BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493618
Length=2359
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35570.1 | Symbols: | O-fucosyltransferase family protein |... 1868 0.0
> AT5G35570.1 | Symbols: | O-fucosyltransferase family protein
| chr5:13749711-13753458 REVERSE LENGTH=2424
Length=2424
Score = 1868 bits (1011), Expect = 0.0
Identities = 1215/1306 (93%), Gaps = 44/1306 (3%)
Strand=Plus/Plus
Query 1 AAAAAGATAGCAACAATC---GAAGAAGAGCTTGAAATGGGCCACCACCACGACGGTGGC 57
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 40 AAAAAGATAGCAACAATCGAAGAAGAAGAGCTTGAAATGGGCCACCACCACGACGGTGGC 99
Query 58 GATGGCGTCCCTCAACATCATGTCAACAGCCCTCGATTTTCCGGTCCTATGACCCGTCGT 117
|||||||| ||||||||||| |||||||| ||||||||||||||||| ||||| ||||||
Sbjct 100 GATGGCGTACCTCAACATCACGTCAACAGTCCTCGATTTTCCGGTCCAATGACTCGTCGT 159
Query 118 GCTCAATCTTTCAAACGCGGCGGTT-C-C-GG-AGGTAGTAGC------AGCAATACTCA 167
|||||||| |||||||||||||||| | | || | |||||||| | ||||||||
Sbjct 160 GCTCAATCATTCAAACGCGGCGGTTCCGCTGGTA-GTAGTAGCAATAATAATAATACTCA 218
Query 168 ---C-------GT--CGGTGATGG---------CAACAACAC-T--TCGACCTTGAGAGT 203
| || ||||||||| ||||||||| | ||||||||||||||
Sbjct 219 CGTCGGTGTTAGTGGCGGTGATGGCAACAACAACAACAACACTTCCTCGACCTTGAGAGT 278
Query 204 TCACCACGAGATCGATCTGCCGCTTAATTCACCTAGATCAGAGATTGTTTCTGGTTCTTC 263
||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 279 TCATCACGAGATCGATCTACCGCTTAATTCACCTAGATCAGAGATTGTTTCTGGCTCTTC 338
Query 264 CGGTTCAGATCCGAGCGGTGGATTTGATTCTGCTCTCAATAGAAAGCATCAGACGTATGG 323
||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 339 CGGTTCAGATCCGAGTGGTGGATTTGATTCTGCTCTCAATAGAAAACATCAGACTTATGG 398
Query 324 GCAGTTGAGAGAGAGAGTTGTGAAAGGTTTGTTGAGGAAGCCCATGGGATCGGTTGTTTC 383
|||||| ||||||||||||||||||| |||||||||||||| |||||||| ||||| ||
Sbjct 399 TCAGTTGCGAGAGAGAGTTGTGAAAGGCTTGTTGAGGAAGCCGATGGGATCTGTTGTCTC 458
Query 384 GGATTTTAGTTTGAGAGAGAGGAAGAAACTTGGCCATTGGAtgttttttgccttttgtgg 443
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 459 GGATTTTAGTTTGAGAGAGAGGAAGAAACTTGGTCATTGGATGTTTTTTGCGTTTTGTGG 518
Query 444 tgtttgtttgtttttgggtgttttCAAGATTTGTGCTACTGGTTGGCTTGGATCTGCCAT 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGTTTGTTTGTTTTTGGGTGTTTTCAAGATTTGTGCTACTGGTTGGCTTGGATCTGCCAT 578
Query 504 TGATGGTGCTGCTTCCCATCAGGATTTATCCAACTCAATTCCCCGAGTAAATCTACTTGA 563
|||||||||||||||| ||||||||||||| | || ||||||||||||||||||||
Sbjct 579 TGATGGTGCTGCTTCCGATCAGGATTTATCTA--TC----CCCCGAGTAAATCTACTTGA 632
Query 564 TCATAGCTCCCATGATTATATCTATAAAGATGGAGGGAATGATGTTGATCCAACTTTGGT 623
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 633 TCATAGCTCCCATGATTATATCTATAAAGATGGAGGGAATGATGTTGATCCTACTTTGGT 692
Query 624 TATGGTTGCTTCAGATGTTGTGGGTGACCAAAACAGTGTAGTTGAATATTCAGGTGTCTG 683
||||||||||||||| || |||||||| ||||||||||||||||||| ||||||||||||
Sbjct 693 TATGGTTGCTTCAGACGTGGTGGGTGATCAAAACAGTGTAGTTGAATTTTCAGGTGTCTG 752
Query 684 GGCAAAACCTGAGAGTGGAAATTTCTCACGGTGCATTGACAATCCAAGGAGTCGCAAAAA 743
||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||
Sbjct 753 GGCAAAACCTGAGAGTGGAAATTTCTCGCGGTGCATTGACAGTTCAAGGAGTCGCAAAAA 812
Query 744 GTTAGGTGCTAATACGAATGGCTACCTTCTCATAAATGCTAATGGAGGACTAAACCAAAT 803
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 813 GTTGGGTGCTAATACGAATGGCTATCTTCTCATAAATGCTAATGGAGGACTAAACCAAAT 872
Query 804 GAGATTTGGGATATGTGATATGGTTGCAGTTGCTAAAATTATGAAGGCAACTTTGGTTCT 863
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 873 GAGATTTGGGATATGTGATATGGTTGCAGTGGCTAAAATTATGAAGGCAACTTTGGTTCT 932
Query 864 TCCCTCACTTGATCACAGCTCATATTGGGCAGATGACAGTGGCTTTAAGGATCTATTTGA 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 TCCCTCACTTGATCACAGCTCATATTGGGCAGATGACAGTGGCTTTAAGGATCTATTTGA 992
Query 924 TTGGCAACACTTCATAGAGGAGTTGAAGGATGATATTCACATAGTTGAGATGCTGCCATC 983
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 TTGGCAACACTTCATTGAGGAGTTGAAGGATGATATTCACATAGTTGAGATGCTGCCATC 1052
Query 984 AGAATTAGCCGGAATTGAGCCTTTCGTTAAGACACCCATATCATGGTCTAAGGTTGGTTA 1043
||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1053 AGAATTAGCCGGAATCGAGCCTTTCGTTAAGACACCCATTTCGTGGTCTAAGGTTGGTTA 1112
Query 1044 CTACAAGAGAGAGGTCCTTCCATTGTTGAAACAGCATATTGTAATGTACTTAACTCACAC 1103
|||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1113 CTACAAGAAAGAGGTCCTTCCGTTGTTGAAACAGCATATCGTAATGTACTTAACTCACAC 1172
Query 1104 TGATTCTCGGCTCGCAAACAACGACCTGCCTGATTCTGTACAAAAGCTTCGTTGCCGAGT 1163
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 TGATTCTCGGCTTGCTAACAACGACCTGCCTGATTCTGTACAAAAGCTTCGTTGCCGAGT 1232
Query 1164 AAATTACAGGGCACTGAAATATTCAGCTCCAATAGAGGAACTGGGAAACGTTCTAGTTTC 1223
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 AAATTATAGGGCGCTGAAATATTCAGCTCCAATAGAGGAACTGGGAAACGTTCTAGTTTC 1292
Query 1224 TAGAATGAGGCAGAACAGAGGTCCATACCTTGCTCTTCATTTAAGG 1269
||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1293 TAGAATGAGGCAGGACAGAGGTCCATACCTTGCTCTTCATTTAAGG 1338
Score = 1596 bits (864), Expect = 0.0
Identities = 980/1034 (95%), Gaps = 15/1034 (1%)
Strand=Plus/Plus
Query 1298 GGTATGAGAAGGATATGCTGGCTTTCACAGGCTGCAGTCATAGTTTGACAGCTGAAGAAG 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 GGTATGAGAAGGATATGCTGGCTTTCACAGGCTGCAGTCATAGTTTGACAGCTGAAGAAG 1396
Query 1358 ACGAAGAATTACGACAGATGCGGTATGAAGTTAGTCACTGGAAGGAAAAAGAAATAAATG 1417
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1397 ACGAAGAATTACGACAGATGCGGTATGAGGTTAGTCACTGGAAGGAAAAAGAAATAAATG 1456
Query 1418 GAACAGAGAGAAGATTGCAAGGTGGTTGTCCGTTGACTCCAAGGGAAACCTCGCTTTTAC 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 GAACAGAGAGAAGATTGCAAGGTGGTTGTCCGTTGACTCCAAGGGAAACCTCGCTTTTAC 1516
Query 1478 TAAGGGCTTTGGAATTCCCATCCAGCTCCCGGATTTACCTCGTAGCTGGTGAAGCATATG 1537
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1517 TGAGGGCTTTGGAATTCCCATCCAGCTCCCGGATATACCTCGTAGCTGGTGAAGCATATG 1576
Query 1538 GAAATGGAAGCATGGATCCTCTCAACACAGACTTCCCCAACATTTTCTCACATTCAATTC 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1577 GAAATGGAAGCATGGATCCTCTCAACACAGACTTCCCCAACATTTTCTCACATTCAATTC 1636
Query 1598 TTGCCACCAAAGAAGAGCTGAGTCCTTTTAATAACCACCAGAATATGTTGGCTGGTTTAG 1657
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1637 TTGCCACCAAAGAAGAGCTGAGTCCTTTTAACAACCACCAGAATATGTTGGCTGGTTTAG 1696
Query 1658 ATTATATTGTTGCACTTCAGAGTGAGGTATTTCTCTACACATATGATGGGAACATGGCAA 1717
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1697 ATTATATCGTTGCACTTCAGAGTGAGGTATTTCTCTACACATATGATGGGAACATGGCAA 1756
Query 1718 AAGCGGTTCAAGGTCACAGGCGATTCGAGGACTTCaaaaaaaCAATAAATCCAGACAAGA 1777
|||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1757 AAGCAGTTCAAGGTCACAGGCGATTCGAAGACTTCAAGAAAACAATAAATCCAGACAAGA 1816
Query 1778 TGAACTTTGTGAAACTTGTTGATGCGTTGGATGAGGGGAGAATTTCATGGAAAAAGTTCA 1837
||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 1817 TGAACTTTGTGAAACTTGTTGATGCATTAGATGAGGGAAGAATTTCATGGAAAAAGTTCA 1876
Query 1838 GTTCCAAAGTGAAAAAGCTACATAAAGACCGGAATGGAGCTCCATATAACAGAGAGCCGG 1897
||||||||||||||||||||||||||||||| || |||||||||||||| |||||| |||
Sbjct 1877 GTTCCAAAGTGAAAAAGCTACATAAAGACCGAAACGGAGCTCCATATAATAGAGAGTCGG 1936
Query 1898 GAGAGTTCCCGAAGCTGGAAGAGAGTTTTTACTCAAATCCTCTTCCCGGGTGTATTTGCG 1957
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
Sbjct 1937 GAGAGTTCCCGAAGCTGGAAGAGAGTTTCTACGCAAATCCTCTTCCCGGGTGTATTTGTG 1996
Query 1958 AGAATACAGAAGAAGAGGGTGTGATGCGACGTACATAAACATGGAGAGATGTTTCTGGTA 2017
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||
Sbjct 1997 AGAATACAGAAGAAGAGGGTCTGATGCGACGTACATAAACATGGAGAGATGTCTCTAGTA 2056
Query 2018 ATATTATTT-AGTAGCCTGAGATTTACAGTTAGCaaaaaaaGAAGAAGAGAACTGTGATT 2076
||||| ||| |||||||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct 2057 ATATTTTTTTAGTAGCCTGAGATTTACAGTTAGCAAAAAA-GAAGAAGGGAATTGTGATT 2115
Query 2077 TTTTG-TGTCCTGAAGCTAGAGAGGGTGATGATTACCAAAGCTCAAGACT-AGAAAATGG 2134
||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| |||
Sbjct 2116 TTTTGGTGTCCTGAAGCTCGAGAGGGTGATGATTACCAAAGCTCAAGACTGAGAAACTGG 2175
Query 2135 TTTCAGAGACAGATTAGAGAAGTACGGAGACAGTATCTTACTGGAATCGTTTATAAGAAA 2194
|||||||||||||||||| || |||||||||||||||||||| |||||||||| ||| ||
Sbjct 2176 TTTCAGAGACAGATTAGAAAACTACGGAGACAGTATCTTACTAGAATCGTTTACAAGGAA 2235
Query 2195 GAAACTCCGCTCAATTGTTCATCATCAGTCCGATAAAGCTCGGCTTCAGCTATGCCATGG 2254
||||||||||||||||||| | | | | ||||||||||| ||||||||||||||||
Sbjct 2236 GAAACTCCGCTCAATTGTT-A-C--C-G----ATAAAGCTCGGATTCAGCTATGCCATGG 2286
Query 2255 AGATTTGTTGAAGTGGGTAAACAAAATAGGATTCACATTGTTTGTAACACT--ACAATTG 2312
|||||||||||||||| || || ||||||||||||||||||||||||||| |||||||
Sbjct 2287 AGATTTGTTGAAGTGGATACACCGAATAGGATTCACATTGTTTGTAACACTCTACAATTG 2346
Query 2313 TCATTGTTCTTTTA 2326
||| | || |||||
Sbjct 2347 TCACTATTTTTTTA 2360
Score = 76.8 bits (41), Expect = 9e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 2316 TTGTTCTTTTACACGCATTAATAACATAGAATATATATTTCTGC 2359
||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2381 TTGTTCTTTTACACGCATTAATAACATAGAATATATATTGCTGC 2424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117117871485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5