BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493614
Length=572
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14870.1 | Symbols: PCR2 | PLANT CADMIUM RESISTANCE 2 | chr1... 660 0.0
AT5G35525.1 | Symbols: | PLAC8 family protein | chr5:13707084-... 643 0.0
AT1G14880.1 | Symbols: PCR1 | PLANT CADMIUM RESISTANCE 1 | chr1... 521 2e-147
> AT1G14870.1 | Symbols: PCR2 | PLANT CADMIUM RESISTANCE 2 | chr1:5128375-5129523
REVERSE LENGTH=740
Length=740
Score = 660 bits (357), Expect = 0.0
Identities = 445/487 (91%), Gaps = 8/487 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGCTCAACACCTTCATGCCAAGCCTCATGCGGAAGGAGAATGGTCCACAGGCTTC 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 66 ATGGAAGCTCAACACCTTCATGCCAAGCCTCATGCTGAAGGAGAATGGTCCACAGGCTTC 125
Query 61 TGTGATTGCTTCTCTGACTGCAAAAACTGTTGTATCACATGTTTG-TGTCCATGTATCAC 119
||||||||||| |||||||||||||| ||||||||||||| | || ||||||||||||||
Sbjct 126 TGTGATTGCTTTTCTGACTGCAAAAATTGTTGTATCACAT-TCTGGTGTCCATGTATCAC 184
Query 120 ATTTGGCCAAGTCGCCGAGATTGTAGATCGAGGAACCACCTCATGTGGTGCTGCTGGAGC 179
||||||||||||||||||||||||||||||||| |||| || |||||| ||||||||||
Sbjct 185 CTTTGGCCAAGTCGCCGAGATTGTAGATCGAGGATCCACATCGTGTGGTACTGCTGGAGC 244
Query 180 ACTATACACGTTGATAGCCGTAATAACTGGTTGTGCATGTTTCTACTCGTGTTTCTATCG 239
|||||| |||||||||||||| ||||||||||||||||| | ||||| |||||||||||
Sbjct 245 TCTATACGCGTTGATAGCCGTAGTAACTGGTTGTGCATGTATATACTCATGTTTCTATCG 304
Query 240 TGGAAAGATGAGAGCTCAGTACAATATTAGAGGTGATGATTGTACTGATTGCCTTAAACA 299
|||||||||||||||||| || ||||||| ||| ||||||||||||||||||||||||||
Sbjct 305 TGGAAAGATGAGAGCTCAATATAATATTAAAGGAGATGATTGTACTGATTGCCTTAAACA 364
Query 300 TTCCTTCTGTGAGCTTTGTTCTTTGACCCAAGAATACCGTGAACTCAAGCATCGCGGTTT 359
|| || ||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 365 TTTCTGCTGTGAGCTTTGTTCTTTGACCCAACAATACCGTGAACTCAAGCACCGCGGTTA 424
Query 360 CGATATGAATCTTGGATGGGCGGGGAACGTGGAAAGGCAAGTGCAACAGAACCACGGAGG 419
|||||||| |||||||||||||||||||||||| || | |||||||| || |||||
Sbjct 425 CGATATGAGTCTTGGATGGGCGGGGAACGTGGAGAG--A----CAACAGAATCAAGGAGG 478
Query 420 TGTGGCGATGGGTGCTCCGGCCTTCCAAGGCGGCATGACCCGCTAAGATTTGTTTCTTAA 479
|||||| ||||||||||||| ||||||||||||||||||||||||||| || |||||| |
Sbjct 479 TGTGGCCATGGGTGCTCCGGTCTTCCAAGGCGGCATGACCCGCTAAGAATTATTTCTTTA 538
Query 480 TGTCATT 486
||| |||
Sbjct 539 TGTAATT 545
> AT5G35525.1 | Symbols: | PLAC8 family protein | chr5:13707084-13707955
FORWARD LENGTH=596
Length=596
Score = 643 bits (348), Expect = 0.0
Identities = 441/486 (91%), Gaps = 6/486 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGCTCAACACCTTCATGCCAAGCCTCATGCGGAAGGAGAATGGTCCACAGGCTTC 60
|||| | ||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCATCTCAACACCTTCAAGCCAACCCTCATGCTGAAGGAGAATGGTCCACAGGCTTC 60
Query 61 TGTGATTGCTTCTCTGACTGCAAAAACTGTTGTATCACATGTTTGTGTCCATGTATCACA 120
||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||| |||
Sbjct 61 TGTGATTGCTTCTCTGATTGCCAAAACTGTTGTATCACATGGTTGTGTCCATGTATTACA 120
Query 121 TTTGGCCAAGTCGCCGAGATTGTAGATCGAGGAACCACCTCATGTGGTGCTGCTGGAGCA 180
||||||||||| || || |||||||| ||||||| |||||| |||||| |||||||||||
Sbjct 121 TTTGGCCAAGTTGCTGATATTGTAGACCGAGGAAACACCTCGTGTGGTACTGCTGGAGCA 180
Query 181 CTATACACGTTGATAGCCGTAATAACTGGTTGTGCATGTTTCTACTCGTGTTTCTATCGT 240
||||| |||| |||||| |||||||||||||| |||| ||||||||||| ||||||||
Sbjct 181 CTATATGTGTTGCTAGCCGCAATAACTGGTTGTGGATGTCTCTACTCGTGTATCTATCGT 240
Query 241 GGAAAGATGAGAGCTCAGTACAATATTAGAGGTGATGATTGTACTGATTGCCTTAAACAT 300
|||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 GGAAAGATCAGAGCTCAATACAATATTAGAGGTGATGGTTGTACTGATTGCCTTAAACAT 300
Query 301 TCCTTCTGTGAGCTTTGTTCTTTGACCCAAGAATACCGTGAACTCAAGCATCGCGGTTTC 360
| || ||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||
Sbjct 301 TTCTGCTGTGAGCTTTGTGCTTTGACACAAGAATACCGTGAACTCAAGCACCGCGGTTTC 360
Query 361 GATATGAATCTTGGATGGGCGGGGAACGTGGAAAGGCAAGTGCAACAGAACCACGGAGGT 420
||||||| |||||||||||||||||||||||| | ||| ||||||||||| ||||||
Sbjct 361 GATATGAGTCTTGGATGGGCGGGGAACGTGGA--G--AAG--CAACAGAACCAAGGAGGT 414
Query 421 GTGGCGATGGGTGCTCCGGCCTTCCAAGGCGGCATGACCCGCTAAGATTTGTTTCTTAAT 480
||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| ||
Sbjct 415 GTGGCGATGGGTGCTCCAGCCTTCCAAGGCGGCATGAGCCGCTAAGATTTGCTTCTTTAT 474
Query 481 GTCATT 486
|| |||
Sbjct 475 GTAATT 480
> AT1G14880.1 | Symbols: PCR1 | PLANT CADMIUM RESISTANCE 1 | chr1:5132535-5133716
REVERSE LENGTH=765
Length=765
Score = 521 bits (282), Expect = 2e-147
Identities = 416/479 (87%), Gaps = 15/479 (3%)
Strand=Plus/Plus
Query 1 ATGGAAGCTCAACACCTTCATGCCAAGCCTCATGCGGAAGGAGAATGGTCCACAGGCTTC 60
|||||||||| | | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 54 ATGGAAGCTC-A-A-CTTCATGCCAAGCCTCATGCTCAAGGAGAATGGTCCACAGGCTTC 110
Query 61 TGTGATTGCTTCTCTGACTGCAAAAACTGTTGTATCACATGTTTGT-GTCCATGTATCAC 119
||||||||||||||||||||| ||||||||||||||||| | ||| |||||||||||||
Sbjct 111 TGTGATTGCTTCTCTGACTGCCGAAACTGTTGTATCACAT-TATGTTGTCCATGTATCAC 169
Query 120 ATTTGGCCAAGTCGCCGAGATTGTAGATCGAGGAACCACCTCATGTGGTGCTGCTGGAGC 179
||||||||||||||| |||||||||||||||||| ||| || ||| |||| ||||||||
Sbjct 170 ATTTGGCCAAGTCGCTGAGATTGTAGATCGAGGATCCAAATCGTGTTGTGCGGCTGGAGC 229
Query 180 ACTATACACGTTGATAGCCGTAATAACTGGTTGTGCATGTTTCTACTCGTGTTTCTATCG 239
| |||||| |||||||| | ||||||| |||||| || | ||| ||||||||||| |
Sbjct 230 ATTATACATGTTGATAGACTTAATAACAAGTTGTGGGCGTATGTACGCGTGTTTCTATAG 289
Query 240 TGGAAAGATGAGAGCTCAGTACAATATTAGAGGTGATGATTGTACTGATTGCCTTAAACA 299
|||||||||||||||||| |||||||||| ||| |||| |||||||||||||||||||||
Sbjct 290 TGGAAAGATGAGAGCTCAATACAATATTAAAGGAGATGGTTGTACTGATTGCCTTAAACA 349
Query 300 TTCCTT-CTGTGAGCTTTGTTCTTTGACCCAAGAATACCGTGAACTCAAGCATCGCGGTT 358
|| || |||| | || ||| ||||||||||| ||||||||||||||||||| |||||||
Sbjct 350 TTT-TTGCTGTAACCTCTGTGCTTTGACCCAACAATACCGTGAACTCAAGCACCGCGGTT 408
Query 359 TCGATATGAATCTTGGATGGGCGGGGAACGTGGAAAGGCAAGTGCAACAGAACCACGGAG 418
||||||||| ||||||||||| ||||||| || | || ||||| || || || |
Sbjct 409 TCGATATGAGCCTTGGATGGGCAGGGAACGCAGAGA---AA---CAACAAAATCAAGGTG 462
Query 419 GTGTGGCGATGGGTGCTCCGGCCTTCCAAGGCGGCATGACCCGCTAAGATTTG-TTTCT 476
| ||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||
Sbjct 463 GAGTGGCGATGGGTGCTCCAGCCTTCCAAGGCGGCATGACCCGCTAAGATT-GATTTCT 520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27478078409
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5