BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493638

Length=588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G35870.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   845    0.0  
  AT2G04480.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...  78.7    6e-14


> AT5G35870.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G04480.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:14021022-14021612 FORWARD LENGTH=591
Length=591

 Score =  845 bits (457),  Expect = 0.0
 Identities = 549/593 (93%), Gaps = 7/593 (1%)
 Strand=Plus/Plus

Query  1    ATGGTTGAACTCTTGTTTCTACTATCCTTTTTAGTGGAACTACAAAGTAATTGCTTTCAT  60
            ||||||||| |||| ||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct  1    ATGGTTGAAATCTTATTTCTTCTATCTTTTTTGGTGGAACTACAAAGTAATTGCTTTCAT  60

Query  61   ATGAATCTTGAGAGCATAAAAATGAAAGAAGGGGTCATGAGTTTTATTTCATTACTTTTT  120
            |||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||||
Sbjct  61   ATGAATCTTGAGAGCATAAAAATGAACGAAGGGGTCATGAGTTTTATTTTATTGCGTTTT  120

Query  121  AAGAGACCAGTTTCATGGTTATCTTTTCTTGCCCTACCTCTTCTTCACATTGTAGGACTT  180
            ||||||||||| |||||||| ||||||||||||| ||| |||||||||||  ||||||||
Sbjct  121  AAGAGACCAGTGTCATGGTTGTCTTTTCTTGCCCCACCACTTCTTCACATCATAGGACTT  180

Query  181  GGGTTCTCACAAATCTTCCTAACCTCAGCTGCTTTGTTCTTCTCCTCTTTCTTCTTCCCT  240
            |||||||| |||||| |||||||||||||||| ||||||||||| |||||||||||||||
Sbjct  181  GGGTTCTCGCAAATCATCCTAACCTCAGCTGCATTGTTCTTCTCATCTTTCTTCTTCCCT  240

Query  241  CTCTCAATCCAAAAACCAAACTCCAAGGTTCAAGATCATAGCCAACAAGACT-CTTTAGG  299
            ||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||
Sbjct  241  CTCTCAATCCAAAAACCAAACTCCAAGGTTCAAGATCTTAGTCAACAAGACTACTT-AGG  299

Query  300  ACAAAGTGAAGTA-C--CTACGACCACTGATGATATTGTCAAAAATAATGACGAAGACGA  356
            | | | |||| || |  ||||||||||| |||||||||||||||||||||||||||| ||
Sbjct  300  AGAGACTGAACTATCATCTACGACCACTAATGATATTGTCAAAAATAATGACGAAGATGA  359

Query  357  CGGGACAATCCCTGATGAGGAAAGTCTCATAGAGCTCTCCTTACCAAGTGGTCACTACAT  416
            |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct  360  CGGGACAATCCCTGATGAGGAAAGTCTCATAGAGCTCTCCTTACCAAGCGGCCATTACAT  419

Query  417  TGGCCACCACTACAGTACTATGATTGGTAAA-AATGATCAAAGGATCATGTACAACAACA  475
            |||||||||||| |||||||||||||||||| || ||||||| |||||||||||||||||
Sbjct  420  TGGCCACCACTATAGTACTATGATTGGTAAACAA-GATCAAAAGATCATGTACAACAACA  478

Query  476  TACCAGATTTCAGGCTTATTCAACTATCAGCCGAGTATGAAGACGATAATCTGATCGAAA  535
            | ||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||
Sbjct  479  TCCCAGATTTCAGGCTTATCCAATTATCAGCCGAGTATGAAGACGATAATCTCATCGAAA  538

Query  536  TCGACATTTCCATCGGATCCATCAAGTGTTCAAGGTTCCAGATCAAAGCCTGA  588
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  539  TCGACATTTCCATCGGATCGATCAAGTGTTCAAGGTTCCAGATCAAAGCCTGA  591


> AT2G04480.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G35870.1); 
Has 38 Blast hits to 38 proteins in 9 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:1554282-1555514 
REVERSE LENGTH=744
Length=744

 Score = 78.7 bits (42),  Expect = 6e-14
 Identities = 101/129 (78%), Gaps = 6/129 (5%)
 Strand=Plus/Plus

Query  121  AAGAGACCAGTTTCATGGTTATCTTTTCTTG-CCCTACCTCTTCTTCACATTGTAGGAC-  178
            ||||||||  |||||||| | ||| | || | |||| || |||||||||||  | || | 
Sbjct  259  AAGAGACCTTTTTCATGGGTCTCTCTCCTCGCCCCT-CCACTTCTTCACATCCTTGG-CA  316

Query  179  TTGGGTTCTCACAAATCTTCCTAACCT-CAGCTGCTTTGTTCTTCTCCTCTTTCTTCTTC  237
            || | |||| |||  || |||| || |  | |||||||||||||||||||||||||||||
Sbjct  317  TTCGCTTCTTACATCTCCTCCTTACTTGTA-CTGCTTTGTTCTTCTCCTCTTTCTTCTTC  375

Query  238  CCTCTCTCA  246
            ||  |||||
Sbjct  376  CCAATCTCA  384



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28281824761


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5