGCTGTA 910
Query 898 TCCATTTGTAGATGCTGCTTTGCCTTTGGCATATGGTGTATTGGGAATACTTTTGTTTCA 957
|||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||
Sbjct 911 TCCATTTGTAGATGCTGCATTGCCTTTAGCTTATGGTGTATTGGGAATTCTTTTGTTTCA 970
Query 958 TGAATTAGGGCACTTTCTAGCTGCAGTTCCAAAGAAAGTTAAGCTTAGCATTCCTTACTT 1017
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 971 TGAATTAGGGCACTTTCTTGCTGCAGTTCCAAAGAAAGTTAAGCTTAGCATTCCATACTT 1030
Query 1018 CATTCCAAATATTACACTCGGCAGCTTTGGGGCGATCACACAGTTTAAGTCGATTCTTCC 1077
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1031 CATTCCAAACATTACACTCGGCAGCTTTGGGGCAATCACACAGTTTAAGTCGATTCTTCC 1090
Query 1078 TGACCGGAGTACAAAAGTTGACATTTCGCTAGCTGGTCCATTTGCTGGAGCTGCACTCTC 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 TGACCGGAGTACAAAAGTTGACATTTCGCTAGCTGGTCCATTTGCTGGAGCTGCACTCTC 1150
Query 1138 AGTATCCATGTTTGCTGTTGGTCTATTCCTATCTACAGAACCGGATGCAGCTAACGACCT 1197
||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1151 AGTTTCCATGTTTGCTGTTGGTCTGTTCCTATCTACAGAACCAGATGCAGCTAACGACCT 1210
Query 1198 GGTCCAGGTTCCAAGCATGTTATTCCAAGGTTCATTACTTCTTGGACTCATCAGCAGAGC 1257
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1211 GGTCCAGGTTCCCAGCATGTTATTTCAAGGTTCATTACTTCTTGGACTCATCAGCAGAGC 1270
Query 1258 AACTCTGGGATATGCAGCTTTGCATGCTGCGACAGTTTCAATCCACCCACTTGTAATTGC 1317
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1271 AACTCTGGGATATGCAGCTTTGCATGCTGCAACAGTTTCAATCCACCCACTTGTAATTGC 1330
Query 1318 TGGATGGTGTGGTTTAACAACAACAGCATTTAATATGCTTCCGGTGGGATGTTTGGATGG 1377
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1331 TGGATGGTGTGGTTTAACAACAACAGCATTTAATATGCTTCCAGTGGGATGTTTGGATGG 1390
Query 1378 AGGAAGAGCTGTACAGGGCGCATTCGGGAAAAATGCATTGGTTACATTTGGTTTGACAAC 1437
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1391 AGGAAGAGCTGTACAGGGAGCATTCGGGAAAAATGCATTGGTTACATTTGGTTTGTCAAC 1450
Query 1438 CTATGTAATGCTTGGACTCAGAGTGCTTGGCGGCCCTTTGGCACTTCCTTGGGGACTCTA 1497
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1451 CTATGTAATGCTTGGACTCAGAGTGCTCGGTGGCCCTTTGGCACTTCCTTGGGGACTCTA 1510
Query 1498 TC-TGCTAATCTGCCAGAGGACACCTGAAAAACCGTGTCTAAACGACGTGACCGAGGTTG 1556
| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1511 -CGTATTAATCTGCCAGAGAACACCTGAAAAACCGTGTCTAAACGACGTGACCGAGGTTG 1569
Query 1557 GAACATGGAGGAAAGCCCTTGTCGGGACTGCAATAATCCTGGTCATTTTGACGCTCCTGC 1616
|||| |||||||| |||||||| |||| |||| |||||||||| ||||||| |||||||
Sbjct 1570 GAACGTGGAGGAAGGCCCTTGTAGGGATTGCACTAATCCTGGTGGTTTTGACACTCCTGC 1629
Query 1617 CTGTATGGGACGAACTCGCAGAAGAGGTAGGCATAGGGCTTGTAACCACATTTTGATGTT 1676
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1630 CTGTATGGGACGAACTCGCAGAAGAAGTAGGCATAGGGCTTGTAACCACATTTTGATGTC 1689
Query 1677 GTCTTCTGTCTTTGAGCAGATGTTGTAGTTAGGGCCAATTCGCAG-CAAAtttttttttt 1735
||||| ||||||||||||| |||||||||||||||||| || || || |||||||| ||
Sbjct 1690 ATCTTCCGTCTTTGAGCAGACGTTGTAGTTAGGGCCAATCCG-AGACACATTTTTTTGTT 1748
Query 1736 ttGGCAATATTTAGATTGCTAGATATAATGAGCCATGTCTGTACACT 1782
||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1749 TTGGCAATATTTAGATTGCCAGATATAATGAGCCATGTATGTACACT 1795
> AT5G35210.1 | Symbols: | metalloendopeptidases;zinc ion binding;DNA
binding | chr5:13474196-13482591 REVERSE LENGTH=5687
Length=5687
Score = 1123 bits (608), Expect = 0.0
Identities = 709/757 (94%), Gaps = 10/757 (1%)
Strand=Plus/Plus
Query 1028 ATTACACTCGGCAGCTTTGGGGCGATCACACAGTTTAAGTCGATTCTTCCTGACCGGAGT 1087
|||||||| || |||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 4890 ATTACACTAGGAAGCTTTGGTGCAATCACACAGTTCAAGTCGATTCTTCCTGACCGGAGT 4949
Query 1088 ACAAAAGTTGACATTTCGCTAGCTGGTCCATTTGCTGGAGCTGCACTCTCAGTATCCATG 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 4950 ACAAAAGTTGACATTTCGCTAGCTGGTCCATTTGCTGGAGCTGCACTCTCAGTTTCCATG 5009
Query 1148 TTTGCTGTTGGTCTATTCCTATCTACAGAACCGGATGCAGCTAACGACCTGGTCCAGGTT 1207
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 5010 TTTGCTGTTGGTCTGTTCCTATCTACAGAACCAGATGCAGCTAACGACCTGGTCCAGGTT 5069
Query 1208 CCAAGCATGTTATTCCAAGGTTCATTACTTCTTGGACTCATCAGCAGAGCAACTCTGGGA 1267
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5070 CCCAGCATGTTATTTCAAGGTTCATTACTTCTTGGACTCATCAGCAGAGCAACTCTGGGA 5129
Query 1268 TATGCAGCTTTGCATGCTGCGACAGTTTCAATCCACCCACTTGTAATTGCTGGATGGTGT 1327
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 5130 TATGCAGCTTTGCATGCTGCGACAGTTTCAATCCACCCGCTTGTAATTGCCGGATGGTGT 5189
Query 1328 GGTTTAACAACAACAGCATTTAATATGCTTCCGGTGGGATGTTTGGATGGAGGAAGAGCT 1387
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 5190 GGTTTAACAACAACAGCATTTAATATGCTTCCAGTGGGATGTTTGGATGGAGGAAGAGCT 5249
Query 1388 GTACAGGGCGCATTCGGGAAAAATGCATTGGTTACATTTGGTTTGACAACCTATGTAATG 1447
|||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 5250 GTACAGGGCGCATTTGGGAAAAATGCACTGGTTACATTTGGTTTGTCAACCTATGTAATG 5309
Query 1448 CTTGGACTCAGAGTGCTTGGCGGCCCTTTGGCACTTCCTTGGGGACTCTATC-TGCTAAT 1506
||||||||||||||||| || ||||||||||||||||||||||||||||| | | |||||
Sbjct 5310 CTTGGACTCAGAGTGCTCGGTGGCCCTTTGGCACTTCCTTGGGGACTCTA-CGTACTAAT 5368
Query 1507 CTGCCAGAGGACACCTGAAAAACCGTGTCTAAACGACGTGACCGAGGTTGGAACATGGAG 1566
||||| || ||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 5369 CTGCCGGA--ACACCTGAAAAACTGTGTCTAAACGACGTGACCGAGGTTGGAACTTGGAG 5426
Query 1567 GAAAGCCCTTGTCGGGACTGCAATAATCCTGGTCATTTTGACGCTCCTGCCTGTATGGGA 1626
||| |||||||| |||| |||| ||||||| || ||||||| |||||||||||||||||
Sbjct 5427 GAAGGCCCTTGTAGGGATTGCACTAATCCTAGTGGTTTTGACACTCCTGCCTGTATGGGA 5486
Query 1627 CGAACTCGCAGAAGAGGTAGGCATAGGGCTTGTAACCACATTTTGATGTTGTCTTC-TGT 1685
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 5487 CGAACTCGCAGAAG---TAGGCATAGGGCTTGTAACCACATTTTGATGTTATCTTCCT-T 5542
Query 1686 CTTTGAGCAGATGTTGTAGTTAGGGCCAATTCGCAGCAAAttttttttttttGGCAATAT 1745
|||||||||||||||||||||||||||||| || | |||||||||| |||| ||||||||
Sbjct 5543 CTTTGAGCAGATGTTGTAGTTAGGGCCAATCCGAAACAAATTTTTTGTTTT-GGCAATAT 5601
Query 1746 TTAGATTGCTAGATATAATGAGCCATGTCTGTACACT 1782
||||||||| |||||||||||||||||| |||||||
Sbjct 5602 TTAGATTGCCAGATATAATGAGCCATGTAGGTACACT 5638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88152157020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5