BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493654
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36120.1 | Symbols: CCB3, YLMG3, atylmg3 | cofactor assembly... 743 0.0
> AT5G36120.1 | Symbols: CCB3, YLMG3, atylmg3 | cofactor assembly,
complex C (B6F) | chr5:14198587-14199243 REVERSE LENGTH=657
Length=657
Score = 743 bits (402), Expect = 0.0
Identities = 584/667 (88%), Gaps = 31/667 (5%)
Strand=Plus/Plus
Query 1 AAAAACAGAGCAGAGTGATTGTGTGATGACGACAGTGACCACCAGCTTCGTCTCTTTCTC 60
||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 18 AAAAACAGAGCAGAGAGA-T-TGTGATGACGACAGTGACCACCAGCTTCGTCTCTTTCTC 75
Query 61 GCCGGC---GCTGCTCCATGC-GAAGAAATCTCGACGATCCTTTCCCAATTTCCGAAATC 116
|||||| | || | | | ||||||||| |||||||||| ||| |||||||| ||||
Sbjct 76 GCCGGCATTGATGAT-TTTTCAGAAGAAATCACGACGATCCTCTCCAAATTTCCGCAATC 134
Query 117 GCTCCACGTCTCTTCCCATAGTTTCAGCATCGTTAAGCCACATCGAAGAAGCAGACACAA 176
| ||||||||||||||||||||||||||| | ||||||||||| |||||||||| |||||
Sbjct 135 GATCCACGTCTCTTCCCATAGTTTCAGCAACATTAAGCCACATAGAAGAAGCAGCCACAA 194
Query 177 CAACAAATCTCTATCCCAACATTCTACAGACGAATTCAATTTCGGATTCGTTGCGTAACA 236
||||||| || | ||||| |||||||||||| |||||||| |||||||||||||
Sbjct 195 CAACAAA--TC--T-----CATTCGACAGACGAATTCCATTTCGGAATCGTTGCGTAACA 245
Query 237 TTCCTTTAGCAGATTTAGATCCAGGAACTGCGAAGCTCGCAATTGGTATCTTAGGTCCAG 296
|| || |||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 246 TTTCTCTAGCAGATTTAGATCCAGGAACAGCGAAGCTCGCTATTGGTATCTTAGGTCCAG 305
Query 297 CTTTATCAGCTTTTGGGTTTCTATTCATCGTGAGAATTGTCATGTCTTGGTACCCGAAAC 356
|||||||||||||||| ||||||||||| ||||||| || |||||||||||||||||||
Sbjct 306 CTTTATCAGCTTTTGGATTTCTATTCATTTTGAGAATCGTTATGTCTTGGTACCCGAAAC 365
Query 357 TTCCTGTTGAGAAGTTTCCTTACGTTTTAGCTTACGCTCCGACAGAACCAATCCTTGTTC 416
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 366 TTCCCGTTGACAAGTTTCCGTACGTTTTAGCTTACGCTCCGACAGAACCAATCCTTGTTC 425
Query 417 AGACCAGGAAAGTGATTCCACCACTTGCAGGTGTTGATGTAACTCCTGTTGTTTGGTTTG 476
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 426 AGACAAGGAAAGTGATTCCACCACTTGCAGGTGTTGATGTTACTCCTGTGGTTTGGTTTG 485
Query 477 GACTTGTGAGTTTCCTTAGTGAGATTTTAGTTGGTCCTCAGGGACTTCTTGTTCTTGTTT 536
| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 486 GGCTTGTGAGTTTCCTTAGTGAGATTTTGGTTGGTCCTCAAGGACTTCTTGTTCTTGTTT 545
Query 537 CTCAACAACAAGTTAGCTAAGATTGAATCAATTTGTGCCTATTTTTGCTGTTTTTCTTAT 596
||||||||||||||| || | | || |||| | | ||||| | | | | ||||
Sbjct 546 CTCAACAACAAGTTAATTA-GCT--AAG-AATT-GAATC-ATTTT-G-T-TCTCA-TTAT 595
Query 597 AGAGAAGTCTACTTGTGGCATATAACGTTATGTTCCTACATTACTCACTCATATGATTGT 656
|||||||||| ||||| ||||| || | ||||||||||||||| | ||||||||||
Sbjct 596 AGAGAAGTCTCCTTGTAGCATACAA--T---GTTCCTACATTACTCGCAAATATGATTGT 650
Query 657 TTGGCTC 663
|||||||
Sbjct 651 TTGGCTC 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32049385786
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5