BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493648
Length=1637
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38640.1 | Symbols: | Plasma-membrane choline transporter f... 1509 0.0
> AT4G38640.1 | Symbols: | Plasma-membrane choline transporter
family protein | chr4:18059653-18062289 REVERSE LENGTH=2100
Length=2100
Score = 1509 bits (817), Expect = 0.0
Identities = 963/1031 (93%), Gaps = 20/1031 (2%)
Strand=Plus/Plus
Query 314 CGTCCTGCTTTTGCTCAAACACTACACTAAGCAGATTGTTTATGCTTGTTTACCTCTCTT 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 CGTCCTGCTTTTGCTCAAACACTACACTAAGCAGATTGTTTATGCTTGTTTACCTCTCTT 734
Query 374 TGTCCTTTTCCCCATCTTTTTTCAATGTCTATTGGTTTGTCGCTTGTACTCTTAGCTCTT 433
||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 735 TGTCCTTTTTCCCATCTTTTT-CAATGTCTATTGGTTTGTCGCCTGTACTCTTAGCTCTT 793
Query 434 CTTGTAGCGACACCCTCCCTCTAGCTTACAGAATTCTTGTCCTAGTCTTCGTTTTCTTGA 493
|||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 794 CTTGTAGCGATGCCCTCCCTCTAGCTTACAGAATACTTGTCCTAGTCTTTGTTTTCTTGA 853
Query 494 TCATCGGGATCGTTGTCTGGATCATAGTAGCTAATTGGCACAAGA-TTGAGCTCACTATC 552
||||||||||| |||||||||||||||||||||||||||||| || |||| || ||||||
Sbjct 854 TCATCGGGATCATTGTCTGGATCATAGTAGCTAATTGGCACA-GAATTGATCTTACTATC 912
Query 553 CAAATCATCAGTGTTGCATCGGATGCCTTGTCCAAAAATTTGAAACTTTTTGTTGTGTTG 612
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 913 CAAATCATCAGTGTTGCATCTGATGCCTTGTCCAAAAATTTGAAACTTTTTGTTGTGCTG 972
Query 613 CCGCTGCTGATTCTCGGGCTAGTGGTGTACTATGCGCCGATTGTGGTGTTCTTGGTGTTT 672
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 973 CCGCTGCTGACTCTCGGGTTAGTGGTGTACTATGCGCCGATTGTGGTGTTCTTGGTGTTT 1032
Query 673 GCAAAGTTTAATGGGAAGTTTGTGCCGCGAGAGTTGGATGGTCACTACTTTTGTGAGTGG 732
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1033 GCAAGGTTTAATGGGAAGTTTGTGCCGCGAGAGTTGGATGGTCAGTACTTTTGTGAGTGG 1092
Query 733 AAGGAAGATTCTTGGGTTCCTGCCTGCCTATTATG-TGCTTGCCATTTTAACGATGATCT 791
|| |||||||||||||||||||| | ||||| | | ||||||||||||||||||||||
Sbjct 1093 AAAGAAGATTCTTGGGTTCCTGC--G--TATTACGCT-CTTGCCATTTTAACGATGATCT 1147
Query 792 GGTCTCTTGCTGTAATGGTGGAAATGCACGTGTATGTGATAAGTGGAACTATTGCTCAGT 851
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1148 GGTCTCTTGCTGTAATGGTGGAAATGCAAGTGTATGTGATAAGTGGAGCTATTGCTCAGT 1207
Query 852 GGTATTTCTCCAAGGAAGACTCAATGTCTCCAAATCTGT-TGTTG-GCTTATGTCAAATC 909
||||||||||||||||||||||||| || ||| || | | | || | | |
Sbjct 1208 GGTATTTCTCCAAGGAAGACTCAATCCCTAAAAAA-TGCATCCGGAG-TTCT-T----TG 1260
Query 910 ATGAACGCATTTGGTCAATCCTTTGGTACAATATGTGTATCAGGACTTCTCATCTGCATT 969
| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1261 AGGAATGCATTTGGTCAATCCTTTGGTACGATATGTGTATCAGGACTTCTCATATGCATT 1320
Query 970 GTTCGTGTGGTCCGGGCAATTGTGGACAATGCAAGAGAAGAGAACCCACAAGGGATAGTG 1029
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1321 GTTCGTGTGGTCCGGGCAATTGTGGACAATGCAAGAGAAGAGAACACACAAGGAATAGTG 1380
Query 1030 AACATGGTTCTCCTTTGCTGCGCAAACGCCTTACTTGGAGCCCTTGACTATCTCAACAAG 1089
||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1381 AACATGGTTCTCCGTTGCTGTGCAAACGCCTTACTTGGTGCCCTTGACTATCTCAACAAG 1440
Query 1090 TTCACCATCGAA-TTTGCTGCAATAACAGGGGAAGCCTATTGCACCTCTGCAAAAATGAC 1148
||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1441 TTCACCATC-AACTTTGCTGCAATAACAGGGGAAGCGTATTGCACCTCTGCGAAAATGAC 1499
Query 1149 TTACGAGCTCTTAAGACGCAACCTACTGTCAGCTGAATTTGTCGAAACGGTTTCCACCAG 1208
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1500 TTACGAGCTGTTAAGACGCAACCTACTGTCAGCTGTATTTGTCGAAACGGTTTCCACCAG 1559
Query 1209 AATCCTAACCGGAATAGTCTTTGTCCTCTCAGCCGCATATGCAGTCGCGACATGGGCTGT 1268
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1560 AATCCTAACCGGAATAGTCTTTGTCCTGTCAGCCGCATATGCAGTCGCGACATGGGCTGT 1619
Query 1269 TCTGAGAGGAGTGAGCAACCTGGGTATAGATTCGTATGTGGTGGCTATACTCGCGTGGCT 1328
|||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| |
Sbjct 1620 TCTGAGAGGAGTGAGCAACCTGGGTATAGATTCGTACGTGGTGGCTGTACTGGCGTGGGT 1679
Query 1329 GTTACTGATTG 1339
|||||||||||
Sbjct 1680 GTTACTGATTG 1690
Score = 363 bits (196), Expect = 4e-99
Identities = 252/277 (91%), Gaps = 12/277 (4%)
Strand=Plus/Plus
Query 40 TCCGATCC-ACTCAGTTTCTTCAGA--T-CTATAATTTTGGCCCCAGAACTTTCAAGGAC 95
||||| || |||||||||||||||| | ||| ||||||||||| |||||||||||||||
Sbjct 325 TCCGACCCAACTCAGTTTCTTCAGATCTCCTACAATTTTGGCCCAAGAACTTTCAAGGAC 384
Query 96 ATCCCTTTCCTACTTGAACTTCTCTTCGATCTTCTCGTACTCTCCACTTTTGGTTTCGGA 155
|||||||| | | | |||||||||||||||||||||||||||||| |||||||| |||
Sbjct 385 ATCCCTTT-C--C-T--ACTTCTCTTCGATCTTCTCGTACTCTCCACCTTTGGTTTTGGA 438
Query 156 ATCTTCTCCATTTT-CATTAGAAATAGCGATTACGGGAGCTCCTCTTCCTTCACCTACGA 214
|||||||||||||| ||| ||||||| ||||||||||| |||||||||||||||||||||
Sbjct 439 ATCTTCTCCATTTTTCAT-AGAAATAACGATTACGGGAACTCCTCTTCCTTCACCTACGA 497
Query 215 CTTCACCTCTAGCTCCTGCGTCAAAAATTCCACCTTTACGAAATTTTCGGATGGATACTA 274
||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||
Sbjct 498 TTTCACCTCTAGCTCCTGCGTCAAAAATTCTACCTTTACGAAAATTTCGGATGGGTACTA 557
Query 275 CTGGGCTTCTTCCAGTGTCATGTACGGTATGGTTTCT 311
|||||||||||| |||||||||||||| |||||||||
Sbjct 558 CTGGGCTTCTTCGAGTGTCATGTACGGCATGGTTTCT 594
Score = 104 bits (56), Expect = 3e-21
Identities = 58/59 (98%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 1337 TTGAGGATGTGATTGACACAATCTATGTCTGTTACGCGATTGATAGAGACAAAGGGGAT 1395
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1718 TTGACGATGTGATTGACACAATCTATGTCTGTTACGCGATTGATAGAGACAAAGGGGAT 1776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80873077995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5