BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493666
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36290.1 | Symbols: | Uncharacterized protein family (UPF00... 1705 0.0
> AT5G36290.1 | Symbols: | Uncharacterized protein family (UPF0016)
| chr5:14302739-14305176 FORWARD LENGTH=1224
Length=1224
Score = 1705 bits (923), Expect = 0.0
Identities = 1142/1238 (92%), Gaps = 53/1238 (4%)
Strand=Plus/Plus
Query 1 GTGTTAATTTGATTAATTCCATTATAGCTTCAAAACCGTACAGATCTCTCTCTGTTTCCG 60
|||||||||||||||||||||||| | ||||||||||||||||| |||||||||| |
Sbjct 1 GTGTTAATTTGATTAATTCCATTACATCTTCAAAACCGTACAGA----TCTCTGTTTCGG 56
Query 61 AGCAG---CTTCACACGCTCAAAGCTCACCGATCGATTCTTCCAATGCTCTTCTAAATCA 117
||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 57 AGCAGCTTCTTCACACGCTC-AAGCTCACCGATCGATTCTTCCAATGCTCTTCTAATTCA 115
Query 118 TCTGCAAAACTCTC-GCATCACTCATGGGTTTGATTTCAAACCCTACCCGTTTGGTTCTC 176
|||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 116 TCTGCAAAACTCTCAG-ATCACTCATGGGTTTGATTTCAAACCCTACCCGTTTGATTCTC 174
Query 177 GTCGCCACCACCATCTTCTTCTTCATCTTCGTTTCTTCAATCTCCGCTCAGGATTCGGTG 236
|||| |||||| |||||||| | |||||||||||||||||| ||||||||| ||
Sbjct 175 GTCG---CCACCA---TCTTCTTC--C-TCGTTTCTTCAATCTCCGGTCAGGATTCTGTC 225
Query 237 GTTGAAAACAATGGGAAACAAGAATCTGAAGGATCTGGTAAAGAGCTTGGTCGTCGTGGA 296
||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 GTTGAGAACAATGAGAGACAAGAATCTGAAGGATCTGGTAAAGAGCTTGGTCGTCGTGGA 285
Query 297 ATGATTGGTACTGAACGAATTGGAGTTGATACTGTTGTAGACAATATTGGTGCTCTTGGT 356
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 ATGGTTGGTACTGAACGAATTGGAGTTGATACTGTTGTAGACAATATTGGTGCTCTTGGT 345
Query 357 TTAAATCTTGACCTTGATGCTACTGGTCCTAGTGTCTTTGATGCATTGTTTTCGAGTTTC 416
|| ||||| |||||||||||||||| ||||||||| |||||||| |||||||||||||||
Sbjct 346 TTGAATCTAGACCTTGATGCTACTGCTCCTAGTGTATTTGATGCTTTGTTTTCGAGTTTC 405
Query 417 TCGATGATACTTGTCACCGAGATTGGGGATGAAACGTTTATAATAGCGGCATTGATGGCT 476
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 406 TCGATGATACTTGTCACCGAGATTGGGGATGAAACTTTTATAATAGCGGCATTGATGGCT 465
Query 477 ATGCGACATCCTAAAGCTACTGTTTTATCTGGTGCACTCTCAGCTTTGTTTGTTATGACT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 ATGCGACATCCTAAAGCTACTGTTTTATCTGGTGCACTCTCAGCTTTGTTTGTTATGACT 525
Query 537 ATACTTTCGACTGGACTTGGTAGGATAGTGCCAAACTTGATATCAAGGAAGCACACCAAC 596
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 526 ATACTTTCTACTGGACTTGGTAGGATAGTGCCAAACTTGATATCGAGGAAGCACACCAAT 585
Query 597 AGTGCTGCTACGGTTCTCTATGCATTTTTTGGTTTGCGACTACTCTACATTGCTTGGAGG 656
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 AGTGCTGCTACAGTGCTCTATGCATTTTTTGGTTTGCGACTACTCTACATTGCTTGGAGG 645
Query 657 TCTACTGATTCAAAGTCAAACCAGAAGAAGGAAATGGAGGAAGTTGAAGAGAAGCTCGAG 716
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 646 TCTACTGATTCAAAGTCAAATCAGAAGAAAGAAATGGAGGAAGTTGAAGAGAAGCTCGAG 705
Query 717 TCAGGCCAAGGGAAGACACCCTTCCGTCGCTTATTCTCAAGATTTTGTACCCCAATATTT 776
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 706 TCAGGTCAAGGGAAGACACCCTTCCGTCGTTTATTCTCAAGATTTTGTACCCCAATATTT 765
Query 777 CTGGAGTCCTTCATCTTAACCTTTCTAGCTGAATGGGGCGACCGTAGCCAGATCGCTACA 836
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 766 CTGGAGTCCTTCATCTTAACCTTTCTAGCTGAATGGGGTGACCGTAGCCAGATCGCTACA 825
Query 837 ATAGCTTTGGCGACTCACAAGAACGCCATAGGAGTAGCCATCGGGGCAAGTATTGGACAC 896
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 826 ATAGCTTTGGCGACTCACAAGAACGCCATAGGAGTGGCCATTGGGGCAAGTATTGGACAC 885
Query 897 ACTGTGTGTACTTCACTAGCGGTTGTTGGAGGAAGCATGCTGGCTTCAAGGATCTCGCAA 956
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 886 ACTGTGTGTACTTCACTAGCAGTTGTTGGAGGAAGCATGCTGGCTTCAAGGATCTCGCAA 945
Query 957 CGCACAGTCGCAACTGTTGGAGGCTTACTCTTCCTCGGCTTTTCAGTCTCCTCCTATTTC 1016
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 CGTACGGTCGCAACTGTTGGAGGCTTACTCTTCCTCGGCTTTTCAGTCTCCTCCTATTTC 1005
Query 1017 TATCCTCCACTGTAGTAAATGTGCTTCTTTCAAAAATGGGTGTTAGAGACA-TTGTCTGA 1075
||||||||| ||||||||||||||||||||| ||||||||||||||||||| || ||| |
Sbjct 1006 TATCCTCCATTGTAGTAAATGTGCTTCTTTCGAAAATGGGTGTTAGAGACAATT-TCTAA 1064
Query 1076 GTAAAGTTT---TT---------A----A------GTTTGAT-TTTTGTTTAATATTAAT 1112
||||||||| || | | ||||||| ||||||||||||| |||
Sbjct 1065 GTAAAGTTTCAATTTTTTTTTTGATTTTAATTTAAGTTTGATATTTTGTTTAATATCAAT 1124
Query 1113 GGCCAAA----CCAAA-----GAATCCAACGCCAATGCTTTTACAACTTACTTGCTTGAA 1163
||||||| ||||| |||||||||||| |||||||||||| |||||| ||||||
Sbjct 1125 GGCCAAAATGGCCAAACCAAAGAATCCAACGCCTATGCTTTTACAATTTACTTTCTTGAA 1184
Query 1164 GTGTAACAAATCTAATTAAATAAATTTTTGAACTATCC 1201
|||||||||||||||||||||||| ||||| | |||||
Sbjct 1185 GTGTAACAAATCTAATTAAATAAAATTTTGCAGTATCC 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58985640375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5