BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493617
Length=2769
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35560.1 | Symbols: | DENN (AEX-3) domain-containing protei... 4272 0.0
> AT5G35560.1 | Symbols: | DENN (AEX-3) domain-containing protein
| chr5:13742109-13748312 REVERSE LENGTH=2923
Length=2923
Score = 4272 bits (2313), Expect = 0.0
Identities = 2636/2788 (95%), Gaps = 38/2788 (1%)
Strand=Plus/Plus
Query 1 agaagaagaaga-a-ga-tattat---gaagaagaaaaaagaaaCTGACCCTCTCTTCGT 54
|||||||||||| | | |||||| ||||||||||||||||||||||| |||||||||
Sbjct 13 AGAAGAAGAAGATATTATTATTATGAAGAAGAAGAAAAAAGAAACTGACCATCTCTTCGT 72
Query 55 CTCTTTGTCTCTCGCTCGCTCGCAGCCTTCTTATTATTTTCTCTTAACTTTTTTGAACCC 114
||||||||||||| ||||||||||||| | || |||||| ||| |||||||||||||||
Sbjct 73 CTCTTTGTCTCTCTCTCGCTCGCAGCC-T-TT-TTATTTCCTC-AAACTTTTTTGAACCC 128
Query 115 ACGAGGATCATCTTTCTCATCATCAC--CATCATCTTCCTCCTCCTCCATAATAATAAAC 172
|||||||||||||| ||||||||||| || ||||||| || |||||||||||||||| |
Sbjct 129 ACGAGGATCATCTTCCTCATCATCACATCACCATCTTCTTCGTCCTCCATAATAATAATC 188
Query 173 AAACTTCTTCT--TTT-CTCTGAAGAAGAAACTAG-GTCACCAGTTTTTTCAATTGCTTG 228
|||||||||| ||| || ||| | ||| ||| || |||||||||||||||
Sbjct 189 -AACTTCTTCTCCTTTATTC-CAAGTTCCGATTAGTTTCA-GAG-TTTTTCAATTGCTTG 244
Query 229 CTTTAAG-TT-TTTGCGTAGGTG-TGAAGTAAGTTATGGCCAAGAATGAGGAAGGAAGTA 285
| ||||| || |||||||| ||| || |||||||||||||||||||||||||||||||||
Sbjct 245 C-TTAAGTTTCTTTGCGTA-GTGTTG-AGTAAGTTATGGCCAAGAATGAGGAAGGAAGTA 301
Query 286 GTAGTCCGAGTTGGGGTGCTTCGTTTTTTATGCAGACTTCAGAAGATGTTGCAATGGCTT 345
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 302 GTAGTCCGAGCTGGGGTGCTTCGTTTTTCATGCAGACTTCAGAAGATGTTGCAATGGCTT 361
Query 346 TTGCTGCTGCGGCTTCTGCGATAAACCCGCCAAGGCCTTCTGTTGTCTTTTCGTCGAAAG 405
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 362 TTGCTGCTGCGGCTTCTGCGATAAACCCGCCAAGGCCGTCTGTTGTCTTTTCGTCGAAAG 421
Query 406 ATGAAGGTAGTGATAGCCCTCTGGAGAGGTTACAGAGGCAGGTGTCTAAAGCGGTTAAAA 465
|||||||||| ||||| ||| |||||||||||||||||||||| || ||||||||||| |
Sbjct 422 ATGAAGGTAGCGATAGTCCTTTGGAGAGGTTACAGAGGCAGGTTTCGAAAGCGGTTAAGA 481
Query 466 ACTTCTATGAAAATCCTAAGACGAAGAATGTAATGTATAATCCTGAGGTTTTGACTAGCC 525
|||||||||||| ||||||||| |||| |||| |||| ||||||||||||||||||||||
Sbjct 482 ACTTCTATGAAACTCCTAAGACCAAGAGTGTATTGTACAATCCTGAGGTTTTGACTAGCC 541
Query 526 AAAAGCGTCAATGGGCGAAATTTCAGGATCATAAACCATTGAAAGATCCATCAAGGCTTT 585
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 542 AAAAGCGTCAATGGGCGAAATTTCAGGATCATAAACCATTAAAAGATCCATCAAGGCTTT 601
Query 586 TTGAAAGCGTTGTTGTTGTTGGACTTCATCCTAATTGTGATATCCAAGCACTTGAGAGGC 645
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 602 TTGAAAGCGTTGTTGTGGTTGGACTTCATCCTAATTGTGATATTCAAGCACTTGAGAGGC 661
Query 646 AGTACATTGCACGAAAATCTGAAGGCTCTTCTGGG-AGATTGCGAAGTGCACTGGTTTCT 704
|||||||||| |||||||||||||||||||| ||| |||||||||||||| || || |||
Sbjct 662 AGTACATTGCTCGAAAATCTGAAGGCTCTTC-GGGAAGATTGCGAAGTGCTCTTGTCTCT 720
Query 705 CAAATTCATTCCCGTGTAGAACCCAGTCTCGAACCACAGGTCTTACTTGTGTACCCTCCC 764
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CAAAATCATTCCCGTGTAGAACCCAGTCTCGAACCACAGGTCTTACTTGTGTACCCTCCC 780
Query 765 GATAAGCAGCCTCCAATTAAGTACAAGGATCTTCATTCATTTTGCTTTCCTGGAGGCATT 824
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 781 GATAAGCAGCCTCCAATTAAATACAAGGATCTTCATTCATTTTGCTTTCCTGGAGGCATT 840
Query 825 GAGGTCCATGCTGTTGAGAGAACTCCTTCCATGAGCGAGTTGAGTGAGATTATTCTCAGT 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAGGTCCATGCTGTTGAGAGAACTCCTTCCATGAGCGAGTTGAGTGAGATTATTCTCAGT 900
Query 885 CAGGAACATCTGAGACCAAGTGACCTTTCATTTGTATTTAGGTTACAGGTTGCTGATAAT 944
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CAGGAACATCTTAGACCAAGTGACCTTTCATTTGTATTTAGGTTACAGGTTGCTGATAAT 960
Query 945 TCTACTTTGTATGGATGTTGCTTACTAGTGGAAGAAATAGTGAACAAACCGTCCAGATTG 1004
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TCTACTTTGTATGGATGCTGCTTACTAGTGGAAGAAATAGTGAACAAACCGTCCAGATTG 1020
Query 1005 CTTTCCACAGTTTTGGACAAACAACCTGCTTGCTCATCATTAAGTCGCTATGTTATGACA 1064
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CTTTCCACGGTTTTGGACAAACAACCTGCTTGCTCATCATTAAGTCGCTATGTTATGACA 1080
Query 1065 ACTCGCAGATGCTATTGCATCCTTACCAGACTGCCGTTTTTTGAATTGCATTTTGGTGTA 1124
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ACTCGCAGATGCTATTGCGTCCTTACCAGACTGCCGTTTTTTGAATTGCATTTTGGTGTA 1140
Query 1125 TTAAATAGCATCTTCTTGGAAGAAAGACTGGAGCATTTGATGAGTGGCATCAGTTGTGCA 1184
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1141 TTAAATAGCATCTTCTTGGAAGAAAGACTAGAGCATTTGATGAGTGGCATCAGTTGTGCG 1200
Query 1185 TCTTTAGAACCCCCAACAGATTTCAGCAATGTAGATAGCTTAAATGATTCATCACCCCAA 1244
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1201 TCTTTAGAACCCCCAACAGATTTCAGCAATGAAGATAGCTTAAATGATTCATCACCCCAA 1260
Query 1245 CAAAGAGACTCTGGGAACACAAAAGAACAAACTGTTGAAGCAGGTTC-AGAACTCCCTAA 1303
||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1261 CAAAGAGACTCTGGGGACACAAAAGAACAAACTGTTGAAGCAGGTTCCA-AACTCCCTAA 1319
Query 1304 AGCTGACGAAATTTCAGAAAATGGGACTTGTGAGGCGAATCAGAAAGTTGACGACTCTGC 1363
|||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||||||
Sbjct 1320 AGCTGACGAAATTTCAGATAATGGGACTTGTGAGGCTAATCAGAAAGCTGATGACTCTGC 1379
Query 1364 AGAGTCTAACGACTATGTCCCCAAAGCTGATGATTCCTTACCAATTATTAAGCAAGGCAG 1423
|||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AGAGTCTATTGACCGTGTCACCAAAGCTGATGATTCCTTACCAATTATTAAGCAAGGCAG 1439
Query 1424 AGAAAGTTGTTTACCAGATCCTGGCCCCCTTCTTCGGTGCCCGTATTTGGATGAGATCTC 1483
|||||||||||||||||| |||||||||||||||||||| || ||| |||||||||||||
Sbjct 1440 AGAAAGTTGTTTACCAGAGCCTGGCCCCCTTCTTCGGTGTCCTTATCTGGATGAGATCTC 1499
Query 1484 TGATTCTAGCACTAGCTTTCAGGCTGCTCCTTGTGAGAGGAGGCATTCTAGGACCAGTGC 1543
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1500 TGATTCTAGCACTAGCTTTCAGGCTGCTCCATGTGAGAGGAGGCATTCTAGGACCAGTGC 1559
Query 1544 AGATGATACTGAGACAGATGAAGCATCCTTTTCTGGTCAAGATGATACAAGCAGTAATTT 1603
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1560 AGATGATACTGAGACAGATGAAGCATCCTTTTCTGGTCAAGATGATACAAGTAGTAATTT 1619
Query 1604 TGATATTCTTGAGTGGGCAAAGTCCaaaaaaaaTGGGTCGCTGCAAATACTATGTGAGTA 1663
|||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1620 TGATATCCTTGAGTGGGCAAAGTCCAAAAAAAATGGGTCGTTGCAAATATTATGTGAGTA 1679
Query 1664 TTACCAATTAAAATGCCCAGCAAGAGGTTCAACTATTACATTTCATCCTTTGGAGCATCT 1723
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 TTACCAATTAAAATGCCCGGCAAGAGGTTCAACTATTACATTTCATCCTTTGGAGCATCT 1739
Query 1724 TCATCCGGTTGAATATCATAGACCTGATGAAGTGGCATTGCATACTCCTGGATCAGCAAT 1783
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1740 TCATCCGGTTGAATATCATAGACCTAATGAAGTGGCATTGCATACTCCTGGATCAGCAAT 1799
Query 1784 TGACCGAAGATCATGCAGCACTAGTCTAGAACTCGTGGAGGCACACACTGCGCTCATGGC 1843
||| | ||||||||||||||||||||||||||||| |||||||||||| | ||||||||
Sbjct 1800 TGATCTAAGATCATGCAGCACTAGTCTAGAACTCGCGGAGGCACACACAACACTCATGGC 1859
Query 1844 TGAGGAAGAAGCAGCTGCACTATCAACATGGGCTGTTGCTTCGTTATGTGGATCACTGCG 1903
||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||
Sbjct 1860 TGAGGAAGAAGCAGCTGCATTATCAACATGGGCTGTTGCCTCCTTATGTGGATCACTGCG 1919
Query 1904 GCTTGACAATGTCTTGATGATCCTAGCAGGAGCACTGCTTGAGAAACAGATTGTATTTGT 1963
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1920 GCTTGACAATGTCTTGATGATACTAGCAGGAGCACTGCTTGAGAAACAGATTGTATTTGT 1979
Query 1964 TTGCTCTAATTTGGGAATCTTAGCAGCATCAGTTCTATCAATTATCCCAGTAATCCGTCC 2023
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1980 TTGCTCTAATTTGGGAATCTTAGCAGCATCAGTTTTATCAATTATCCCAGTAATCCGTCC 2039
Query 2024 CTTTCGGTGGCAGAGCCTTTTAATGCCGGTATTGCCAGATGATATGCTAGAATTTTTGGA 2083
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 2040 CTTTCGGTGGCAGAGCCTTTTAATGCCGGTTTTGCCAGATGATATGCTGGAATTTTTGGA 2099
Query 2084 TGCCCCAGTCCCGTACATAGTTGGGGTAAAGAACAAAACAAGTGAAGTTCAGTCGAAACT 2143
|||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 2100 TGCCCCAGTCCCTTACATAGTTGGGGTGAAGAACAAAACTAGCGAAGTTCAGTCGAAACT 2159
Query 2144 AACAAATGTTATCGTAGTGGATGTTTTTAAGAACCAGGTTAAGTCACCAAGTATGCCTCA 2203
||||||||||||||| |||||| || | ||||||||||||||||||||||||||||| ||
Sbjct 2160 AACAAATGTTATCGTCGTGGATATTCTAAAGAACCAGGTTAAGTCACCAAGTATGCCCCA 2219
Query 2204 GCTGCCTCAGTATCGAGACTTATATAATGCGCTAAGTCCTTATCACTCAAAGCTCGTTGG 2263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2220 GCTGCCTCAGTATCGAGACTTATATAATGCGCTAAGTCCTTATCACTCAAAGCTCGTCGG 2279
Query 2264 AGAAAGCTATCTAGCAAAGAAAAGACCAGTATATGAATGTACTGATGTGCAGGTGGATGC 2323
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2280 AGAAAGCTACCTAGCAAAGAAAAGACCAGTGTATGAATGTACTGATGTGCAGGTGGATGC 2339
Query 2324 TGCAAAAGGCTTCCTGGATGTCCTAAGGTCGTACCTTGATTCTCTTTGCTCTAGTCTGCA 2383
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2340 TGCAAAAGGCTTCATGGATGTCCTAAGGTCGTACCTTGATTCTCTTTGCTCTAATCTGCA 2399
Query 2384 GTCACACACCATAACAAATGTGCAATCCAACAACGATAAGGTATCACTTCTCCTAAAGGA 2443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2400 GTCACACACCATAACAAATGTGCAATCCAACAACGATAAGGTATCACTTCTCCTAAAGGA 2459
Query 2444 AAGTTTCATTGACTCCTTTCCTAGTCGTCAGCGCCCGTTCATGAAGCTATTCGTGGATAC 2503
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2460 AAGTTTCATCGACTCCTTTCCCAGTCGTCAGCGCCCGTTCATGAAGCTATTTGTGGATAC 2519
Query 2504 ACAACTCTTCTCTGTACATACAGATCTCGTTCTTTCCTTCATTCAGAAGCTATAGGATAA 2563
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
Sbjct 2520 ACAACTCTTCTCTGTACATACAGATCTCGTTCTTTCCTTTATCCAGAAGCTATAGGATGA 2579
Query 2564 CTACATGTATACGTAAAACAAGTCTTGTTGGTGGGAACAGAACACAATACCCCGCGATAA 2623
||||||||||||||||||||||||||| |||||| || | ||||||||| |||||| |
Sbjct 2580 CTACATGTATACGTAAAACAAGTCTTGGTGGTGG-AA-A---CACAATACCTCGCGATGA 2634
Query 2624 AAGTGCCATCGATTCTGTATTTGTAACTTACTGTTTGAGAAAATTGTCTATGGAAAAA-- 2681
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2635 AAGTGCCATCGATTCTGTATTTGTAACTTACTGTTTGAGAATGTTGTCTATGGAAAAAAA 2694
Query 2682 GACTTCCATAGATGAGGATTTGATACAGAGAACCATCATCTCCTTTGTATCCTTCAAACA 2741
||||||||||||||||| ||||||||||||||||||||| || |||||||||| ||| |
Sbjct 2695 GACTTCCATAGATGAGGGTTTGATACAGAGAACCATCATTTC-TTTGTATCCTCCAACCG 2753
Query 2742 CAAACACAGTTGGTGTTTTAACTCTTAA 2769
||||||||||||||||||||||||||||
Sbjct 2754 CAAACACAGTTGGTGTTTTAACTCTTAA 2781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137557757706
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5