BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493610
Length=2745
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35430.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3832 0.0
> AT5G35430.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:13661923-13666015 FORWARD LENGTH=2795
Length=2795
Score = 3832 bits (2075), Expect = 0.0
Identities = 2566/2795 (92%), Gaps = 65/2795 (2%)
Strand=Plus/Plus
Query 1 GCGCGTGGATATTCTCTGAAAAGTGTAtc-tc--ctctctcgcctctctctAAAATTCAC 57
||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||| ||
Sbjct 1 GCGCGTGGATATTCTCTGAAAAGCGTATCTTCTTCTCTCTCGCCTCTCTCTGAAATTAAC 60
Query 58 TTTGCTAGGGTTTTCGA-TTT-TGTG----T--A-T-TT-------CA---CAATTCA-C 96
|| ||||||||||| || ||| |||| | | | || || ||||||| |
Sbjct 61 TTCGCTAGGGTTTT-GATTTTGTGTGTATTTCAATTCTTGCAAAAACATTCCAATTCAGC 119
Query 97 AAAACCCAAAAATCTGGGT-TA-AACAATTTGGTTATGGATTCTCGAGATTCGTTATCAT 154
||||||| ||||||||||| | ||||||| |||||||||||||||||||||||||||||
Sbjct 120 AAAACCCCAAAATCTGGGTAAACAACAATTCGGTTATGGATTCTCGAGATTCGTTATCAT 179
Query 155 CCGACGCCGCTAGAGATTCGTCGTCACTCTCCGAAGACGCAGCCGTTCTCTCTGTAACCT 214
||||||||| ||||||| |||||||||||||||| |||||||| ||||||||||||||||
Sbjct 180 CCGACGCCGTTAGAGATGCGTCGTCACTCTCCGACGACGCAGCTGTTCTCTCTGTAACCT 239
Query 215 CTGCACTCGCTAAAACCGCTCTTTCCTATTTCCAATCTGGAAAATTCGAAGAGTGTTTCG 274
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 240 CTACACTCGCTAAAACCGCTCTTTCCTATTTCCAATCTGGAAAATTCGAAGAGTGTATCG 299
Query 275 ACATTCTGATTCAGCTTGATCAAAAGAAACATAACGATCCCAAGGTTCTACACAATATGG 334
|| || |||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 300 ACGTTTTGATTCAGCTTGATCAGATGAAACATAACGATCCCAAGGTTCTACACAATATGG 359
Query 335 CAATTGCTGAGTATTTCAAGGATGGTTGCTCGAATTCCGAGAAACTGGTGCAAGGGCTTA 394
||||||| ||||| |||||||||||||||||||||||||||||| ||||| ||| ||| |
Sbjct 360 CAATTGCAGAGTACTTCAAGGATGGTTGCTCGAATTCCGAGAAATTGGTGGAAGTGCTAA 419
Query 395 ACCGTGTCAAGAAACAGAGTGAAGAACTTGCTTCTGCAGCAAGAGACCAATTGGAAGCTG 454
| ||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||
Sbjct 420 AACGTGTCAAGAAACAGAGTGAACAACTTTCTTCTGCAGCAAAAGACCAAGTGGAAGCTG 479
Query 455 CAAACCCTGGAACTAACG-CATCTGTGTCAAAGGATCATTTTGATAGTACAGTAACAACT 513
|||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 480 CAAACCCTGGAACTAACGTC-TCTGTGTCAAAGGATCATTTTGATAGGACAGTAACAACT 538
Query 514 CTCAACATTGCAGTTACCTGGTTTCATCTGCATGACTATTCAAAATCTTTTTCCATTCTA 573
||||||||||| |||||||||||||||||| || ||||||||||||| ||||||||||||
Sbjct 539 CTCAACATTGCGGTTACCTGGTTTCATCTGTATCACTATTCAAAATCCTTTTCCATTCTA 598
Query 574 GAACCCTTGTTTCTAAATATTCAGCGGCTAGACGAGACAATCGCACTTCAAATCTGCTTC 633
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GAACCTTTGTTTCAAAATATTCAGCGGCTAGACGAGACAATCGCACTTCAAATCTGCTTC 658
Query 634 TTGTTGCTGGATATTGCACTGGCTTGTCGTGATGCTGTAAAATTTTTGGCTGTGTTTGAC 693
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 659 TTGTTGCTGGATATTTCACTGGCTTGTCGTGATGCTGTAAATTTTTTGGCTGTGTTTGAC 718
Query 694 TATATGGAGAAAGCTTTTGGTGTTGGTTTTGGAAGTCACGAAGAAAATGGAAGCACAATG 753
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 719 TATATGGACAAAGCTTTTGGTGTTGGTTTTGGAAGTCATGAAGAAAATGGAAGCACAATG 778
Query 754 CAACTTTCTTCAAATCAGGTTTCCAAGACATCTTCTCTCCTGAGCAGCTCGGTGGCGTCA 813
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 779 CAACTTTCTTCAAATCAGGTATCCAGGACATCTTCTCTCCTGAGCAGCTCGGTGGCGTCA 838
Query 814 GATACTTTGAAG-TCCGAGTTAACAGCTGCTGAAAGTAGTCTGTGTGAGGAAACTCTAGA 872
||||||||| || || || |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 839 GATACTTTG-AGATCTGATTTAACAGCCGCTGAAAGTAGTCTGTGCGAGGAAACTCTAGA 897
Query 873 CTATGACAATGTGCTAGCAGAATTTGAGGCAGAGAAACGAATGAAGCCAGTTGGCCATAT 932
|||||| ||||| ||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 898 CTATGAAAATGTTCTAGCAGAAATTGAGGCAGAGAAACGAATGAAGCTAGTTGGCCATAT 957
Query 933 TCCGGCAAACAATCTTCTCAAGACATTAAGCGAAAGGACGTTCTCGAATGCTGATCTGAA 992
|||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||
Sbjct 958 TCCGGCAAACAACCTTCTCAAGACATTAAGCGAGAGGTCGTTCTCGACTGCTGATCTGAA 1017
Query 993 GCTTGAGTTGCAGCTTTACAAGGTCAGGTTTTTGCTTCTTACCAGAAACTTGAAAATGGC 1052
||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||
Sbjct 1018 GCTTGAGTTGCAGCTTTACAAGGTCCGGTTTTTGCTTCTGACCAGAAACTTGAAGCTGGC 1077
Query 1053 GAAGCGTGAAGTCAAACATGCAATGAACATTGCTCAAAAAAGGGACTCTTCTATGGCTCT 1112
|||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1078 GAAGCGCGAAGTCAAGCATGCGATGAACATAGCTCAAAAAAGGGACTCTTCTATGGCTCT 1137
Query 1113 CCTCTTGAAATCCCAGCTTGAGTATGCTCATGGGAATCATCCAAAGGCTATAAAGCTTTT 1172
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1138 CCTCTTGAAATCCCAGCTTGAGTATGCTCATGGGAATCATCCAAAGGCTATGAAGCTTTT 1197
Query 1173 GGTTG-TCTCCGGTATTCATAAAGAAGCAGGGACTTCAGGAATCTTCAAAAACAACCTTG 1231
| ||| |||| ||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 1198 G-TTGGTCTCTGGTATTCATAAAGAAGCAGGGACTTCAGGGATCTTTAACAACAACCTTG 1256
Query 1232 GTTGCATATACTATCAGCTTGGAAATTATCAAGCTTCCTCTGTGTTATTCTTAAAAGCTC 1291
||||||||| ||||||||||||| |||||| |||||||||||| |||||||||| || |
Sbjct 1257 GTTGCATATTCTATCAGCTTGGATGTTATCAGGCTTCCTCTGTGCTATTCTTAAAGGCCC 1316
Query 1292 TAAGGAGCTGTTCATCACTTAGAAGAAACGAGAAACCAGTGAAGCCGTTTTCTCTCTCAC 1351
|||||||||||||||||||||||| | | |||||||| |||| | |||||||||||||
Sbjct 1317 TAAGGAGCTGTTCATCACTTAGAA-ATG-G-GAAACCAGCGAAGACATTTTCTCTCTCAC 1373
Query 1352 AGGATAAGTCTTTGTTGATCATATACAACTGCGGGTTGGTTTATTTGGCTT-TGGGCAAG 1410
|| |||||||| |||| |||| ||||||||| || ||| |||||||||| | ||| |||
Sbjct 1374 AGAATAAGTCTATGTTAATCACATACAACTGTGGTTTGCTTTATTTGGCATCTGGA-AAG 1432
Query 1411 CCTCTACTTGCTGCTCAATGTTTCCAGAAGGCAAGCG-TAGTTTTCTGGAGACAACCCCT 1469
|||||||||||||||||||||||||||||||||||| | |||||| | ||||||||||
Sbjct 1433 CCTCTACTTGCTGCTCAATGTTTCCAGAAGGCAAGCCAT-GTTTTCCGCCGACAACCCCT 1491
Query 1470 CATTTGGCTCCGTTTAGCTGAATGCTGTATGATGGCTTTACGAAAGGGTCTTTTGGAAGA 1529
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1492 CATTTGGCTCCGTTTAGCTGAATGCTGTATGATGGCCTTACAAAAGGGTCTTTTGGAAGG 1551
Query 1530 GCGAACCACTTCTTTGGATAGATCAGAAATCAGAGTC-AGTGTAGTTGGGAAAGGGAATT 1588
| ||| || ||||||||||||||| |||||||||||| | |||| ||||||||||||||
Sbjct 1552 GGGAAACAGTTCTTTGGATAGATCGGAAATCAGAGTCCA-TGTAATTGGGAAAGGGAATC 1610
Query 1589 GGAGACAACTTATGATTGAAGAAAATGGATATGTTGAACTTGCTGGCAA-TA-CTCAATT 1646
|||||||||| |||||||||||||||||||| |||||||||||||| || || | |||||
Sbjct 1611 GGAGACAACTAATGATTGAAGAAAATGGATACGTTGAACTTGCTGG-AAGTAAC-CAATT 1668
Query 1647 GTCAAAGCTTTCATTACCACTAGCTCGGGTCTGTCTCTCAAATGGTATATATCTGCTCAA 1706
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1669 GTCAAAGCTTTCATTACCACTAGCACGGGTCTGTCTCTCAAATGGTATATATCTGCTCAA 1728
Query 1707 TGAGTCTCTCTCGAATGATTCTAAATCAGATCTTGGATCAACATTCTCTGTGGGGATGAA 1766
||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct 1729 TGAGTCTCTCTCGAATGATTCTAAATCAGATCTTGGATCAATATTATCCGTGGGGATGAA 1788
Query 1767 TGAGACCAAAGAAGCATCATCCTCTGATCATGAGGAAGCTAACACGAACTCAGACTTGAA 1826
|||||||||||||| ||||||||||||||||||||||| |||||||||| |||||| |||
Sbjct 1789 TGAGACCAAAGAAGGATCATCCTCTGATCATGAGGAAGGTAACACGAACACAGACTCGAA 1848
Query 1827 AGAGGCAAAAGGAGGAATGAGCCAGGACATAATTCAAAACTCACTCTCGGCTTTCAAGGA 1886
|||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||
Sbjct 1849 AGAGGCAAAAGGAGGAATGAGCCAAGAAATAATTCAAAACTCACTCTCTGCTTTTGAGGA 1908
Query 1887 TATGT-GTAGTAAAGAAAAGCAGTTGATGCA-ACAGGCTCTTTTTGCCAATATGGCATAT 1944
||| | ||| || |||||||||||||||| | ||||||||| |||||||||||||| |||
Sbjct 1909 TAT-TCGTAATAGAGAAAAGCAGTTGATG-AGACAGGCTCTCTTTGCCAATATGGCTTAT 1966
Query 1945 GTAGAATTGGAGTTGGAGAATCCTGTCAAAGCCTTGTCAGCTGCTACTTCACTCTTGCAA 2004
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1967 GTAGAATTGGAGTTGGCGAATCCTATCAAAGCCTTGTCAGCTGCTACTTCACTCTTGCAA 2026
Query 2005 CTTCCAGATTGTTCAAAGATTTATGTTTTCCTAGGCCATATCTATGCAGCTGAGGCCCTC 2064
||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2027 CTTGCAGATTGTTCGAAGATTTATGTTTTCCTAGGCCATATCTATGCAGCGGAGGCCCTC 2086
Query 2065 TGCTTGCTCAATCGACCGATTGAAGCTGGTGCACATTTATCTGCCTATTTAGTCGGACAG 2124
||||||||||||||||| ||||||||||||||||||||||| |||||| || ||||||||
Sbjct 2087 TGCTTGCTCAATCGACCCATTGAAGCTGGTGCACATTTATCCGCCTATCTACTCGGACAG 2146
Query 2125 GATGATTTCAGACTGCCATACGCGCAAGAAGACTTTGACCAGTGGTGGAAGCACACAAGC 2184
|||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2147 GATGATTTTAAACTGCCATATGCGCAAGAAGACTTTGACCAGTGGTGGAAGCACACAAGT 2206
Query 2185 TCTGATTGTGAAGAGACATTGGATCCGTCCACAGGAAATGCCCGGGAATCTGTTTTCCTT 2244
|||||||||||||||||||||||||| ||||| |||||| ||||||| || |||||||||
Sbjct 2207 TCTGATTGTGAAGAGACATTGGATCCCTCCACGGGAAATACCCGGGATTCAGTTTTCCTT 2266
Query 2245 AAGCCAGAAGAAGCTCGTGGAGCACTTTTCGCAGACCTTGCTGCGCTGCTTGCCACACAA 2304
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2267 AAGCCAGAAGAAGCTCGTGGAGCACTTTTCGCAGACCTTGCCGCGCTGCTTGCCACACAA 2326
Query 2305 GGACATCACGACCAGGCAAAACCTTTGATTACACACGCATTAACTCTCTTACCGAACAAT 2364
|||||||||||||| |||||| ||||||| || ||||| |||||||||||||||||||||
Sbjct 2327 GGACATCACGACCAAGCAAAATCTTTGATAACGCACGCGTTAACTCTCTTACCGAACAAT 2386
Query 2365 GTACAAGCTACAGTTACAGCAGTCTACATCGATCTCATGTTGGGTAGGTCGCAAGATGCC 2424
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 2387 GTACAAGCTACAGTTACAGCAGTCTACATTGATCTCATGTTGGGTAGGTCACAAGACGCC 2446
Query 2425 CTTGCTCGGTTAAAACAGTGTACCCGTGTGAGCTTTGTTCCAGGCAGACTGGAAGTGAGA 2484
||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||
Sbjct 2447 CTTGCTCGGTTAAAACAGTGTACCCATGTGAGCTTTGTTCCAGGGAGATTGGAAGTGAGA 2506
Query 2485 GCCTCATAGAAGATTTGTACTCTAA-TCGGTATGGTTTGttttttttttAAATTCAAGCT 2543
||||||||||||||||||||||||| | ||||||||||||| |||||| |||||||||||
Sbjct 2507 GCCTCATAGAAGATTTGTACTCTAAATTGGTATGGTTTGTTCTTTTTTGAAATTCAAGCT 2566
Query 2544 TTAGAAATTAGTTGGTTCTATAAATATCAGAGAATAAGCTTTTGTACAAGtttttttttt 2603
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 2567 TTAGAAATTAGTTGGTTCGATAAATATCAGAGAATAAACTTTTGTACAAGTTTTTTTTTG 2626
Query 2604 tttttAATTTCTTTTATTAGTACTGTGAGATGATATTTGCATTCTTGACTTAGATTT--- 2660
||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||
Sbjct 2627 TTTTTAATTTCTTGTATTAGTACTGTGAGATGATATTTGCACTCGTGACTTAGATTTGGG 2686
Query 2661 T-T--AG---T----CGATTTCTTGTTCAGGAACAAGATAAGATTGGTAGAACAAAACAA 2710
| | || | ||||||||||||||||||||| ||||||||| ||||||||| ||
Sbjct 2687 TCTTGAGGGATTAGTCGATTTCTTGTTCAGGAACAACATAAGATTGTTAGAACAAA-CAC 2745
Query 2711 AAGTTTTTGTACTTTGTTTTAAATCTTGTTTCAGA 2745
|||||||||||||| ||||||||||||||| |||
Sbjct 2746 CAGTTTTTGTACTTTTTTTTAAATCTTGTTTAAGA 2780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136353751074
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5