BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493632
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35735.1 | Symbols: | Auxin-responsive family protein | chr... 1977 0.0
> AT5G35735.1 | Symbols: | Auxin-responsive family protein | chr5:13900752-13902997
REVERSE LENGTH=1439
Length=1439
Score = 1977 bits (1070), Expect = 0.0
Identities = 1301/1411 (92%), Gaps = 22/1411 (2%)
Strand=Plus/Plus
Query 1 AACC-TTCAAAAACAGAACACAAAGACATGGATCGAACAAAATCTCCAAAG-CTAGCTCT 58
|||| ||| |||||||||||| |||||||||| |||||| ||||||||||| | ||||||
Sbjct 38 AACCTTTC-AAAACAGAACACGAAGACATGGACCGAACACAATCTCCAAAGAC-AGCTCT 95
Query 59 GTTCGCTGTCTTGGCCACACTCCTTATCTTAACCGTGAACGGCCAATCAGTTTGTAACAC 118
|||||| || ||||| ||||||||| ||||||||||||||||||| ||| ||||||||||
Sbjct 96 GTTCGCCGTGTTGGCAACACTCCTTGTCTTAACCGTGAACGGCCAGTCACTTTGTAACAC 155
Query 119 ACACAGGTTCACCAACAATCTCGCCTTCGCCGATTGCTCCGACCTCTCGGCCTTAGGCTC 178
||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 156 ACACAGGTTCACCAATAACCTCGCCTTCGCAGATTGCTCTGACCTCTCGGCCTTAGGCTC 215
Query 179 TTTCCTCCACTGGACTTACAACGAATC-AAACGGCACCGTTTCCATCGCCTTTCGCCATC 237
|||||| |||||||| ||||| ||| | |||||| ||||| || ||||||| |||||| |
Sbjct 216 TTTCCTTCACTGGACCTACAATGAA-CAAAACGGTACCGTCTCAATCGCCTATCGCCACC 274
Query 238 CTGGAACCTCTTCTTCTTCTTGGGTTGCTTGGGGACTTAACCCAAGTAGTACTCAGATGG 297
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 CTGGAACCTCTGCTTCTTCTTGGGTTGCTTGGGGACTTAACCCAAGTAGTACTCAGATGG 334
Query 298 TTGGGACACAAGCTCTCGTAGCCTTCAC-CA-AC-TCAAGTGGTCAATTCCAGGCCTATA 354
||||||| |||||||||||||||||||| | || ||| | ||||||||||||||||
Sbjct 335 TTGGGACGCAAGCTCTCGTAGCCTTCACAAACACAACAACTAACCAATTCCAGGCCTATA 394
Query 355 CCTCTTCCGTGAGTTCCTATGGCACGCAGCTCGAACGTAGTAGCCTAAGTTTCGGTGTGA 414
|||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||
Sbjct 395 CCTCTTCCGTGAGTTCCTATGGTACGCGGCTTGAACGTAGTAGCCTAAGTTTCGGTGTGA 454
Query 415 GTGGCGTCTCCGCGACTCTGGTCAATGGAGAGGCTACGATCTTCGCAACTCTTGAGTTGT 474
||||| |||||||||||||||||| ||| |||| ||||||||| ||||||||||||||||
Sbjct 455 GTGGCCTCTCCGCGACTCTGGTCAGTGGCGAGGTTACGATCTTTGCAACTCTTGAGTTGT 514
Query 475 CGCCGAATTTGATCACGACCAACCAGCTTTGGCAGGTGGGACCTGTTGTTAATGGTGTTC 534
| |||||| |||||||| ||||||||||||||||||||||||||||||| || |||||||
Sbjct 515 CTCCGAATCTGATCACGGCCAACCAGCTTTGGCAGGTGGGACCTGTTGTCAACGGTGTTC 574
Query 535 TTGCGAGACATCAAACGACAGGAGAGAATATGAGATCGAGTGGTAGGATTGATTTCAGGA 594
|||||| |||||||| ||||||| |||||||||||||||||||||||||||||| |||
Sbjct 575 CTGCGAGTCATCAAACCTCAGGAGATAATATGAGATCGAGTGGTAGGATTGATTTCCGGA 634
Query 595 CAGGTCAGGCATCAGCTGGTGGTGGGGGTTCCGGTGACAGGCTCAGGAAGAGAAACACGC 654
| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 635 CTGGTCAGGCATCAGCTGGTGGTGGTGGTTCCGGTGACAGGCTGAGGAAGAGAAACACGC 694
Query 655 ATGGAGTACTAAATGCGGTCAGCTGGGGTGTACTAATGCCAATGGGTGCAATGACGGCTC 714
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||
Sbjct 695 ATGGAGTACTAAATGCGGTCAGCTGGGGAGTACTAATGCCAATGGGAGCAATGATGGCTC 754
Query 715 GGTACATGAAAGTCTTCGCCGATCCAACCTGGTTCTATCTCCATATCGCCTTCCAAGTCT 774
|||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||| |
Sbjct 755 GGTACATGAAAGTCTTCGCCGATCCAACATGGTTCTATCTCCACATTGCCTTTCAAGTGT 814
Query 775 CCGGTTACGTTATCGGCGTAGCTGGTTGGGCTACCGGAATCAAGCTTGGCAATGACTCAC 834
| |||||||| ||||| ||||| |||||||| ||||||||||||||||| || |||||||
Sbjct 815 CGGGTTACGTCATCGGGGTAGCCGGTTGGGCCACCGGAATCAAGCTTGGTAACGACTCAC 874
Query 835 CCGGAACATCTTACTCAACCCATCGTAACCTTGGAATAGCACTCTTCACATTTGCCACAC 894
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 CAGGCACATCTTACTCAACCCATCGTAACCTTGGAATAGCACTCTTCACATTTGCCACAC 934
Query 895 TTCAAGTATTTGCTCTGCTTCTAAGGCCAAAGCCAGACCACAAATATCGAACGTACTGGA 954
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 935 TTCAAGTATTTGCTCTGCTTGTAAGGCCAAAGCCAGACCACAAATATCGAACGTACTGGA 994
Query 955 ACGTGTACCATCACACCGTTGGATACACAACCATCATCCTCGCCATTGTCAACATCTTT- 1013
||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 995 ACGTGTACCATCACACCGTTGGATACACAACCATCATCCTCTCTATTGTCAACAT-TTTC 1053
Query 1014 AAAGGATTCGACATTTTGGACCCGGCGGATAAATGGCGATGGGCTTACATTGGAATCCTC 1073
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1054 AAAGGATTCGACATTTTGGACCCGGAGGATAAATGGCGATGGGCTTACATTGGGATCCTC 1113
Query 1074 ATATTTCTTGGTGCTTGTATCCTTATACTTGAGCCACTCACTTGGTTCATCGTTCTTCGC 1133
|| ||||||||||||||| ||||||| || |||||||||||||||||||| |||||||||
Sbjct 1114 ATCTTTCTTGGTGCTTGTGTCCTTATTCTCGAGCCACTCACTTGGTTCATTGTTCTTCGC 1173
Query 1134 CGCAAGAGCCGTGGAGGTAACACAGTTGCTGCACCAACTTCAAACAAGTACTCTAACGGC 1193
|| ||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||
Sbjct 1174 CGTAAGAGCCGTGGAGGTAACACAGTCGCTGCACCAACTTCGAGCAAGTACTCTAACGGC 1233
Query 1194 GTCAATGGTACCACCACCACTGGACCGCATCACCAGGACGCCTAGTTTAACtttttgttt 1253
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1234 GTCAATGGTACCACCACCACTGGACCACATCACCAGGACGCCTAGTTTCACTTTTTGTTT 1293
Query 1254 ctacacttcttcttgtttcatttgttctacttctacgcgattttggattcttttttGATT 1313
|||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1294 CTACACTTGTTCTTGTTT-----GTTCTACTTCTACTCGATTTTGGATTCTTTTTTGATT 1348
Query 1314 TGATAT---GTAGGCTCATGTCTGTAT---GTATACAATTTTATTCATTGTGTTATCGAT 1367
|||||| |||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 1349 TGATATTTTGTAGGCTCATGTATGTATTATGTATACAATTTTATTCATTGTGTTATAGAT 1408
Query 1368 ATATCGATTTATGGAGTCATTAATCTTTTAT 1398
|||||||||||||||||||||||||||||||
Sbjct 1409 ATATCGATTTATGGAGTCATTAATCTTTTAT 1439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68875147740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5