BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493615
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35530.1 | Symbols: | Ribosomal protein S3 family protein |... 1552 0.0
AT2G31610.1 | Symbols: | Ribosomal protein S3 family protein |... 774 0.0
AT3G53870.1 | Symbols: | Ribosomal protein S3 family protein |... 708 0.0
> AT5G35530.1 | Symbols: | Ribosomal protein S3 family protein
| chr5:13710111-13712288 REVERSE LENGTH=1087
Length=1087
Score = 1552 bits (840), Expect = 0.0
Identities = 923/962 (96%), Gaps = 9/962 (1%)
Strand=Plus/Plus
Query 1 TAACCACACAATTTTATCATTTCACTCCTTAACGCACTCTCTTCACCGAATCTAGGGTTT 60
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 4 TAACCACACAATTTTATCATTTCACTCC-TAACGCACTCTCTTCTCCGAATCTAGGGTTT 62
Query 61 TTGTCTCTAGCCTCCTCAAGCTTTGCAACAACAAAAATGGCGACCCAGATCAGCAAGAAG 120
|||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 63 TTGTCTCTAGCCTCCTCAAGCTTTGC-A-AACAATCATGGCGACCCAGATCAGCAAGAAG 120
Query 121 AGAAAGTTCGTAGCCGATGGTGTGTTTTACGCTGAGCTCAATGAGGTGT-TAACCAGAGA 179
||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||
Sbjct 121 AGAAAGTTCGTAGCCGATGGTGTGTTTTACGCTGAACTCAATGAGGT-TCTAACCAGAGA 179
Query 180 GCTTGCTGAGGATGGTTACTCTGGCGTTGAGGTTCGTGTCACTCCTATGCGTACTGAGAT 239
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 180 GCTTGCTGAGGATGGTTACTCTGGTGTTGAGGTTCGCGTCACTCCTATGCGTACTGAGAT 239
Query 240 CATCATTAGAGCCACTCGTACTCAAAACGTTCTCGGTGAGAAGGGAAGGAGGATTAGGGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CATCATTAGAGCCACTCGTACTCAAAACGTTCTCGGTGAGAAGGGAAGGAGGATTAGGGA 299
Query 300 ATTGACATCTCTTGTACAAAAGAGATTCAGATTTCCTCAGGACAGTGTTGAGCTTTATGC 359
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 300 ATTGACATCTCTTGTACAAAAGAGATTCAAATTTCCTCAGGACAGTGTTGAGCTTTATGC 359
Query 360 TGAGAAGGTTGCTAACAGAGGTCTTTGTGCTATTGCTCAGGCTGAGTCTCTTCGTTACAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGAGAAGGTTGCTAACAGAGGTCTTTGTGCTATTGCTCAGGCTGAGTCTCTTCGTTACAA 419
Query 420 GCTTCTTGGTGGTCTTGCTGTTCGTAGGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGA 479
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 420 GCTTCTTGGTGGTCTTGCTGTTCGTAGGGCGTGCTATGGTGTTTTAAGGTTTGTTATGGA 479
Query 480 GAGTGGAGCTAAAGGATGCGAAGTCATTGTGAGTGGAAAACTCCGTGCTGCACGTGCTAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GAGTGGAGCTAAAGGATGCGAAGTCATTGTGAGTGGAAAACTCCGTGCTGCACGTGCTAA 539
Query 540 GTCGATGAAGTTCAAGGATGGTTACATGGTTTCCTCAGGTCAGCCAACCAAAGAATACAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 GTCGATGAAGTTCAAGGATGGTTACATGGTTTCCTCAGGTCAGCCAACCAAGGAATACAT 599
Query 600 TGATGCTGCAGTTAGGCACGTTCTTCTTAGACAGGGTGTGCTAGGACTCAAGGTGAAGAT 659
|||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 600 TGATGCTGCAGTTAGGCATGTTCTTCTTAGACAGGGTGTGCTTGGTCTCAAGGTGAAGAT 659
Query 660 CATGCTTGACTGGGACCCCAAGGGCAAACTAGGACCGATGACACCATTGCCTGATGTTGT 719
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 660 CATGCTTGACTGGGACCCCAAGGGCAAACAAGGACCGATGACACCATTGCCTGATGTTGT 719
Query 720 GATCATCCATACACCGAAAGAAGATGATGTTTACATCGCACCTGCTCAGGTTGTTGCTCC 779
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||
Sbjct 720 GATCATCCATACACCGAAAGAAGATGATGTATACATTGCACCTGCTCAGGTTGTTACTCA 779
Query 780 TA-CTGCTCTTGTACCGGAAGCCCCATTAACAACCACAGATTATCCCGCAATGCCAGTTG 838
| ||||| ||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 780 -AGCTGCTTTTGTACCGGAAGCTCCATTAACCACCACAGATTATCCAGCAATGCCAGTTG 838
Query 839 CTTAGAGAGCCTTTTCGTTTTCTGGTTTAAAACCCAATGAGGATGGTTCtttttttGGGA 898
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 839 CTTAGAGAGCCTTTTCGTTTTCTGGTTTAAAACCCAATGGGGATGGTTCTTTTTTTGGGA 898
Query 899 CAGTACTAGTTTTCTCATGTTATTTTATGATAATACTTTTTAAGTTCTTGTGGTTGAATT 958
|||||||||||||||||||||||| || | |||||||| ||||||| | |||||||||
Sbjct 899 CAGTACTAGTTTTCTCATGTTATTCTAAGTTAATACTTA--AAGTTCTGGAGGTTGAATT 956
Query 959 AC 960
||
Sbjct 957 AC 958
> AT2G31610.1 | Symbols: | Ribosomal protein S3 family protein
| chr2:13450302-13451923 FORWARD LENGTH=1089
Length=1089
Score = 774 bits (419), Expect = 0.0
Identities = 635/738 (86%), Gaps = 19/738 (3%)
Strand=Plus/Plus
Query 97 ATGGCGACCCAGATCAGCAAGAAGAGAAAGTTCGTAGCCGATGGTGTGTTTTACGCTGAG 156
|||||||| || |||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct 83 ATGGCGACTCAAATCAGCAAGAAGAGAAAGTTTGTAGCGGATGGTGTATTCTACGCTGAA 142
Query 157 CTCAATGAGGTGT-TAACCAGAGAGCTTGCTGAGGATGGTTACTCTGGCGTTGAGGTTCG 215
| |||||||| | | || |||||||| || ||||||||||||||||| ||||||||| |
Sbjct 143 TTGAATGAGGT-TCTCACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAG 201
Query 216 TGTCACTCCTATGCGTACTGAGATCATCATTAGAGCCACTCGTACTCAAAACGTTCTCGG 275
|| ||||| ||| | |||||||| ||||| ||||| ||||||||||| || ||||| ||
Sbjct 202 GGTTACTCCAATGAGGACTGAGATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTGG 261
Query 276 TGAGAAGGGAAGGAGGATTAGGGAATTGACATCTCTTGTACAAAAGAGATTC-AGATTTC 334
||||||||| ||||| ||||||||||||||||||||||| || ||||||||| || |||
Sbjct 262 TGAGAAGGGGAGGAGAATTAGGGAATTGACATCTCTTGTCCAGAAGAGATTCAAG-TTT- 319
Query 335 CTCAG--GACAGTGTTGAGCTTTATGCTGAGAAGGTT-GCTAACAGAGGTCTTTGTGCTA 391
| ||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||| |
Sbjct 320 C-CAGTTGACAGTGTTGAGCTCTATGCTGAGAAGGTTAAC-AACAGAGGTCTCTGTGCCA 377
Query 392 TTGCTCAGGCTGAGTCTCTTCGTTACAAGCTTCTTGGTGGTCTTGCTGTTCGTAGGGCTT 451
||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |
Sbjct 378 TTGCTCAGGCTGAGTCTCTACGTTACAAGCTTCTCGGTGGTCTTGCTGTTCGCAGGGCCT 437
Query 452 GCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAAGGATGCGAAGTCATTGTGA 511
| |||||||| ||||| ||||||||||||||||||||||| ||||| || ||||| ||||
Sbjct 438 GTTATGGTGTTTTGAGATTTGTTATGGAGAGTGGAGCTAAGGGATGTGAGGTCATCGTGA 497
Query 512 GTGGAAAACTCCGTGCTGCACGTGCTAAGTCGATGAAGTTCAAGGATGGTTACATGGTTT 571
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 498 GTGGAAAGCTCCGTGCTGCACGTGCTAAGTCCATGAAGTTCAAGGATGGTTACATGGTTT 557
Query 572 CCTCAGGTCAGCCAACCAAAGAATACATTGATGCTGCAGTTAGGCACGTTCTT-CTTAGA 630
| || ||||| ||||| || |||||||| ||||||||||| || || ||| || || |||
Sbjct 558 CATCTGGTCAACCAACTAAGGAATACATCGATGCTGCAGTGAGACATGTT-TTGCTCAGA 616
Query 631 CAGGGTGTGCTAGGACTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGCAAA-CT 689
||||| ||| | ||| ||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 617 CAGGGGGTGTTGGGAATCAAGGTGAAGATCATGCTTGACTGGGACCCTACGGGCAAATC- 675
Query 690 AGGACCGATGACACCATTGCCTGATGTTGTGATCATCCATACACCGAAAGAAGATGATGT 749
|||||| | ||||||||||||||||||||||||||| ||| | || ||||| |||| |||
Sbjct 676 AGGACCAAAGACACCATTGCCTGATGTTGTGATCATTCATGCTCCTAAAGATGATGTTGT 735
Query 750 TTACATC-GCACCTGCTCAGGTTGTTGCTCCTACTG-CTCTTGTACCGGAAGCCCCATTA 807
||| || ||||||||||||| || |||||| | | ||||||| | ||||| ||| |
Sbjct 736 CTAC-TCTGCACCTGCTCAGGCTGCTGCTCC-AGTTACTCTTGTGCAAGAAGCTCCACTC 793
Query 808 ACAACCACAGATTATCCC 825
|||||| |||||| |||
Sbjct 794 ACAACCGTAGATTA-CCC 810
> AT3G53870.1 | Symbols: | Ribosomal protein S3 family protein
| chr3:19951488-19952961 FORWARD LENGTH=988
Length=988
Score = 708 bits (383), Expect = 0.0
Identities = 634/753 (84%), Gaps = 26/753 (3%)
Strand=Plus/Plus
Query 92 CAAAAATGGCGACCCAGATCAGCAAGAAGAGAAAGTTCGTAGCCGATGGTGTGTTTTACG 151
|||| ||| |||| ||||||||||||||||||||||| ||||| || |||||||| ||||
Sbjct 55 CAAACATGACGACTCAGATCAGCAAGAAGAGAAAGTTTGTAGCGGACGGTGTGTTCTACG 114
Query 152 CTGAGCTCAATGAGG-TGTTAACCAGAGAGCTTGCTGAGGATGGTTACTCTGGCGTTGAG 210
|||| | ||||||| | || || |||||||| || ||||||||||||||||| ||||||
Sbjct 115 CTGAATTGAATGAGGTTCTT-ACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAG 173
Query 211 GTTCGTGTCACTCCTATGCGTACTGAGATCATCATTAGAGCCACTCGTACTCAAAACGTT 270
||| | || ||||||||| | |||||||| ||||| ||||| || |||||||| || |||
Sbjct 174 GTTAGGGTTACTCCTATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTT 233
Query 271 CTCGGTGAGAAGGGAAGGAGGATTAGGGAATTGACATCTCTTGTACAAAAGAGATTC-AG 329
|||||||||||||| ||||| |||||||||||||| || ||||| || ||||||||| ||
Sbjct 234 CTCGGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGATTCAAG 293
Query 330 ATTTCCTCAG--GACAGTGTTGAGCTTTATGCTGAGAAGGTT-GCTAACAGAGGTCTTTG 386
||| | ||| |||||||||||||||||||| ||||||||| | ||||||||||| ||
Sbjct 294 -TTT-C-CAGTTGACAGTGTTGAGCTTTATGCCGAGAAGGTTAAC-AACAGAGGTCTCTG 349
Query 387 TGCTATTGCTCAGGCTGAGTCTCTT-CGTTACAAGCTTCTTGGTGGTCTTGCTGTTCGTA 445
||| || ||||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 350 TGCCATCGCTCAGGCTGAGTCT-TTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTA 408
Query 446 GGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAAGGATGCGAAGTCA 505
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 409 GGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATGCGAGGTTA 468
Query 506 TTGTGAGTGGAAAACTCCGTGCTGC-ACGTGCTAAGTCGATGAAGTTCAAGGATGGTTAC 564
| ||||||||||| || |||||||| | | || ||||| ||||||||||| ||||| |||
Sbjct 469 TCGTGAGTGGAAAGCTTCGTGCTGCCA-GAGCCAAGTCTATGAAGTTCAAAGATGGCTAC 527
Query 565 ATGGTTTCCTCAGGTCAGCCAACCAAAGAATACATTGA-TGCTGCAGTTAGGCACGTTCT 623
||||| || || ||||| ||||| || |||||||| || | ||||||| || || ||| |
Sbjct 528 ATGGTGTCATCTGGTCAACCAACTAAGGAATACATAGACT-CTGCAGTGAGACATGTT-T 585
Query 624 T-CTTAGACAGGGTGTGCTAGGACTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGG 682
| |||||||| |||||| | ||| ||||||||||| | |||||||| |||||||| ||||
Sbjct 586 TGCTTAGACAAGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGG 645
Query 683 GCAAA-CTAGGACCGATGACACCATTGCCTGATGTTGTGATCATCCATACACCGAAAGAA 741
||| | | |||||| | ||||||||||||||||||||||||||| ||| | || ||||||
Sbjct 646 GCATATC-AGGACCAAAGACACCATTGCCTGATGTTGTGATCATTCATTCTCCTAAAGAA 704
Query 742 GATGATGTT-TAC-ATCGCACCTGCTCAGGTTGTTGCTCCTACTGCTCTTGTACCGGAAG 799
|| || | | | || |||||||||||||||| ||| || ||||||| ||| | || |
Sbjct 705 GAAGAGGCCAT-CTAT-GCACCTGCTCAGGTTGCTGCCCCGGCTGCTCTCGTAGCAGATG 762
Query 800 CCCCATTAACAACCACAGATTATCCC-GCAATG 831
| ||| | ||| || |||||| ||| || |||
Sbjct 763 CACCACTCACAGCCGTAGATTA-CCCTGCGATG 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46968927445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5