BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493620
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35590.1 | Symbols: PAA1 | proteasome alpha subunit A1 | chr... 1434 0.0
AT2G05840.1 | Symbols: PAA2 | 20S proteasome subunit PAA2 | chr... 815 0.0
> AT5G35590.1 | Symbols: PAA1 | proteasome alpha subunit A1 | chr5:13765138-13767823
REVERSE LENGTH=1075
Length=1075
Score = 1434 bits (776), Expect = 0.0
Identities = 980/1071 (92%), Gaps = 44/1071 (4%)
Strand=Plus/Plus
Query 1 ATATACACATCTCTGATTCAACTCCGGCGAATTCAGAAGATCGAAGAAGATGAGTAGAGG 60
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 7 ATATACACATCTCTGATTCAACTCCACCGAATTCAGAAGATCGAAGAAGATGAGTAGAGG 66
Query 61 AAGCGGCGCTGGTTATGATCGTCACATCACCATCTTCTCACCGGAAGGTCGTCTCTTTCA 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 67 AAGCGGCGCTGGTTATGATCGTCACATCACTATCTTCTCACCGGAAGGTCGTCTCTTTCA 126
Query 121 AGTTGAATATGCCTTCAAGGCCGTGAAAACAGCTGGTATTACTTCAATCGGAGTTCGTGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 AGTTGAATATGCCTTCAAGGCCGTGAAAACAGCTGGTATTACTTCAATCGGAGTTCGTGG 186
Query 181 GAAAGATTCCGTTTGCGTCGTTACCCAGAAGAAAGTTCCGGACAAGCTTTTGGATCAGTC 240
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 187 GAAAGATTCGGTTTGCGTCGTTACCCAGAAGAAAGTTCCTGACAAGCTTTTGGATCAGTC 246
Query 241 TAGTGTTACACATCTGTTCCCGATTACCAAGTACATTGGATTGGTAGCTACTGGCATTAC 300
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 247 TAGTGTTACACATCTGTTCCCTATCACCAAGTACATTGGATTGGTAGCTACTGGCATTAC 306
Query 301 AGCTGATGCAAGGTCTTTGGTCCAACAAGCAAGGAATCAAGCAGCTGAATTTCGGTTCAC 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 307 AGCTGATGCAAGGTCTTTGGTTCAACAAGCAAGGAATCAAGCAGCTGAATTTCGGTTCAC 366
Query 361 TTATGGATACGAGATGCCTGTCGACATTCTTGCTAAATGGATAGCGGACAAGTCACAGGT 420
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 367 TTATGGATATGAGATGCCTGTTGACATTCTTGCTAAATGGATAGCGGACAAGTCACAGGT 426
Query 421 CTACACTCAACATGCTTACATGAGACCCCTTGGAGTTGGCGCTATGTTATTTGGCGTTGA 480
|||||||||||||||||||||||||||||||||||||| ||||||| || | || |||||
Sbjct 427 CTACACTCAACATGCTTACATGAGACCCCTTGGAGTTGTCGCTATGGTAATGGGTGTTGA 486
Query 481 TGAAGAGAATGGTCCCTTACTTTACAAATGTGACCCAGCTGGACATTTTTACGGTCACAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 TGAAGAGAATGGTCCCTTACTTTACAAATGTGACCCAGCTGGACATTTTTACGGTCACAA 546
Query 541 GGCAACGAGTGCTGGTATGAAGGAACAAGAAGCAGTCAATTTCTTGGAAAAGAAAATGAA 600
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 547 GGCAACTAGTGCTGGTATGAAGGAACAAGAAGCAGTCAATTTCTTGGAGAAGAAAATGAA 606
Query 601 AGAAAACCCAGCTTTCACATTTGATGAAACCGTGCAGACTGCCATATCCGCTTTGCAATC 660
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 607 AGAAAACCCATCTTTCACATTTGATGAAACCGTGCAGACTGCCATATCGGCTTTGCAATC 666
Query 661 TGTTCTTCAAGAAGACTTCAAGGCTACTGAGATTGAGGTAGGAGTGGTGAGAGCAGAGAA 720
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 667 TGTTCTTCAAGAAGACTTCAAGGCTACTGAGATTGAGGTAGGTGTGGTGAGAGCAGAGAA 726
Query 721 CCCAGAATTCCGTGCATTGACAACGGAGGAGATTGAGGAGCATTTGACAGCCATTAGTGA 780
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 CCCGGAATTCCGTGCATTGACAACGGAGGAGATTGAGGAGCATTTGACAGCCATTAGTGA 786
Query 781 ACGAGACTGATCGTTTTAGTGAAACAAGTGTGAGTTACGTTAAGT-G-----A-C---CA 830
|||||||||||| |||||||||||||||||||||||||| | | | | ||
Sbjct 787 ACGAGACTGATCAACTTAGTGAAACAAGTGTGAGTTACGTTGCTTCGCTTCTATCAGACA 846
Query 831 --C-TCT-------CCA-T-TA-ATC--T-TTT-GTTTGGTCTTGCTT--A-A-TTTGAT 869
| ||| ||| | | ||| | ||| |||||||||| ||| | | ||| ||
Sbjct 847 TTCCTCTAAAGTGACCACTCTCCATCGATCTTTTGTTTGGTCTTCCTTCCATAATTTAAT 906
Query 870 TTACTTAG-CAAACCCTCCAAACTTGAGAAACAAAA--GAAAAGCACTG-TTAAGGCTGT 925
|||||||| ||| ||| ||||||||| |||||||| | | | | || ||||||||||
Sbjct 907 TTACTTAGTCAA-CCCAGCAAACTTGAAAAACAAAAATGCACTGTAATGCTTAAGGCTGT 965
Query 926 GAAAGCATCCGTGTCTTTTGACTTTTCAGAAATGAC------TTCACTCATATCATCACT 979
|| || |||| ||||||||||| |||||||||||| || |||||||||||||||
Sbjct 966 GAGAGTTTCCGAGTCTTTTGACTCTTCAGAAATGACACCAACTTTACTCATATCATCACT 1025
Query 980 TTCTAGCTTTTTCTTTCTATCATAGCAGTT-CTTGTGTCTTCGTCTTCACC 1029
|||||||||||| |||||||| | |||||| || |||||||||||||||||
Sbjct 1026 TTCTAGCTTTTTATTTCTATCGTTGCAGTTGCT-GTGTCTTCGTCTTCACC 1075
> AT2G05840.1 | Symbols: PAA2 | 20S proteasome subunit PAA2 | chr2:2234092-2236294
FORWARD LENGTH=1116
Length=1116
Score = 815 bits (441), Expect = 0.0
Identities = 655/758 (86%), Gaps = 16/758 (2%)
Strand=Plus/Plus
Query 43 GAAGAAGATGAGTAGAGGAAGCGGCGCTGGTTATGATCGTCACATCACCATCTTCTCACC 102
|||||||||||| |||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 128 GAAGAAGATGAGCAGAGGAAGCGGCGCTGGTTACGATCGTCACATCACTATTTTCTCACC 187
Query 103 GGAAGGTCGTCTCTTTCAAGTTGAATATGCCTTCAAGGCCGTGAAAACAGCTGGTATTAC 162
||||||||||||||| ||||| || ||||| ||||| ||||||||| ||||||| || ||
Sbjct 188 GGAAGGTCGTCTCTTCCAAGTCGAGTATGCTTTCAAAGCCGTGAAAGCAGCTGGAATCAC 247
Query 163 TTCAATCGGAGTTCGTGGGAAAGATTCCGTTTGCGTCGTTACCCAGAAGAAAGTTCCGGA 222
|| ||||| || || ||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 248 ATCGATCGGTGTCCGAGGGAAAGATTCAGTATGCGTCGTTACGCAGAAGAAAGTTCCGGA 307
Query 223 CAAGCTTTTGGATCAGTCTAGTGT-TACACATCTGTTCCC-GATTACCAAGTACATTGGA 280
|||||||||||||||||||||||| | | || || ||||| | ||||||||||| |||||
Sbjct 308 CAAGCTTTTGGATCAGTCTAGTGTAT-CTCACCTTTTCCCTG-TTACCAAGTACCTTGGA 365
Query 281 TTGGTAGCTACTGGCATTACAGCTGATGCAAGGTCTTTGGTCCAACAAGCAAGGAATCAA 340
||| |||| |||||||| ||||||||| ||||||| ||||| |||||||| |||||| |
Sbjct 366 TTGTTAGCCACTGGCATGACAGCTGATTCAAGGTCATTGGTACAACAAGCTAGGAATGAG 425
Query 341 GCAGCTGAATTTCGGTTC-ACTTATGGATACGAGATGCCTGTC-GACATTCTTGCTAAAT 398
|| ||||| ||| ||||| | | |||| || |||||||||| | || |||||||||||||
Sbjct 426 GCTGCTGAGTTTAGGTTCCAAT-ATGGTTATGAGATGCCTG-CAGATATTCTTGCTAAAT 483
Query 399 GGATAGCGGACAAGTCACAGGTCTACACTCAACATGCTTACATGAGACCCCTTGGAGTTG 458
|||| || || ||||| ||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 484 GGATTGCAGATAAGTCTCAGGTTTACACACAACATGCTTACATGAGACCCCTTGGAGTAG 543
Query 459 GCGCTATG-TTATTTGGCGTTGATGAAGAGA-ATGGTCC-CTTACTTTACAAATGTGACC 515
|| ||| || | || |||||||||||| | || || || ||||||||| |||||||
Sbjct 544 TTGCCATGGTTCTA-GGTATTGATGAAGAGAGA-GGACCTCT-ACTTTACAAGTGTGACC 600
Query 516 CAGCTGGACATTTTTACGGTCACAAGGCAACGAGTGCTGGTATGAAGGAACAAGAAGCAG 575
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 601 CAGCTGGACATTTTTACGGTCACAAGGCAACTAGTGCTGGTATGAAAGAACAAGAAGCAG 660
Query 576 TCAATTTCTTGGAAAAGAAAATGAAAGAAAACCCAGCTTTCACATTTGATGAAACCGTGC 635
||||||||||||| |||||||||||||||||||| || ||||||| ||||||||| || |
Sbjct 661 TCAATTTCTTGGAGAAGAAAATGAAAGAAAACCCTGCCTTCACATATGATGAAACAGTAC 720
Query 636 AGACTGCCATATCCGCTTTGCAATCTGTTCTTCAAGAAGACTTCAAGGCTACTGAGATTG 695
||||||| ||||||||| | |||||||||||||||||||||||||| || ||||| ||||
Sbjct 721 AGACTGCTATATCCGCTCTCCAATCTGTTCTTCAAGAAGACTTCAAAGCAACTGAAATTG 780
Query 696 AGGTAGGAGTGGTGAGAGCAGA-GAACCCAGAATTCCGTGCATTGACAACGGAGGAGATT 754
|||| ||||| |||||||| || || ||| |||||| | ||| ||| ||||||||
Sbjct 781 AGGTGGGAGTTGTGAGAGCTGATGA-CCCTCTCTTCCGTTCCCTGAGAACAGAGGAGATC 839
Query 755 GAGGAGCATTTGACAGCCATTAGTGAACGAGACTGATC 792
|| ||||| ||||| |||||||||||||| ||||||||
Sbjct 840 GACGAGCACTTGACGGCCATTAGTGAACGTGACTGATC 877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5