BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493616
Length=952
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35550.1 | Symbols: TT2, ATMYB123, MYB123, ATTT2 | Duplicate... 1421 0.0
> AT5G35550.1 | Symbols: TT2, ATMYB123, MYB123, ATTT2 | Duplicated
homeodomain-like superfamily protein | chr5:13726743-13727860
FORWARD LENGTH=972
Length=972
Score = 1421 bits (769), Expect = 0.0
Identities = 907/969 (94%), Gaps = 28/969 (3%)
Strand=Plus/Plus
Query 1 TTCTCAACACAACACTAAAGACAATTGTACCAACCACACAACCATaagagagagaaaa-a 59
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 TTCTCAACACAACACTAAAGACAATTGTACCAACCACACAACCACAAGAGAGAGAAAAGT 60
Query 60 gagaatgggaaagagagcaactacaagtgtgaagagagaagagttaaacagagGAGCTTG 119
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 61 GAGAATGGGAAAGAGAGCAACTACTAGTGTGAGGAGAGAAGAGTTAAACAGAGGAGCTTG 120
Query 120 GACTGATCATGAAGACAAGATCCTAAGAGATTACATCACGACTCACGGCGAAGGCAAATG 179
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 121 GACTGATCATGAAGACAAGATCCTTAGAGATTACATCACCACTCACGGCGAAGGCAAATG 180
Query 180 GAGCAATCTCCCGAACCAAGCTGGTCTCAAGAGGTGTGGCAAAAGCTGTAGACTTCGGTG 239
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGCACTCTCCCTAACCAAGCTGGTCTCAAGAGGTGTGGCAAAAGCTGTAGACTTCGGTG 240
Query 240 GAAGAACTACTTAAGACCGGGGATAAAGCGCGGTAACATCTCATCTGATGAAGAAGAACT 299
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAGAACTACCTAAGACCGGGGATAAAGCGCGGTAACATCTCATCTGATGAAGAAGAACT 300
Query 300 CATAATCCGTCTCCATAATCTTCTTGGGAACAGATGGTCGTTGATAGCTGGGAGGCTTCC 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 CATAATCCGTCTCCATAATCTTCTTGGAAACAGATGGTCGTTGATAGCTGGGAGGCTTCC 360
Query 360 AGGCCGAACAGACAATGAAATAAAGAATCATTGGAACTCAAACCTCCGCAAAAGACTTCC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGGCCGAACAGACAATGAAATAAAGAATCATTGGAACTCAAACCTCCGCAAAAGACTTCC 420
Query 420 CAAAACTCAAACCAAGCAATCAAAACGTATAAAACATTCGACAAACAACGAGAATAATGT 479
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 421 CAAAACTCAAACCAAGCAACCAAAACGTATAAAACATTCGACGAACAACGAGAATAATGT 480
Query 480 ATGTGTTATACGTACAAAGGCGATTAGGTGCTCAAAGGCTCTTCTCTTCTCGGATCTCGC 539
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 481 ATGTGTTATACGTACAAAGGCGATTAGGTGCTCAAAGACTCTTCTCTTCTCGGATCTCTC 540
Query 540 TCTTCAGAAGCAGAGTAGTACTAGTAGTATCAGTCCACTACCTCTGAAAGAACAAGAGAA 599
|||||||||| |||||||||||||| | | |||||||||||||||||||||||
Sbjct 541 TCTTCAGAAGAAGAGTAGTACTAGT-----C---C-ACTACCTCTGAAAGAACAAGAGAT 591
Query 600 GGATCAAGGTGGGTCTTCGTTGATGGGAGATCTCGACTTCGATTTCGATAGGATCCACTC 659
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 592 GGATCAAGGTGGATCTTCGTTGATGGGAGATCTCGAATTCGATTTCGATAGGATCCATTC 651
Query 660 TGAGTTTCACTTCCCGGATTTGATGGATTTTGATGGTTTGGACTGTGGAAACGTTACATC 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GGAGTTTCACTTCCCGGATTTGATGGATTTTGATGGTTTGGACTGTGGAAACGTTACATC 711
Query 720 TCTTGTTTCATCTAACGAGATTTTGGGAGATTTGGTTCCTGCTCAAGGTAATCTCGATCT 779
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 712 TCTTGTTTCATCTAACGAGATTTTGGGAGAGTTGGTTCCTGCTCAAGGTAATCTCGATCT 771
Query 780 CAATAGACCTTTCACTTCTTGTCATCATCGCGGCGACGATGAAGATTGGCTCCGAGACTT 839
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 772 CAATAGACCTTTCACTTCTTGTCATCATCGTGGCGACGATGAAGATTGGCTCCGAGACTT 831
Query 840 CACTTGTTGAGCCTAT-TA-CATATTTCT-C-T-A-TACGGA---CA--A-A---ACAAA 884
|||||||||||||||| | || | || | | | ||| | | | | |||||
Sbjct 832 CACTTGTTGAGCCTATATTGCAAAAACCTACGTTAATACATATTTCTCTATACGGACAAA 891
Query 885 AGTATA-CGTGTATTTGTCTGTACGCTTCTAATTTCTTAACTTACTAAAGAGACCAAGAA 943
|||||| | |||||||||||| |||||||||||| || |||||||||| |||||||||||
Sbjct 892 AGTATATC-TGTATTTGTCTGAACGCTTCTAATTACT-AACTTACTAAGGAGACCAAGAA 949
Query 944 AAACAAATA 952
| |||||||
Sbjct 950 ATACAAATA 958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46567054269
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5