BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493628
Length=1954
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35690.1 | Symbols: | CONTAINS InterPro DOMAIN/s: WLM (Inte... 1838 0.0
> AT5G35690.1 | Symbols: | CONTAINS InterPro DOMAIN/s: WLM (InterPro:IPR013536),
PUB domain (InterPro:IPR018997), PUG domain
(InterPro:IPR006567); BEST Arabidopsis thaliana protein match
is: zinc ion binding (TAIR:AT1G55915.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:13864852-13868238
REVERSE LENGTH=2108
Length=2108
Score = 1838 bits (995), Expect = 0.0
Identities = 1185/1274 (93%), Gaps = 24/1274 (2%)
Strand=Plus/Plus
Query 1 ATAATAGATTTGTTCTAACATACTAGTCTTTGCGGTTCTGTCTAAATTGAAGAATTTGTT 60
|||||| ||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||
Sbjct 17 ATAATAAATTTGTTCTTACATACTAATCTTTACGGTTCTGTCTAAATTGAAGAATTT-TT 75
Query 61 TCGTCACAAATTCTCGTG-CTTC-AGAT-TTAGCTA-ATCT-ATGGGCTTAGA-GTTCTC 114
| |||||||||||| | ||| ||| || | | || | | | | | | | ||||
Sbjct 76 TTATCACAAATTCTC-AGATTTCTTGATCTT--C-AGAT-TAACCGAATCA-ATGGTCTC 129
Query 115 TCATCGCATGGAAGATTCTA-GAAAACCAATGAGAGTTTCTGTTCTTTGGAAAGGAAACA 173
|||||||||||||||||| | ||||| ||| ||||||||| ||||||||||||||||||
Sbjct 130 TCATCGCATGGAAGATTC-AGGAAAAAAAATCAGAGTTTCTCTTCTTTGGAAAGGAAACA 188
Query 174 ATTACTCTGTTGAGATTGATTCTGGAGCTTCTCTCAAGGATTTAGGTTATGAATTGAGAA 233
| |||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 189 AATACTCTGTTGAGATCGATTCTGGAGCTTCTCTGAAAGATTTAGGTTACGAATTGAGAA 248
Query 234 AGTTAACCGGCGTTACGTCGGAGACTCTCCGTTTGATCGTTCCTCGGTTGAATGAAAAAG 293
|||||||||||||||| |||||||| || |||||||||||||| |||||||||||||||
Sbjct 249 AGTTAACCGGCGTTACATCGGAGACGCTTCGTTTGATCGTTCCAAGGTTGAATGAAAAAG 308
Query 294 GATCAAGATTGATCTTACCCTTTTCTGATGAACACTCGAGCTTGAGTTTGCAGGAATCAC 353
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 GATCAAGCTTGATGTTACCCTTTTCTGATGAACACTCGAGCTTGAGTTTGCAGGAATCAA 368
Query 354 ACATAATTGAGGATAAAACTATCAGAATGATGGGAGTGTCTGAAGAAGAGGTTGATGGAG 413
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 369 ACATAATTGAGGATAAAACTATCAGAATGATGGGAGTGTCTGAAGAAGAGGTCGAAGGTG 428
Query 414 TTTTAAAAGAGGCAGTGCCTGACATGAGGATAATTGGCTTTGAGGAAGAAGAGAGAAGGC 473
|| |||||||||||||| |||||||||||||| |||||||||||||||| || |||||||
Sbjct 429 TTCTAAAAGAGGCAGTGTCTGACATGAGGATACTTGGCTTTGAGGAAGAGGAAAGAAGGC 488
Query 474 TT-AGACAAAAGAA---GTATGTTTCAAGCGCTTCAATCAAGCTTCCACAGGGGCCTTAC 529
|| || |||||||| ||||||||| |||||||||||||||||||| || ||| |||||
Sbjct 489 TTAAG-CAAAAGAAGTCGTATGTTTCGAGCGCTTCAATCAAGCTTCCGCAAGGGACTTAC 547
Query 530 ATCTTCTGTGATTTCCGCACTCTTCAACTCCCGGGTATAGAGTTAAACCCTCCCCCTTCT 589
|||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 548 ATCTTCGGTGATTTCCGCACTCTTCAGCTCCCGGGTATAGAGTTAAACCCTCCTCCTTCT 607
Query 590 GCTGCTTTAAAGAGAATGCACATGCTTGCAGCTGACCCTGGTATTATCGCTGTTATGAAC 649
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 608 GCTGCTTTAAAGAGAATGCACATGCTTGCAGCAGACCCTGGTATTATTGCTGTTATGAAC 667
Query 650 AAGCATCGATGGAGAGTAGGGATTATGACTGAACTTGCCCCAGTTGGTTATGTTGGTGTT 709
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 668 AAGCATCGTTGGAGAGTAGGGATTATGACTGAACTTGCTCCAGTTGGTTATGTTGGTGTT 727
Query 710 AGTCCGCGATGCCTTCTGGGGTTTAACAAGAATCAAGGAGAGGAGATTTCTCTACGCCTT 769
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 AGTCCACGATGCCTTCTGGGGTTTAACAAGAATCAAGGAGAGGAGATTTCTCTACGCCTT 787
Query 770 CGGACTGATGATCTCAAGGGATTCAGAAAGTATCAGAGCATAAAAAAGACTCTATTGCAT 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 CGGACTGATGATCTCAAGGGATTCAGAAAGTATCAGAGCATAAAAAAGACTCTATTGCAT 847
Query 830 GAGCTTGCTCACATGATATACACGGAGCATGATGA-AAACTTTTATGCTCTTGATAGCCA 888
||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 848 GAGCTTGCTCACATGGTATACACGGAGCATGATGAGAAA-TTTTATGCTCTTGATAGCCA 906
Query 889 GTTGAACAAAGAAGCTGAAAGCTTAGATTGGACTAAATCAAGGGGTCACACTTTGAATGG 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 GTTGAACAAAGAAGCTGAAAGCTTAGATTGGACTAAATCAAGGGGTCACACTTTGAATGG 966
Query 949 AACAAAATTTATCAATGACGATGATGAGGAAGACTACTTCTTCGATGAAAATGAAAGTGT 1008
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 967 AACAAAATTTATCAATGACGATGATGAGGAAGACTACTTCTTCGATGAAAATGAAACTGT 1026
Query 1009 TTCTCAAAGGCTTGGTGGAAACCAGTCTGATAATCTTGGAAATGCTCGTGAATCGTCGGT 1068
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1027 TTCTCAAAGGCTTGGTGGAAACCAGTCCGATAATCTTGGAAATGCTCGTGAATCGTCTGT 1086
Query 1069 TGCTGCTGCTTATCGCCGTCTCTCCCACACAGGTGTTTCGAAACTCAGCGAAGAACCTGA 1128
||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct 1087 TGCTGCTGCTTATCGCCGTCTCTCCCATACAAGTGTTTCAAAACTCAGCGAAGAACCTGA 1146
Query 1129 TCCTGATGACTTGGTT-ATTGTTCGTGATGAGAATAAACAGCCTGTTCTCCCTAAAGCTC 1187
|||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||
Sbjct 1147 TCCTGATGACTTGGTTGAT-GTTCGTGATGAGAATAAACAGCTTGTTCTCCCTAAAGCTC 1205
Query 1188 AGTCTGATTCGATGAGTAAGTTTGAGCCTGATCCCGATGATACCACTGAAGATGATGCAA 1247
|||||||||| |||| |||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1206 AGTCTGATTCTATGACTAAGTTTGAGCCTGATCCTGATGATACCACTGCAGATGATGCAA 1265
Query 1248 CCAAAATCGAATCA 1261
|||||| |||||||
Sbjct 1266 CCAAAACCGAATCA 1279
Score = 878 bits (475), Expect = 0.0
Identities = 553/591 (94%), Gaps = 4/591 (1%)
Strand=Plus/Plus
Query 1261 AGGGGAAGGTGAAAATATGAAAATAGCAAATGACACTGTAATGTTGGGTGGGAATTTGGA 1320
|||||||| ||||||||||||||| | ||||||||||||||||||| |||||||| || |
Sbjct 1372 AGGGGAAGTTGAAAATATGAAAATTGTAAATGACACTGTAATGTTGTGTGGGAATCTGAA 1431
Query 1321 TGCAGATGAAGCTATGCAGGATACATCTGATCCTAATAATGCAGAACCGTAT-CATGACT 1379
|||||||||||||| ||||| ||| |||| ||||||||||||||||||||| || ||||
Sbjct 1432 TGCAGATGAAGCTACGCAGGCGACACCTGAGCCTAATAATGCAGAACCGTATCCA-GACT 1490
Query 1380 ATAACCTGGTGGTCACAGAGAGGGAAACAATCATGGAGGTTTATGAGCCGGATCCAGATG 1439
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1491 ATAACCTGGTGGTCACAGAGAGGGAAACAATCATGGAGGTTGATGAGCCGGATCCAGATG 1550
Query 1440 ATCAAGAAATTCAGAGGATCCAAGACTCTGTTACCATCATCTCTAACCGTCTCAAGAAAG 1499
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 ATCAAGAAATCCAGAGGATCCAAGACTCTGTTACCATCATCTCTAACCGTCTCAAGAAAG 1610
Query 1500 CCATAAATGCCTTGAAAAATGAAGTTAGCCCCGGTCAAACAACCAATGTGTTACAAATGC 1559
||||||| ||||||| ||||||||| |||||||||||| |||||| ||||||||||||||
Sbjct 1611 CCATAAAGGCCTTGAGAAATGAAGTCAGCCCCGGTCAAGCAACCACTGTGTTACAAATGC 1670
Query 1560 TTCTCAAAATAGTGAGGAACATCATTGAACAACCAAATGAAATGAAATTCAAAAGGCTGC 1619
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 TTCTCAAAATAGTCAGGAACATCATTGAACAACCAAATGAAATGAAATTCAAAAGGCTGC 1730
Query 1620 GTAAGGGAAATCCTGCAATTAAGCGCAACATTCTCAACTT-CACAGCTGCGGTTGAGATC 1678
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1731 GTAAGGGAAATCCTGCAATTAAGCGCAACATTCTCAACTTTC-CAGCTGCGGTTGAGATA 1789
Query 1679 CTTTCCGTGGTTGGATTTGTCGAAGAGATGGTATCAGAAGGCACAGGAGCGCAAGAACCA 1738
|||||||| ||||| |||||||| ||||||||||||||| |||||||||| |||||||||
Sbjct 1790 CTTTCCGTCGTTGGCTTTGTCGATGAGATGGTATCAGAAAGCACAGGAGCACAAGAACCA 1849
Query 1739 TATTTGGTACTAAAACGTAATGACCCAGGCCTCTTGTGGATTGCCAAGTCCATGATTGAA 1798
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1850 TATTTGGTACTGAAACGAAATGACCCAGGTCTCTTGTGGATTGCCAAGTCCATGATTGAA 1909
Query 1799 GAATCACACCCCACAGGTTCCTAGCTAATAATACGACAATTTCTCTGTAAA 1849
|| ||||||||||||||||||||| |||| ||| | || ||||||||||||
Sbjct 1910 GAGTCACACCCCACAGGTTCCTAGTTAATGATATGGCATTTTCTCTGTAAA 1960
Score = 124 bits (67), Expect = 3e-27
Identities = 96/109 (88%), Gaps = 5/109 (5%)
Strand=Plus/Plus
Query 1850 TGAGTATATAAGCAATAC-GTTTCTGTTACACT--ATGTACAAACAT-TTCTATAAATGG 1905
|||||||||||| | ||| |||||| ||||||| |||||||||||| || ||||||||
Sbjct 1990 TGAGTATATAAGGAGTACGGTTTCTATTACACTGCATGTACAAACATATT-TATAAATGA 2048
Query 1906 AGTCTGTGAATCTGCTGATTGTAAAGCAGAACATGCTATTTACAAGAAG 1954
|| ||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 2049 AGAGTGTGAGTCTGCTGATTGTAAAGCAGAACATGCTATTTACAGGAAG 2097
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96786650760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5