BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493658
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36170.1 | Symbols: HCF109, ATPRFB | high chlorophyll fluore... 2141 0.0
> AT5G36170.1 | Symbols: HCF109, ATPRFB | high chlorophyll fluorescent
109 | chr5:14235876-14238026 REVERSE LENGTH=1630
Length=1630
Score = 2141 bits (1159), Expect = 0.0
Identities = 1348/1439 (94%), Gaps = 14/1439 (1%)
Strand=Plus/Plus
Query 1 AAGGTCAGAAATTTGAAGAAAAGCTTTGAGCAGAAGA-ATTGTCCATGGAGCTCACCGTT 59
|||||||||||| |||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 16 AAGGTCAGAAATCTGAAGAAAAGCTTTGAGCAGAA-ACA-TGTCCATGGAGCTCACCGTT 73
Query 60 CTCGGACCTCTCGCCGGTCGGAGTTTTGCAATCACCGCAAAACAC-AAACTGCTGCTTCT 118
|||||||| ||||||||||||||||| |||||| ||| ||||| | ||||| ||||||||
Sbjct 74 CTCGGACCCCTCGCCGGTCGGAGTTTCGCAATCGCCGGAAAAC-CTAAACTTCTGCTTCT 132
Query 119 TCGACCAACTAAtctccctcttctccgtctctcactcctgcttcctcctccccaa-ttct 177
||||||||| || ||||||||||||||||||||||||| |||| || || ||||| ||||
Sbjct 133 TCGACCAACAAACCTCCCTCTTCTCCGTCTCTCACTCCCGCTTTCT-CTTCCCAATTTCT 191
Query 178 cttcttcttcttc-ttTT-GTT---TCAGTAGTATTCGCTGCACAGGAGAGTAACCTGAG 232
|||| || || || |||| || || |||||||||||||||||||||||||| ||||
Sbjct 192 CTTCGTCCTC-TCGTTTTAATTCGCCCA-TAGTATTCGCTGCACAGGAGAGTAACTTGAG 249
Query 233 TGTATCGAATGAAAATGAAACCAGTGAGTGGCTAATGCAAGATTTTTATACATTGAGGAA 292
|||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 250 TGTATCCAACGAAAACGAAACCAGTGAGTGGCTGATGCAAGATTTTTATACATTGAGAAA 309
Query 293 AGATGTTGAAATAGCATCAGCTCGTGTTGAAGAGATTAGAGCATCTGCTGGTTTAGAGCA 352
|||||| ||||||||||||||||||||||||||||||||||| |||||| |||| | ||
Sbjct 310 AGATGTAGAAATAGCATCAGCTCGTGTTGAAGAGATTAGAGCTTCTGCTAATTTACAACA 369
Query 353 ATTAGAACAAGAGATTGCTAATTTGGAATCAAAAGCTACTGATACCTCTTTTTGGGATGA 412
| |||||||||||||| | ||| |||||||||||||||||||||| || |||||||||||
Sbjct 370 ACTAGAACAAGAGATTACAAATCTGGAATCAAAAGCTACTGATACATCGTTTTGGGATGA 429
Query 413 TCGTACTAAAGCTCAAGAAACGTTATCGGCTTTAAACGATCTTAAAGATCGGATGCGGTT 472
||||||||||||||||||||| |||||| ||||||| |||||||||||||| ||||||||
Sbjct 430 TCGTACTAAAGCTCAAGAAACTTTATCGTCTTTAAATGATCTTAAAGATCGTATGCGGTT 489
Query 473 GCTTTCTGAGTTCAAAACCATGGTTGAAGATGCGGAAACGATTGTTAAACTAACGGAAGA 532
|| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 490 ACTCTCTGAGTTCAAAACGATGGTTGAAGATGCCGAAACGATTGTTAAACTAACAGAAGA 549
Query 533 GATGGACTCTACTGATGTTAGTTTACTTGAAGAAGCAATGGGAATCATCAAAGAGTTGAA 592
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 550 GATGGACTCTACTGATGTTAGTTTACTTGAAGAAGCCATGGGAATCATTAAAGAGTTGAA 609
Query 593 TAAATCTTTAGATCGATTTGAGCTAACTCAGCTTTTATCAGGACCTTATGACAAAGAAGG 652
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 610 TAAATCTTTAGATAAATTTGAGCTTACTCAGCTTTTATCAGGACCTTATGACAAAGAAGG 669
Query 653 TGCTGTTGTCTACATTACAGCCGGAGCTGGAGGAACAGATGCACAGGATTGGGCCGATAT 712
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 670 TGCTGTTGTTTACATTACAGCTGGAGCTGGAGGAACAGATGCACAGGATTGGGCTGATAT 729
Query 713 GCTGCTTAGGATGTATATGAGATGGGGAGAGAAGCAACGGTACAAGACAAAAGTTGTTGA 772
| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 730 GTTGCTTAGGATGTATATGAGATGGGGAGAGAAGCAGCGGTACAAGACGAAAGTTGTTGA 789
Query 773 AATGTCTAATGGAGAAGAGGCAGGGATTAAGTCAGCGACCCTTGAAATTGAAGGGCGTTA 832
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 790 AATGTCTAATGGAGAAGAGGCAGGGATTAAGTCAGCGACTCTTGAAATTGAAGGGCGTTA 849
Query 833 TGCATATGGTTACATTTCAGGGGAGAAAGGAACTCATAGGATTGTTCGACAATCACCATT 892
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 850 TGCATATGGTTACATTTCAGGGGAGAAAGGAACTCATAGGATTGTCCGACAATCGCCTTT 909
Query 893 CAATTCGAAAGGTCTTCGGCAGACAAGCTTTTCTGGTGTGGAAGTGATGCCGCTTCTGCC 952
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 910 CAATTCGAAAGGTCTTCGCCAGACAAGCTTTTCTGGTGTGGAAGTGATGCCGCTTTTGCC 969
Query 953 TGAGGAAGCAGTGGGAATTGAAATACCAGAGGAAGACCTTGACATTAGTTTCACGAGGGC 1012
||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 970 TGAGGAAGCGGTGGGAATCGAAATACCAGAAGAGGACCTTGACATTAGTTTCACGAGGGC 1029
Query 1013 AGGTGGGAAAGGAGGACAGAATGTCAACAAGGTTGAAACTGCTGTTCGGATTACTCACAT 1072
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 1030 AGGTGGGAAAGGAGGACAGAATGTTAACAAGGTTGAAACTGCTGTACGGATTACTCATAT 1089
Query 1073 CCCTACTGGTGTTGCTGTCCGTTGCACAGAGGAGAGAAGTCAACTGGCGAACAAGACGAG 1132
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 CCCTACTGGTGTTGCTGTTCGTTGCACAGAGGAGAGAAGTCAACTGGCGAACAAGACGAG 1149
Query 1133 AGCTCTGATCAGACTAAAGGCGAAACTGTTGGTGATTGCGGAGGAGCAACGTGCGACTGA 1192
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1150 AGCTCTGATCAGACTAAAAGCGAAACTGATGGTGATTGCGGAGGAGCAACGTGCTACTGA 1209
Query 1193 AATCAAGGAAATAAGAGGAGATGCAGTGAAAGCTGAATGGGGACAGCAGATTAGGAACTA 1252
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1210 AATCAAGGAAATAAGAGGAGATGCAGTGAAAGCTGAATGGGGACAGCAGATCAGGAACTA 1269
Query 1253 CGTGTTTCATCCGTACAAACTGGTTAAGGATGTCCGAACAGGTCATGAAACTTCTGATAT 1312
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1270 CGTGTTTCATCCGTACAAACTCGTTAAGGATGTCCGAACAGGTCATGAAACTTCTGATAT 1329
Query 1313 CACATCTGTGATGGATGGTGACTTGGATCCTTTCATCAAAGCTTACCTTAAGCATAAGTA 1372
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1330 CACATCTGTAATGGATGGTGACTTGGACCCTTTCATCAAAGCTTACCTTAAGCATAAGTA 1389
Query 1373 CACCTTAGCCATGGCTTCTGCTGTAACCAATTAGAATGTTGTTGATAGGCTTGTTCCTT 1431
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1390 CACCTTAGCCATGGCTTCTGCTGTAACCAATTAGAATGCTGAGGATAGGCTTGTTCCTT 1448
Score = 193 bits (104), Expect = 6e-48
Identities = 142/159 (89%), Gaps = 8/159 (5%)
Strand=Plus/Plus
Query 1431 TCCTCCTAGACTGTTCAATTTTACAGCATAATCTTGAATTCCAACAGATAAGCTTAATGT 1490
|||| |||||||||||||||||| ||||||||||||||||||||||| | | |||||
Sbjct 1478 TCCTACTAGACTGTTCAATTTTATAGCATAATCTTGAATTCCAACAG-T---C--AATGT 1531
Query 1491 GAGATTGTGAGTTATGTCTGTTTGTATCTAAATAAAACCGCATTTTGTTCTACACGAAAC 1550
| |||||||||| | |||||||||||||||||||||||||||||||||| || || ||||
Sbjct 1532 GGGATTGTGAGTCAAGTCTGTTTGTATCTAAATAAAACCGCATTTTGTTTTAAACAAAAC 1591
Query 1551 GAAACATAAAACTAATCATAA-CCACTACCAAACCATAT 1588
||||||||||||||| ||||| || ||||||||||||||
Sbjct 1592 GAAACATAAAACTAACCATAAGCC-CTACCAAACCATAT 1629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78413251290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5