BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493601
Length=1993
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35360.3 | Symbols: CAC2 | acetyl Co-enzyme a carboxylase bi... 2658 0.0
> AT5G35360.3 | Symbols: CAC2 | acetyl Co-enzyme a carboxylase
biotin carboxylase subunit | chr5:13584106-13588330 FORWARD
LENGTH=2029
Length=2029
Score = 2658 bits (1439), Expect = 0.0
Identities = 1632/1722 (95%), Gaps = 25/1722 (1%)
Strand=Plus/Plus
Query 1 GGAGGATTCAATATCTCACAGTTCCACTCTCAACATTTCAAtctctctctctctctcAAC 60
|||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||
Sbjct 53 GGAGGATTCAATATCTCAGAGTTTCACTCTCAACATTTCATTCTCTCTCTCTCTCTCAAC 112
Query 61 AGTTAGATCTGTTTCGATACTCACGAGGTTTCCTCTCACTTCC-TTCCATTGTTAAACCA 119
| ||||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||||
Sbjct 113 AATTAGATCTGTTTCGATAATCACGAGGTTTCC-CTCACTTCCTTTCCATTGCTAAACCA 171
Query 120 GGATTTGCTTCCTCCTGCATTTGGAAATGGACGCTTCTATGATTACCAATTCCAAATCCA 179
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 GGATTTG---CCTCCTGCATTTGGAAATGGACGCTTCTATGATTACCAATTCCAAATCCA 228
Query 180 TTGCTTCTCCACCCGTGAAGTCTTTAGTCTT-GGG--G--AAGA-CAGGAGGAGTTATTA 233
|| ||||||||||| ||||||| ||| ||| | | || |||||||||||| |
Sbjct 229 TTACTTCTCCACCC------TCTTTAGCCTTAGGGAAGTCAGGAGGAGGAGGAGTTATCA 282
Query 234 GAAGTTCACTATGTAACTTGATGATGCCAAGTAAGGTTAACTTTCCTAGACAAAGAACTC 293
||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||
Sbjct 283 GAAGTTCACTATGTAACTTAATGATGCCAAGCAAAGTTAACTTCCCTAGACAAAGAACTC 342
Query 294 AAACTTTAAAGGTTAGCCAGAAGAAGGC-CAAGAGAGCTACTAGTGGTGGTGCTCTTGGT 352
||||| ||||||||||||||||||| | ||||||||||||||||||| | | |||||||
Sbjct 343 AAACTCTAAAGGTTAGCCAGAAGAA-ACTCAAGAGAGCTACTAGTGGT-G-G-TCTTGGT 398
Query 353 GCTACATGCA---GTGGTGATAAGATTCTTGTGGCGAATCGAGGTGAAATCGCAGTTCGT 409
| |||||||| |||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 399 GTTACATGCAGTGGTGGTGATAAGATTCTCGTAGCGAATCGAGGTGAAATTGCAGTTCGT 458
Query 410 GTTATCCGAACTGCTCACGAAATGGGGATTCCTTGTGTTGCTGTCTATTCAACTATTGAT 469
|||||| |||||||||| |||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 459 GTTATCAGAACTGCTCATGAAATGGGGATTCCTTGTGTTGCTGTGTATTCTACTATAGAT 518
Query 470 AAGGATGCCCTCCATGTCAAATTGGCTGATGAAGCTGTTTGCATTGGTGAAGCTCCTAGC 529
|| ||||| || ||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 519 AAAGATGCTCTTCATGTTAAATTAGCTGATGAAGCTGTTTGTATTGGTGAAGCTCCTAGT 578
Query 530 AACCAGTCGTACTTGGTAATTCCAAATGTTCTGTCTGCTGCTATCAGTCGTGGATGTACA 589
||||||||||| ||||| ||||| |||||||||||||| ||||| || ||||||||||||
Sbjct 579 AACCAGTCGTATTTGGTGATTCCGAATGTTCTGTCTGCGGCTATTAGCCGTGGATGTACA 638
Query 590 ATGCTTCATCCTGGATACGGTTTCCTTTCGGAGAATGCTCTCTTTGTTGAAATGTGCAGA 649
||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 639 ATGCTTCATCCTGGATATGGTTTTCTTTCGGAGAACGCTCTCTTTGTTGAAATGTGTAGA 698
Query 650 GACCATGGGATCAATTTTATTGGACCTAATCCTGATAGCATCCGTGTTATGGGAGACAAA 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 GACCATGGGATCAATTTTATTGGACCTAATCCTGATAGCATCCGTGTTATGGGAGACAAA 758
Query 710 GCAACTGCAAGAGAGACAATGAAAAATGCTGGGGTTCCCACTGTACCAGGGAGTGATGGG 769
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 759 GCGACTGCAAGAGAGACAATGAAAAATGCAGGGGTTCCCACTGTACCAGGGAGTGATGGG 818
Query 770 CTATTGCAGAGCACAGAAGAAGCAGTCAGGGTCGCCAATGAGATTGGTTTCCCTGTTATG 829
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 819 CTATTGCAGAGTACAGAAGAAGCTGTCAGGGTCGCCAATGAGATTGGTTTCCCTGTAATG 878
Query 830 ATCAAGGCAACAGCCGGTGGTGGTGGACGTGGAATGCGTCTTGCTAAGGAACCAGGAGAG 889
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 879 ATCAAGGCAACAGCTGGTGGTGGTGGACGTGGAATGCGTCTTGCTAAGGAACCGGGAGAG 938
Query 890 TTTGTAAAACTGTTACAGCAAGCTAAGAGTGAGGCTGCTGCTGCTTTTGGAAATGATGGA 949
|||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 939 TTTGTAAAACTGTTGCAGCAAGCTAAGAGCGAGGCTGCTGCTGCTTTTGGGAATGATGGA 998
Query 950 TGTTATCTGGAGAAGTTCGTACAAAACCCTAGACATATTGAGTTCCAGGTGCTGGCAGAT 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 TGTTATCTGGAGAAGTTCGTACAAAACCCTAGACATATTGAGTTCCAGGTGCTGGCAGAT 1058
Query 1010 AAATTTGGAAATGTTGTTCACTTTGGTGAGCGTGACTGCAGCATTCAGAGGCGTAACCAA 1069
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1059 AAATTTGGAAATGTTGTTCACTTTGGTGAGCGTGACTGCAGCATCCAGAGGCGTAACCAA 1118
Query 1070 AAGCTTCTGGAAGAAGCACCTTCTCCAGCATTGACCGCTGAATTGCGAAAAGCCATGGGT 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 AAGCTTCTGGAAGAAGCACCTTCTCCAGCATTGACCGCTGAATTGCGAAAAGCCATGGGT 1178
Query 1130 GATGCAGCAGTCGCAGCAGCAGCATCCATTGGGTACATTGGTGTTGGTACTGTGGAATTT 1189
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1179 GATGCAGCAGTCGCAGCAGCAGCATCCATTGGGTACATTGGTGTTGGTACTGTGGAGTTT 1238
Query 1190 CTTTTAGATGAGAGAGGTTCCTTCTACTTCATGGAAATGAACACTAGGATCCAGGTGGAG 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 CTTTTAGATGAGAGAGGTTCCTTCTACTTCATGGAAATGAACACTAGGATCCAGGTGGAG 1298
Query 1250 CATCCTGTGACAGAGATGATTTACTCTGTTGATTTGATAGAGGAGCAGATTCGTGTTGCA 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 CATCCTGTGACAGAGATGATTTACTCTGTTGATTTGATAGAGGAGCAGATTCGTGTTGCA 1358
Query 1310 ATGGGAGAGAAACTTCGTTACAAACAGGAAGATATCGTGCTCAGAGGGCACTCAATTGAA 1369
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1359 ATGGGAGAGAAACTTCGTTACAAACAGGAAGATATTGTGCTCAGAGGGCACTCAATTGAA 1418
Query 1370 TGTCGTATCAACGCAGAAGATCCATTTAAAGGATTCAGACCTGGACCTGGGAGAATAACA 1429
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1419 TGTCGTATCAATGCAGAAGATCCATTTAAAGGATTCAGACCTGGACCTGGCAGAATAACA 1478
Query 1430 TCATACTTGCCATCTGGAGGTCCTTTCGTTAGAATGGACAGCCATGTTTATTCCGACTAT 1489
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1479 TCATACCTGCCATCTGGAGGTCCTTTCGTTAGAATGGACAGCCATGTCTATTCCGACTAT 1538
Query 1490 GTTGTGCCTCCAAGCTATGATTCTCTTCTTGGGAAGCTTATTGTGTGGGCTCCAACGAGG 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 GTTGTGCCTCCAAGCTATGATTCTCTTCTTGGGAAGCTTATTGTGTGGGCTCCAACGAGG 1598
Query 1550 GAAAAAGCAATTGAAAGGATGAAGCGTGCGCTTAATGACACTATAATTACAGGGGTTCCA 1609
||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1599 GAAAAAGCAATTGAACGGATGAAGCGGGCGCTTAATGACACTATCATTACAGGGGTTCCA 1658
Query 1610 ACGACTATCAATTACCATAAACTTATCCTTGATGTTGAGGATTTCAAAAATGGAAAAGTT 1669
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1659 ACGACTATCAATTACCACAAACTTATCCTTGATGTTGAGGATTTCAAAAATGGAAAAGTT 1718
Query 1670 GATACAGCTTTCATTGTCAAGCATGAAGAGGAGCTAGCTGAG 1711
|||||||||||||| |||||||||||||||||||||||||||
Sbjct 1719 GATACAGCTTTCATCGTCAAGCATGAAGAGGAGCTAGCTGAG 1760
Score = 174 bits (94), Expect = 3e-42
Identities = 104/109 (95%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1710 AGCCTCACGAAATTGTGGCAGTGAAAGATTTGACAAACGCAGCGGTTTAGAAAGATATAT 1769
||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||| ||
Sbjct 1918 AGCCTCAAGAAATTGTGGCAGTGAAAGATCTGACAAACGCAACGGTTTAGAATGATACAT 1977
Query 1770 CAGCTCTGAAAGACCACCCAATTATTGCAATCTTCGTCTCCTTTTGTGT 1818
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 CAGCTCTGAAAGACCACCCAATTATTGCAATCTTCGTCTCCTTTTGTGT 2026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98744472015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5