BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493625
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35670.1 | Symbols: iqd33 | IQ-domain 33 | chr5:13856103-138... 1962 0.0
AT5G35680.3 | Symbols: | Nucleic acid-binding, OB-fold-like pr... 71.3 3e-11
> AT5G35670.1 | Symbols: iqd33 | IQ-domain 33 | chr5:13856103-13858059
FORWARD LENGTH=1545
Length=1545
Score = 1962 bits (1062), Expect = 0.0
Identities = 1358/1497 (91%), Gaps = 35/1497 (2%)
Strand=Plus/Plus
Query 1 GTGTTTGTTCCCATTTCTCAATTTCCAAGTTCTTAATTAAAATTGTCCTGAAACAT---- 56
||||||||||||||||||||||| |||||||||| || ||||||| |||||||||
Sbjct 1 GTGTTTGTTCCCATTTCTCAATTCCCAAGTTCTTTATCCAAATTGTTCTGAAACATAGAG 60
Query 57 AGCAA-TATGGGTGTTACAGGAGGATTAGTAAGAAGCATTTTCTTCAGAAACAAATCATT 115
|| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 61 AGAAACAATGGGTGTTACAGGAGGATTAGTCAGAAGCATTTTCTTCAGGAACAAATCATT 120
Query 116 TGGAGCTCATGACTACAACATTGGAAGAAGCAATCTTGGAGAGAAGAAAAGATGGAGCTC 175
|||||||||||||||||||| ||||||| ||||||| |||||||||||| ||||||||||
Sbjct 121 TGGAGCTCATGACTACAACAATGGAAGAGGCAATCTAGGAGAGAAGAAACGATGGAGCTC 180
Query 176 GGTTAGATCGTACCTTTGCGGAGATGAATTCAACTCTGTTCTCGCTGTGAATGATTCAGA 235
||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 181 GGTTAGATCATACCTTTGCGGAGATGAATTTAACTCTGTTCGCGCTGTGAATGATTCAGA 240
Query 236 ATCGGTCAAGGATTCTGATGCTCTGT-TTACAATGTCTCAGCATCTGAATTCAGAGTTGG 294
|||| | ||||||||||| ||||| | |||||||||||||||| |||| ||||||||| |
Sbjct 241 ATCGATAAAGGATTCTGAGGCTCT-TCTTACAATGTCTCAGCAACTGAGTTCAGAGTTCG 299
Query 295 GTGTACCTTTTGGTTCGGTTATCGCAATTGAAGATTCAGCTTCTGTGAAG-CGTTTGGAG 353
|| | ||||||||||||||||||||||| |||||||||||||||||| || | |||||||
Sbjct 300 GTATGCCTTTTGGTTCGGTTATCGCAATCGAAGATTCAGCTTCTGTG-AGACATTTGGAG 358
Query 354 GACGATGACTCTGTTTCCGTTAAGAGCTCTGAGGCAACAGTGACTCAACCTATACAGGAG 413
|| || ||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 359 GATGAGGACTCTGGTTCCGTTAAGAGCTCTGAGGCAACAGTGACTCAACCTTTACTGGAG 418
Query 414 GAGAAATCGAAAGTACT-GAGTCATTATGTAAAAGAAGAAGATATT---GATAACCAAAG 469
||||||||||||| ||| || | |||| |||||||||||||| || |||||||||||
Sbjct 419 GAGAAATCGAAAGGACTGGA-TTGTTATCTAAAAGAAGAAGATGTTGAAGATAACCAAAG 477
Query 470 CGAAGCAACAGAGACACACATACCCAAGAGGCATCAAACTACCCCAATCTCCAAGTTGCT 529
||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||| |
Sbjct 478 CGAAGCAACAGAGACACACATACCCAAGAAGCATCAGACTACTCCAATCTCCAAGTTGTT 537
Query 530 CCTCGAAGAAGACGCTGCAGTCATAATTCAGTCAGCATTCAGGAGTTACCTGGCAATACG 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CCTCGAAGAAGACGCTGCAGTCATAATTCAGTCAGCATTCAGGAGTTACCTGGCAATACG 597
Query 590 CCGGAGCAAAGAAGAAGAGAAAACATTTGCTAAGGAGGAGAGCTTCTCAGGAGACGAATC 649
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 598 CCGGAGCAAAGAAGAAGAGGAAACATTTGCTAAGGAGGAGAGCTTCTCAGGAGAGGAATC 657
Query 650 TCAAGGGAATGTATCCATGGGGACATCACTAGAAGCTCAGACAGGTAGTTCTGTGAAAGC 709
||||| |||| ||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 658 TCAAGACAATGCATCCATGGGGACATCACTAGAAGCTCAGACAGGTAATTCCGTGAAAGC 717
Query 710 ACCGTTTTTCAGGAGAAAACGAGTATCTGCAAATCGAAGATCACTACACAAGAACCAA-A 768
||| |||||||||||||| ||||||||||| ||||||||| ||||||| |||||| || |
Sbjct 718 ACCATTTTTCAGGAGAAAGCGAGTATCTGCGAATCGAAGAACACTACAGAAGAAC-AACA 776
Query 769 CTCAAATTCTGAGGATAAAGGAAGACTGGGATGATAGCACAGTGAGCAGCACCATATCAA 828
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 777 CTCAAGTTCTGAGGATAAAGGAAGACTGGGATGATAGTACAGTGAGCAGCACCATATCAA 836
Query 829 AATCGAGGATTCAAAGCAGAATCGAAGCAATGACAAAACGGGAGAGAGCACTTGCTTATG 888
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 837 AATCAAGGATTCAAAGCAGAGTCGAAGCAATGACAAAACGGGAGAGAGCACTTGCGTATG 896
Query 889 CATTTTCACAGCAGCTAAGAATTTGCTCAAAGAAGAAGCAAATGGATCGTAGCAGTGAAG 948
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 897 CATTTTCACAGCAGCTAAGAATTTGCTCAAAGAAGAAACAAATAGATCGTAGCAGTGAAG 956
Query 949 ACGATTCTAACATCAGTTGGAGTTGGCTAGAACGCTGGATGGCAACCCGAGTACCAGACA 1008
| ||||| || ||| ||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 957 ATGATTCCAATATCGGTTGGAGTTGGTTAGAACGCTGGATGGCAACCCGTGTACCAGACA 1016
Query 1009 GTATTCCAATTGAACTGAAAACAAACATTCAGACTGATGTTGCAACGAAAAATCAAAGAT 1068
| ||||||||||||| || | | || || || | | ||||||||||||||||| |
Sbjct 1017 GCATTCCAATTGAACC-AAGA-A--CA----GA-TG-T-T-GCAACGAAAAATCAAAGCT 1064
Query 1069 TGATAAGAAAGAATAGATCTTTTGGTATAGCTGGCGAGTTGGAGAGCTGTGCTTCCAACG 1128
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1065 TGATAAGAAAGAATAGAGCTTTTGGTACAGCTGGCGAGTTGGAGAGCTGTGCTTCCAACG 1124
Query 1129 ATCTACCTCTCCAGTTTGAAAGCATATCAGAGACACAAGAAGATGAAACTAAAGCTTTGC 1188
| ||||||||||| ||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct 1125 ACCTACCTCTCCATTTTGAAAGCATATCAGAGACACAAGGAGATGCAACTACAGTTTTGC 1184
Query 1189 AGACCGAAAAGAGCAGTCT-AAGAGCGAGTATATCTAAGCGCAAATCTGTTCCAAGCTAC 1247
|||||||||| || ||| | || | | |||||||||||||| ||||||||||||||||||
Sbjct 1185 AGACCGAAAAAAGTAGTTTTAA-ACCAAGTATATCTAAGCGTAAATCTGTTCCAAGCTAC 1243
Query 1248 AAAAGCCAGAGAAGGCATAACAGGCTTCAGGTAACCAAAAGTGATCTGCAACAACAAACA 1307
||||||||||||| |||| ||| |||||||| |||||||||||||||||||||||||||
Sbjct 1244 AAAAGCCAGAGAAAGCATCACAAGCTTCAGGCCACCAAAAGTGATCTGCAACAACAAACA 1303
Query 1308 AAGAAAGCTAAGAAGGCCAAGACCACACCCTCAAGCTGCAAAAGAGGAAATGAATGCGAA 1367
|||||||| ||||||||||| ||||||||| |||||||||||| |||||| |||||||||
Sbjct 1304 AAGAAAGCAAAGAAGGCCAAAACCACACCCACAAGCTGCAAAACAGGAAACGAATGCGAA 1363
Query 1368 GAAACCTCACAGAAGCTAAGTAGCAGCAAATGAGATAATCTTTACCTGTAAATCTTTGCA 1427
||||||||||| ||||||| |||||||| | |||||| | |||||||||||||||||||
Sbjct 1364 GAAACCTCACATAAGCTAAATAGCAGCACCTAAGATAAGCATTACCTGTAAATCTTTGCA 1423
Query 1428 TTTAAGTAACAAAAGTTTGTGC-----AATCTGATAACAACTTTCTGTAAATTATTT 1479
||||| | |||||||||||| | |||| |||||||||||||||||||||||||
Sbjct 1424 TTTAAATCACAAAAGTTTGTTCTTTCGAATCAGATAACAACTTTCTGTAAATTATTT 1480
Score = 71.3 bits (38), Expect = 3e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 1480 TAGTAAGGGATAAGAAACTGGAAACCCCAGAAATACAT 1517
||||||||||||||||||||||||||||||||||||||
Sbjct 1504 TAGTAAGGGATAAGAAACTGGAAACCCCAGAAATACAT 1541
> AT5G35680.3 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr5:13857921-13859013 REVERSE LENGTH=758
Length=758
Score = 71.3 bits (38), Expect = 3e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 1480 TAGTAAGGGATAAGAAACTGGAAACCCCAGAAATACAT 1517
||||||||||||||||||||||||||||||||||||||
Sbjct 661 TAGTAAGGGATAAGAAACTGGAAACCCCAGAAATACAT 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74849012595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5