BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493607

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G07505.1 | Symbols:  | zinc ion binding | chr2:3125671-31261...   497    3e-140


> AT2G07505.1 | Symbols:  | zinc ion binding | chr2:3125671-3126173 
FORWARD LENGTH=432
Length=432

 Score =  497 bits (269),  Expect = 3e-140
 Identities = 373/421 (89%), Gaps = 15/421 (4%)
 Strand=Plus/Plus

Query  9    GAGAGGGATTCCAAATCGATGTAGATGTGGAGAGGGTGTAGTTTTGAGGACATCAAAGAC  68
            |||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||| ||
Sbjct  15   GAGAGGGATTCCAAGTCGATGTAGATGTGGAGAGGATGTGGTTTTGAGGACATCAAAAAC  74

Query  69   TATAAAAAATCCAGGGAGACTCTTTTATGCTTGTCGATATGGAGAGGAGAATAGTCGTGG  128
            | | ||||||||| |||||||||||||||||||||||| ||||||||||||| || ||||
Sbjct  75   TGTGAAAAATCCAAGGAGACTCTTTTATGCTTGTCGATGTGGAGAGGAGAATGGTAGTGG  134

Query  129  TCACTTGTTTAGGTGGACTGATGAAACAATGGTTGAAGAGATGGAAGACATAATTCCGAA  188
            |||||||||||||| ||| ||||||  |||||| |||||||||||||||||| |||| ||
Sbjct  135  TCACTTGTTTAGGTTGACAGATGAAGTAATGGTGGAAGAGATGGAAGACATACTTCCAAA  194

Query  189  GATTGATGAACTTGAAAGAGCTTCATTGACATTAC-AAAAGGGTTTACAAGC--------  239
            |||||||||||||||| | ||||||||||| |||| ||||||| ||||||||        
Sbjct  195  GATTGATGAACTTGAAGGGGCTTCATTGACCTTACAAAAAGGG-TTACAAGCTTTAGAAT  253

Query  240  -TGAGATGGAAACTCTTGCAATGGAGACTCGTACATGTGAAGCTGTTGTATGCGGTT-TA  297
             ||||||||||||||| ||||||||||||||||||||||||||||| || ||||| | | 
Sbjct  254  TTGAGATGGAAACTCTGGCAATGGAGACTCGTACATGTGAAGCTGTGGTTTGCGGCTAT-  312

Query  298  GAGAAGGAGCTTCGT-GGTTTAGAGAAGGAGATTCAAGGATGCAAGATAGAATTGCGTGG  356
            ||||||||||| | | ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct  313  GAGAAGGAGCTGC-TAGGTTTAGAGAAGGAGATTCAAGGTTGCAAGATTGAATTGCGTGG  371

Query  357  TTTGAAGAACATTCTTGTGTGTATAGTGTTGATGGTTCTTGTTTATGTGTTTGTGTTGTA  416
             |||||||| ||||||||||||| ||||||||||  |||||| |||||||||||||||||
Sbjct  372  GTTGAAGAAGATTCTTGTGTGTAAAGTGTTGATGACTCTTGTCTATGTGTTTGTGTTGTA  431

Query  417  G  417
            |
Sbjct  432  G  432



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19755225357


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5