BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493636
Length=1848
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35790.1 | Symbols: G6PD1 | glucose-6-phosphate dehydrogenas... 2857 0.0
> AT5G35790.1 | Symbols: G6PD1 | glucose-6-phosphate dehydrogenase
1 | chr5:13956690-13959753 REVERSE LENGTH=1987
Length=1987
Score = 2857 bits (1547), Expect = 0.0
Identities = 1743/1838 (95%), Gaps = 11/1838 (1%)
Strand=Plus/Plus
Query 11 CATCATC-TCACAATTGTTTTGACGCTCCAAGAAAATTTGCATGGCGACACATTCTATGA 69
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27 CATCATCATCACATTTGTTTTGACGCTCCAAGAAAATTTGCATGGCGACACATTCTATGA 86
Query 70 TCATTCCTTCTTCTTCCTCATCTTCTTCCTCGGCTCTCGCTGCTGCTGCGACGTCTCCGT 129
||||||||||| ||| || |||||||||||| |||||||| ||||| | |||||||||
Sbjct 87 TCATTCCTTCTCCTT-CT--TCTTCTTCCTCGTCTCTCGCTACTGCT--G-CGTCTCCGT 140
Query 130 TTAAAGAGACTCTACCACTCTTTGGTAGATCTCTCACATTCCAGAGAAAATCC-TGTTTT 188
||||||||||||||||||||||| |||||||||||||||||| |||||||||| || |||
Sbjct 141 TTAAAGAGACTCTACCACTCTTTAGTAGATCTCTCACATTCCCGAGAAAATCCTTG-TTT 199
Query 189 TCTCAGGTTCGCTTGAGATTCTTCGCCGAGAAACATTCTCAGCTTGAAT-CTTCAAATGG 247
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 200 TCTCAGGTTCGCTTGAGATTCTTCGCCGAGAAACATTCTCAGCTTG-ATACTTCAAATGG 258
Query 248 GTGTGCTACAAATTTCGCTTCTTTACAAGACTCTGGAGATCATCCAACAGAGGAACATGT 307
|||||| || |||||||||||||||||||| ||||||||||| | ||||||||||||||
Sbjct 259 GTGTGCCACTAATTTCGCTTCTTTACAAGATTCTGGAGATCAACTTACAGAGGAACATGT 318
Query 308 TACAAAAGGAGAGTCTACACTTAGTATTACAGTCGTTGGAGCGTCGGGGGACTTGGCCAA 367
|||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||
Sbjct 319 TACAAAAGGAGAGTCTACTCTTAGTATTACAGTTGTTGGAGCGTCAGGGGACTTAGCCAA 378
Query 368 GAAGAAGATATTTCCTGCATTGTTTGCTCTCTTTTATGAGGGTTGTCTTCCTCAGGACTT 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 GAAGAAGATATTTCCTGCATTGTTTGCTCTCTTTTATGAGGGTTGTCTTCCTCAGGACTT 438
Query 428 TTCTGTTTTTGGTTATGCTCGGACTAAACTCACTCATGAGGAGCTTCGTGATATGATTAG 487
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 439 TTCTGTTTTTGGTTATGCTCGGACTAAACTCACTCATGAAGAGCTTCGTGACATGATTAG 498
Query 488 TAGCACTTTAACTTGCCGGATTGATCAAAGGGAAAATTGTGGGGATAAGATGGATCAGTT 547
||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 499 TAGTACTTTAACTTGCCGGATTGATCAGAGGGAAAAATGTGGGGATAAGATGGAGCAGTT 558
Query 548 CTTGAAAAGATGCTTTTACCATTCGGGCCAGTATAATTCTGAAGAGGATTTTGCAGAACT 607
||||||||||||||||||||||||||| |||||||| || |||||||||||||| |||||
Sbjct 559 CTTGAAAAGATGCTTTTACCATTCGGGTCAGTATAACTCGGAAGAGGATTTTGCGGAACT 618
Query 608 AAACACCAAGCTTAAAGAGAAAGAGGCAGGAAAGCTAGCAAACAGGCTGTACTATTTGTC 667
||||| ||||| ||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 619 AAACAAGAAGCTCAAAGAGAAAGAGGCAGGAAAGATATCAAACAGGCTGTACTATTTGTC 678
Query 668 GATACCACCAAATATATTCGTCGATGTGGTAAGGTGTGCAAGCCTTAGAGCATCCTCAGC 727
|||||| ||||| |||||||| |||||||| ||||||||||| |||||||| |||||||
Sbjct 679 GATACCCCCAAACATATTCGTTGATGTGGTTAGGTGTGCAAGTCTTAGAGCCTCCTCAGA 738
Query 728 TAATGGCTGGACAAGGGTCATTGTCGAAAAGCCATTTGGTCGTGACTCTGAATCATCTGG 787
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 739 GAATGGCTGGACAAGGGTCATTGTGGAAAAGCCATTTGGTCGTGACTCTGAATCATCCGG 798
Query 788 AGAGTTAACTAGATGTCTGAAACAGTATCTTACAGAAGAGCAAATTTTCAGGATTGACCA 847
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 799 AGAGTTAACTAGATGTCTGAAACAGTATCTTACAGAGGAGCAAATCTTCAGGATTGATCA 858
Query 848 CTATTTAGGAAAGGAGCTTGTTGAGAACCTTTCAGTGCTTCGATTCTCGAATCTCGTTTT 907
|||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 859 CTATTTGGGAAAGGAGCTTGTTGAGAACCTTTCAGTGCTCCGATTCTCAAATCTTGTTTT 918
Query 908 TGAACCTCTATGGTCGAGAAATTACATACGCAATGTTCAACTGATTTTTTCTGAAGATTT 967
|| ||||| ||||| ||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 919 CGAGCCTCTGTGGTCAAGAAATTACATACGCAACGTTCAGCTGATTTTTTCTGAGGATTT 978
Query 968 TGGAACAGAAGGGCGTGGAGGTTACTTTGATCAGTATGGAATCATACGAGACATCATGCA 1027
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 979 CGGAACAGAAGGGCGTGGAGGTTACTTTGATCAATATGGAATCATACGAGACATCATGCA 1038
Query 1028 AAACCATCTCTTGCAAATACTCGCACTTTTCGCAATGGAGACACCTGTGAGCTTAGATGC 1087
||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct 1039 AAACCATCTCTTGCAAATACTTGCACTTTTTGCAATGGAGACGCCAGTGAGCTTAGATGC 1098
Query 1088 TGAGGACATAAGAAGCGAAAAGGTGAAAGTTTTGAGATCAATGAAACCGTTACTGCTTGA 1147
||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1099 TGAGGACATAAGAAGTGAAAAGGTGAAAGTTTTGAGATCAATGAAACCGTTGCGGCTTGA 1158
Query 1148 AAATGTGGTTGTTGGTCAATACAAAGGGCATAACAAGGGAGGAAAGACTTATCCAGGTTA 1207
| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1159 AGATGTGGTTGTTGGTCAATACAAAGGCCATAACAAGGGAGGAAAAACTTATCCAGGTTA 1218
Query 1208 TACAGACGATCCAACGGTTCCAAATCACAGTCTCACTCCTACATTTGCTGCAGCAGCCAT 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 TACAGACGATCCAACGGTTCCAAATCACAGTCTCACTCCTACATTTGCTGCAGCAGCCAT 1278
Query 1268 GTTCATCAACAATGCGAGATGGGACGGTGTTCCTTTTCTTATGAAAGCCGGAAAAGCTCT 1327
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1279 GTTCATCAACAATGCGAGATGGGACGGTGTTCCTTTTCTTATGAAAGCTGGAAAAGCTCT 1338
Query 1328 CCATACCAGAGGAGCAGAGATCAGAGTTCAGTTCAGACATGTCCCAGGAAACTTGTACAA 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 CCATACCAGAGGAGCAGAGATCAGAGTTCAGTTCAGACATGTCCCAGGAAACTTGTACAA 1398
Query 1388 GAAAAATTTTGCGACTAATTTAGACAATGCAACTAATGAACTAGTGATCAGAGTTCAGCC 1447
||||| |||||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1399 GAAAAGTTTTGCTACTAATTTAGACAATGCAACAAATGAACTAGTGATTAGAGTTCAGCC 1458
Query 1448 TGATGAAGGCATATACCTGAGGATCAACAACAAAGTCCCTGGTCTTGGAATGAGACTAGA 1507
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1459 TGATGAAGGGATATACCTGAGGATCAACAACAAAGTTCCTGGTCTTGGAATGAGACTAGA 1518
Query 1508 TCGCAGCGACCTTAACCTTCTATACCGATCCAGGTATCCAAGAGAGATACCAGATGCATA 1567
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1519 TCGCAGCGACCTTAACCTTCTATATCGATCCAGGTATCCAAGAGAGATACCAGATGCATA 1578
Query 1568 TGAAAGACTGCTTCTTGATGCAATCGAAGGAGAGAGAAGGTTGTTTATCAGAAGTGATGA 1627
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1579 TGAAAGACTGCTTCTCGATGCAATCGAAGGAGAGAGGAGGTTGTTTATCAGAAGTGATGA 1638
Query 1628 GCTAGATGCAGCATGGGATTTATTCACACCGGCTTTGAAGGAACTCGAGGAGAAGAAAAT 1687
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1639 GCTAGATGCAGCATGGGATCTATTCACACCGGCTTTGAAGGAACTAGAGGAGAAGAAAAT 1698
Query 1688 CATTCCTGAGCTCTATCCATATGGAAGCAGAGGTCCTGTTGGTGCACATTACCTTGCATC 1747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1699 CATTCCTGAGCTCTATCCATATGGAAGCAGAGGTCCTGTTGGTGCACATTACCTTGCATC 1758
Query 1748 TAAGTATAATGTGAGATGGGGAGATCTTGGAGAAGCTTAAGCTTTCGACAGAAACAAAAT 1807
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1759 TAAGTACAATGTGAGATGGGGAGATCTTGGAGAAGCTTAAGCTTTCGACAGAAACAATAT 1818
Query 1808 GATTTGGTGTTGATATGAGAAAACTTACTTGTCGATAT 1845
||||||||||| ||||||| ||||| ||||||||||||
Sbjct 1819 GATTTGGTGTTAATATGAGTAAACTAACTTGTCGATAT 1856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91465392990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5