BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493634
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35753.1 | Symbols: | Domain of unknown function (DUF3444) ... 484 7e-136
AT2G05230.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 169 8e-41
AT2G05250.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 169 8e-41
AT2G06390.1 | Symbols: | transposable element gene | chr2:2516... 122 6e-27
> AT5G35753.1 | Symbols: | Domain of unknown function (DUF3444)
| chr5:13922569-13925272 REVERSE LENGTH=1927
Length=1927
Score = 484 bits (262), Expect = 7e-136
Identities = 308/330 (93%), Gaps = 3/330 (1%)
Strand=Plus/Plus
Query 1045 GATATTTGGGA-TGTGTACAAGAACTGGTCACCAAACTGGAACAACTCAACTCTAGATGA 1103
||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1580 GATATTT-GGACTGTGTACAAGAACTGGTCACCAAACTGGAACAACTCAACTCCAGATGA 1638
Query 1104 AGTGAGGCATCAGTACGAAATGGTTGAGATACTTGATGAATATTCTGAACAGTTTGGGGT 1163
||||||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1639 AGTGAGGCACCAATACAAAATGGTTGAGATCCTTGATGAATATTCTGAACAGTTTGGGGT 1698
Query 1164 TTGCATCGCCCCGCTAGTAAAAGTAGAGGGATACAAAACCGTGTATTGCAGGAGAGATAC 1223
||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 1699 TTGCATCGCCCCGCTTGTGAAAGTAGATGGATACAAAACCGTGTATTGCAGGAGAGATAA 1758
Query 1224 GGAGGAGAGCAAGAAATGGATACAA-GGAGAGAGATGCTGCGGTTTTCGCATCCAGTGCC 1282
||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||
Sbjct 1759 GGAGGAGAGCAAGAAATGGATACCGCGGAGAGAGATGCTGCGATTTTCGCATCAAGTGCC 1818
Query 1283 ATCTTGGTTTCTTAAAGAAGAAACTAGTGGTGTGCCCAGAAACTATTGGGACTTGGACCC 1342
|||| |||||||||||||||||||| ||||||||||| |||||| ||||||||| |||||
Sbjct 1819 ATCTCGGTTTCTTAAAGAAGAAACTTGTGGTGTGCCCGGAAACTGTTGGGACTTAGACCC 1878
Query 1343 AGCTGCTATACCAGAAGAGTTGCTTCACAA 1372
| ||||||||||||||||||||||||||||
Sbjct 1879 ATCTGCTATACCAGAAGAGTTGCTTCACAA 1908
Score = 411 bits (222), Expect = 1e-113
Identities = 264/285 (93%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 4 CTTGATACTTTCTGGACTGTATGCACATCGTGCAAAGTTCAGTATGAATATCTACGGAAG 63
|||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||
Sbjct 422 CTTGATACTTTCTGGACTGTATGCACATATTGCAAGGTTCAGTATGAGTATCTGCGGAAG 481
Query 64 CATGTGAATAAGAGGCTGTCATGTAAGAACTGTCGAGGAGCATTTATTTCTGTGGATACT 123
|||||||||||||| |||||||||||||||| ||||| ||||||||| ||||||| |||
Sbjct 482 TATGTGAATAAGAGGTTGTCATGTAAGAACTGCCGAGGTGCATTTATTGCTGTGGAGACT 541
Query 124 AGGTCGGCTCCTGTTAGTGCATCACTTCAATATGCGCCTTCATCTCATACAACATGTAAT 183
|| ||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||
Sbjct 542 GGGCCGGCTCCTGTTAGTGCATCACTTCAGTATGCGCCTCCATCTCATACAACAAGTAAT 601
Query 184 GGCTATGGAGCTCATGGCTATGATGCCGTCTCACGCATGCCTACCAATTCCACTTATTTC 243
|||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 602 GGCTATGGAGGTCATGGCTATGATGCTGTTTCACGCATGCCTACCAATTCCACTTATTTC 661
Query 244 TTAGGTCAGTATCTTGCACATGGATATGAATATGTTACAAATGAG 288
||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 662 TTAGGTCAGTATCCAGCACATGGATATGAATATGTTACAAATGAG 706
Score = 239 bits (129), Expect = 6e-62
Identities = 141/147 (96%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 897 CTCCAAAACTGACATTGAGTTTGGTACAATGAAATGGGTGCAGTATGGGTTTACAAAGTC 956
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 CTCCAAAACTGACATCGAGTTTGGTACAATGAAATGGGTGCAGTATGGGTTTACAAAGTC 1458
Query 957 GTGTGGACATTTCCGGATACGAAACACTGACATAATTGATCATGTTAACATATTTTCCCA 1016
||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1459 GTGTGGACATTTCAGGATACGAAATACTGACATAGTTGATCATGTTAACATATTTTCCCA 1518
Query 1017 TCTCTTGAAAGGCAAGAAAACGGGAAG 1043
|||||| |||||||||||||| |||||
Sbjct 1519 TCTCTTAAAAGGCAAGAAAACAGGAAG 1545
Score = 165 bits (89), Expect = 1e-39
Identities = 107/116 (92%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 778 ACTCCGACTTCCATGACTTTGATAAAAACAGATCAAAGAAGTGCTTTGAGGCTAGGCAAA 837
|||||||||||||||||||||||||||| |||| | || ||||||| |||||||||||||
Sbjct 1236 ACTCCGACTTCCATGACTTTGATAAAAATAGATTAGAGGAGTGCTTCGAGGCTAGGCAAA 1295
Query 838 TATGGGCAATTTAAGATGAAGATGATGGTATGTTGCGCTTATATTGCATGGTCCGG 893
||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1296 TATGGGCAATTTATGATGAAGATGATGGTATGCCACGCTTATATTGCATGGTCCGG 1351
Score = 163 bits (88), Expect = 4e-39
Identities = 115/128 (90%), Gaps = 2/128 (2%)
Strand=Plus/Plus
Query 651 ATTGGCTTCAGAAGCTGCAGCGGCGGCTACAGAGGACGCGACTCCCCTTGATGAAGTAAG 710
|||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 1075 ATTGGCTTCAGAAGCTGCTGCGACAGCTACAGAGGACGCGACTCCCCTTGATGAAGTAAG 1134
Query 711 TGCCCCCTACAAGGTAGGGGATGATATATCCAGAATAG-AACAAAATGTTTCCTCTGGTC 769
||| ||| |||||| ||||||||| |||||||| ||| || |||||||||| | |||||
Sbjct 1135 TGCGTCCTCCAAGGTGGGGGATGATGTATCCAGATTAGGAA-AAAATGTTTCTTTTGGTC 1193
Query 770 ATCCACCT 777
||||||||
Sbjct 1194 ATCCACCT 1201
> AT2G05230.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr2:1899507-1902802 REVERSE LENGTH=2849
Length=2849
Score = 169 bits (91), Expect = 8e-41
Identities = 129/147 (88%), Gaps = 3/147 (2%)
Strand=Plus/Plus
Query 897 CTCCAAAACTGACATTGAGTTT-GGTACAATGAAATGGGTGCAGTATGGGTTTACAAAGT 955
||| ||||| ||||| |||||| ||| ||||||||||||| || ||||||||||||||||
Sbjct 2010 CTCTAAAACCGACATCGAGTTTGGGT-CAATGAAATGGGTACAATATGGGTTTACAAAGT 2068
Query 956 CGTGTGGACATTTCCGGATACGAAACACTGACATAATTGATCATGTTAACATATTTTCCC 1015
|||||||||||||| ||||||||||| |||||||| | || ||||||||||| ||||| |
Sbjct 2069 CGTGTGGACATTTCAGGATACGAAACTCTGACATAGTAGACCATGTTAACATCTTTTCGC 2128
Query 1016 ATCTCTTGAAAGGCAAGAAAAC-GGGA 1041
|||| || ||||||||||| || ||||
Sbjct 2129 ATCTTTTAAAAGGCAAGAAGACAGGGA 2155
> AT2G05250.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr2:1913338-1916623 REVERSE LENGTH=2839
Length=2839
Score = 169 bits (91), Expect = 8e-41
Identities = 129/147 (88%), Gaps = 3/147 (2%)
Strand=Plus/Plus
Query 897 CTCCAAAACTGACATTGAGTTT-GGTACAATGAAATGGGTGCAGTATGGGTTTACAAAGT 955
||| ||||| ||||| |||||| ||| ||||||||||||| || ||||||||||||||||
Sbjct 2004 CTCTAAAACCGACATCGAGTTTGGGT-CAATGAAATGGGTACAATATGGGTTTACAAAGT 2062
Query 956 CGTGTGGACATTTCCGGATACGAAACACTGACATAATTGATCATGTTAACATATTTTCCC 1015
|||||||||||||| ||||||||||| |||||||| | || ||||||||||| ||||| |
Sbjct 2063 CGTGTGGACATTTCAGGATACGAAACTCTGACATAGTAGACCATGTTAACATCTTTTCGC 2122
Query 1016 ATCTCTTGAAAGGCAAGAAAAC-GGGA 1041
|||| || ||||||||||| || ||||
Sbjct 2123 ATCTTTTAAAAGGCAAGAAGACAGGGA 2149
> AT2G06390.1 | Symbols: | transposable element gene | chr2:2516586-2516712
REVERSE LENGTH=127
Length=127
Score = 122 bits (66), Expect = 6e-27
Identities = 74/78 (95%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 570 AGAGAACTCCACAGTTAAGCGTGCTTGGACTGGAGTAGTTTTAGGATGGGTGACCTTCTG 629
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 81 AGAGAACTCTACAGTTAAGCGTGCTTGGACTGGAGTAGTTTCAGGATGGGTGACCTTCCG 22
Query 630 GAAAGTGATTGTCGGAAC 647
| ||||||||||||||||
Sbjct 21 GGAAGTGATTGTCGGAAC 4
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68272741200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5