BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493651
Length=746
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36100.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 717 0.0
> AT5G36100.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G65090.3);
Has 57 Blast hits to 49 proteins in 15 species: Archae - 0;
Bacteria - 4; Metazoa - 6; Fungi - 0; Plants - 39; Viruses
- 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:14191711-14194054
REVERSE LENGTH=1024
Length=1024
Score = 717 bits (388), Expect = 0.0
Identities = 556/632 (88%), Gaps = 31/632 (5%)
Strand=Plus/Plus
Query 124 ATGAAATCTTCTGTTGTGTTGTCCAAATCTCAACACGTGTCCCTCTGTTTCTCTTGT-TT 182
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||
Sbjct 1 ATGAAATCTTCTGTTGTGCTGTCCAAATCTCAACACGTGTCCCTCTGTCTCTCTCGTCTT 60
Query 183 TCGGAGAAGTTTTGCAACTTCTTTTGATGTTTCTCGTCCGATACCATCTTTGGTTAACCT 242
| |||||| | || |||| | ||| |||||| |||||||||||| |||
Sbjct 61 T-AGAGAAG---T-----TT-TTTT-A-----CTCTTCCGATGGCATCTTTGGTTATCCT 104
Query 243 CGACCGTTTTGATCGCCTAAT---CAGTGTGAT---ATGGAAGAAGGCACAAGAGTGGAT 296
|| | |||||||||||||| ||||||||| |||||||||| |||||||||||||
Sbjct 105 CG--C--TTTGATCGCCTAATCAGCAGTGTGATCGGATGGAAGAAGTCACAAGAGTGGAT 160
Query 297 GGGAAGATGAGTTGGATTTGGAGGAAAGGAGTTAGTGTGGGAAAGAAGGTTCTTGCAGCG 356
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 GGGAAGATGGGTTGGCTTTGGAGGAAAGGAGTTAGTGTGGGAAAGAAGGTTCTTGCAGCA 220
Query 357 TGTTTTCTAGTGTTTTCTGCACCGTTCCTCGTTCCAGCACTCGTAGTTGCCTCTACAATC 416
||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 221 TGTTTTCTAGTGTTTTCTGCACCGTTCCTCGTTCCCGCACTCGTTGTTGCCTCCACAATC 280
Query 417 GCGTTGATTTCGTCACTTCCTTATTGTTTTTTCTTGGCGAGCTATGTTTGTACGGAGAAG 476
|||||||||||||| |||||||||||||||||||||| ||||||||||||||| || |||
Sbjct 281 GCGTTGATTTCGTCCCTTCCTTATTGTTTTTTCTTGGTGAGCTATGTTTGTACTGAAAAG 340
Query 477 TTGATGAGAAAGCTGCTTCCTGCTAATGCGTTTAGTGGAAGAAGTGATCATAAAATGATG 536
||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 341 TTGATGAGAAAACTGCTTCCTGCTAATGCGTTTAGTGGAAGATGTGATCATGAAATGGTG 400
Query 537 CTACTCCCCAACAAGATCGGTGACGGTGATATATATGATGAAGGCATAT-CACGAGTGTC 595
|||| || ||||||||| || |||||||||| |||||||||| | | | | |||||| |
Sbjct 401 CTACACCAGAACAAGATCAGTCACGGTGATATTTATGATGAAGCCGT-TGCGCGAGTGGC 459
Query 596 TATAAGTGAGCC-GATTCTTGTTCATATTGAGGAAGAGAGGACTATTGCAATAGCTTATA 654
|||||||||||| | |||||||||| ||||| ||||||| || || ||||||||||||
Sbjct 460 TATAAGTGAGCCTG-TTCTTGTTCAGATTGAAGAAGAGACAACGATCGCAATAGCTTATC 518
Query 655 GGGAAGATGAGGATATGACAAAAGAGTTAAAGAGCTGGTTAGAGAGTATTACAGATGAGG 714
||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||
Sbjct 519 GGGAAGATGAGGATATGACGAAAGAGTTAAAGAGCTGGTTAGAGAGTATAAGAGACGAGG 578
Query 715 GTAAAAATAATCAATCACTTGATAGAGGAGTC 746
|||||||||||||||||||| |||||||||||
Sbjct 579 GTAAAAATAATCAATCACTTTATAGAGGAGTC 610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36218819987
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5