BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493655
Length=1375
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36160.1 | Symbols: | Tyrosine transaminase family protein ... 1943 0.0
> AT5G36160.1 | Symbols: | Tyrosine transaminase family protein
| chr5:14233110-14235151 REVERSE LENGTH=1436
Length=1436
Score = 1943 bits (1052), Expect = 0.0
Identities = 1199/1272 (94%), Gaps = 2/1272 (0%)
Strand=Plus/Plus
Query 1 aaaaaaaTGGGAGAAAACGGAGCCAAGCGATGGAACTTCGGAGCTAACAAGGTCGTTGAA 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 17 AAAAAAATGGGAGAAAACGGAGCCAAGCGATGGAACTTCGGAGCTAACGAGGTCGTCGAA 76
Query 61 CGATCTAACTCACTTACCGTTCGTGATTATCTTAACACCTTAATCAGTAATCTCGACGGT 120
|||||||||||||||||| |||||||||| |||||||||||||||| | ||||||||||
Sbjct 77 CGATCTAACTCACTTACCATTCGTGATTACCTTAACACCTTAATCAATTGTCTCGACGGT 136
Query 121 GGTGACGTAAGGCCAGTCATCCCCCTTGGACACGGCGATCCTTCGCCGTTCCCGAGCTTT 180
||||| ||||| || |||||||| || || |||||||||||||| |||||||||||||||
Sbjct 137 GGTGATGTAAGACCCGTCATCCCACTAGGTCACGGCGATCCTTCTCCGTTCCCGAGCTTT 196
Query 181 CGTACAGATCAAGCCGCTGTTGACGCCATCTGTGATGCTGTCCGTTCGACCAAGTTTAAC 240
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 197 CGTACCGATCAAGCCGCTGTTGAAGCCATCTGTGATGCTGTCCGTTCGACCAAGTTTAAC 256
Query 241 AACTATTCTGCTTCTTCCGGTGTTCCTGTCGCTAGGAAGGCTGTTGCAGAGTACCTCTCT 300
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 AACTACTCTTCTTCTTCCGGTGTTCCTGTCGCTAGGAAGGCTGTTGCAGAGTACCTCTCT 316
Query 301 CAG-GATCTCTCTTACCAGATATCTCCAAATGATGTTCATATCACAGCTGGTTGTGTGCA 359
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 317 -AGTGATCTCTCTTACCAGATATCACCAAATGATGTTCATATCACAGCTGGTTGTGTGCA 375
Query 360 AGCCATCGAGATTTTGATATCGGCTCTCGCAACTCCTGGAGCCAACATTCTGCTTCCTAG 419
|||||| |||||||||||||| |||||||||| ||||||||| ||||||||||| |||||
Sbjct 376 AGCCATTGAGATTTTGATATCCGCTCTCGCAATTCCTGGAGCTAACATTCTGCTACCTAG 435
Query 420 GCCTACTTACCCGATGTATGATTCCCTAGCGGCTTTCTGCCAACTCGAGGTTCGTTCTTT 479
|||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |||
Sbjct 436 GCCTACTTACCCGATGTACGATTCCCGAGCGGCTTTTTGCCAACTCGAGGTTCGTTATTT 495
Query 480 TGACCTCCTACCAGAAAATGGTTGGGATGTTGATCTGGATGGAGTTGAAGCTCTTGCGGA 539
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 496 CGACCTCCTACCGGAAAATGGTTGGGATGTTGATCTAGATGGAGTTGAAGCTCTTGCGGA 555
Query 540 TGAAAAAACCGTTGCTATAGTTGTTATCAACCCTTGCAATCCATGTGGGAATGTTTTTTC 599
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 556 TGACAAAACCGTTGCTATACTTGTTATCAACCCTTGCAATCCATGTGGGAATGTTTTCTC 615
Query 600 TCGTCAACATCTTCAAAAGATTGCAGAGACGGCTTGCAAGCTTGGAATACTTCTGATTGC 659
||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 616 TCGCCAACATCTTCAAAAGATTGCAGAGACGGCTTGCAAGCTTGGTATACTTGTGATCGC 675
Query 660 AGACGAAGTCTATGACCATTTTGCCTTTGGGGACAAACCATTTGTGTCCATGGCAGAGTT 719
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 676 AGACGAAGTCTATGACCATTTTGCCTTTGGGGATAAACCATTTGTGTCCATGGCAGAGTT 735
Query 720 TGCAGAGATAGTTCCTGTGATTGTGTTAGGTGCCATATCTAAAAGATGGTTTGTTCCTGG 779
||||||| |||| ||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 736 TGCAGAGCTAGTGCCTGTTATTGTCTTAGGTGCTATATCTAAAAGATGGTTTGTTCCTGG 795
Query 780 ATGGAGACTTGGTTGGATGGTGACTCTTGACCCTCATGGCATCATGAAAGATTCTGGGTT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 ATGGAGACTTGGTTGGATGGTGACTCTTGACCCTCATGGCATCATGAAAGATTCTGGGTT 855
Query 840 TGTTCAGACTCTTATCCATGTTGTCAACTTGTCCACGGAGCCTGCAACGTTTATTCAGGG 899
|||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct 856 TGTTCAGACTCTTATCAATGTTGTCAACATGTCGACGGATCCTGCAACGTTTATTCAGGG 915
Query 900 TGCAATGCCTGATATCATTGGGAATACAAAGGAAGAATTCTTCGCATCAAAACTCGAAAT 959
||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||
Sbjct 916 AGCAATGCCTGATATCATTGGGAATACAAAGGAAGAGTTCTTCTCATCAAAACTTGAAAT 975
Query 960 GGTGAGAAAATGTGCAGAGATTTGTTACGAAGAGATTATGAAAATTCCTTGCATCACTTG 1019
||||| ||||||||||||||||||||| || ||| ||||||| |||||||||||||||||
Sbjct 976 GGTGAAAAAATGTGCAGAGATTTGTTATGAGGAGCTTATGAAGATTCCTTGCATCACTTG 1035
Query 1020 CCCCTGCAAACCCGAGGGGTCAATGTTCACGATGGTGAAGTTAAACCTCTCGCTACTCGA 1079
|||||||||||||||||| ||||||||||||||||||||||||||| | || ||||||||
Sbjct 1036 CCCCTGCAAACCCGAGGGCTCAATGTTCACGATGGTGAAGTTAAACTTTTCACTACTCGA 1095
Query 1080 AGATATCAATGATGATGTGGACTTCTGCTCCAAGCTGGCTAAAGAGGAATCTATGATCAT 1139
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 AGATATCAGTGATGATTTGGACTTCTGCTCCAAGCTGGCTAAAGAGGAATCTATGATCAT 1155
Query 1140 TTTACCAGGCCGAGCTGTTGGGCTCAAGAACTGGCTACGTATCACCTTCGCAGTTGAGCT 1199
||||||| | |||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1156 CCTACCAGGTCAAGCTGTTGGGCTTAAGAACTGGCTACGTATCACCTTTGCAGTTGAGCT 1215
Query 1200 TGAGCTTCTCATAGAAGGGTTTTCCAGGCTAAAGAACTTTGCTGAGAGACACTCCAAGAA 1259
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1216 TGAGCTTCTCATAGAAGGGTTTTCCAGGCTAAAGAACTTTACTGAGAGACACTCCAAGAA 1275
Query 1260 GCAGCCATGAGA 1271
|||||||||||
Sbjct 1276 TCAGCCATGAGA 1287
Score = 137 bits (74), Expect = 2e-31
Identities = 96/106 (91%), Gaps = 4/106 (4%)
Strand=Plus/Plus
Query 1272 TCCACAGCCAAAGCAAATTAGATTTTGC-GTAGAGGCT-TATTACATAATACTGTTGGCT 1329
|||||||||||||||||||||||||||| || |||||| | ||||||| || ||||||||
Sbjct 1313 TCCACAGCCAAAGCAAATTAGATTTTGCTGT-GAGGCTATTTTACATACTATTGTTGGCT 1371
Query 1330 TTATAAAACATTTGCACTAAACAATGAATCAGTCATGCCAAGAAGC 1375
|||||||| |||||||| ||||||||||||| | ||||||||||||
Sbjct 1372 TTATAAAATATTTGCAC-AAACAATGAATCACTAATGCCAAGAAGC 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67720535205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5