BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493672
Length=1869
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15340.1 | Symbols: PPI2 | proton pump interactor 2 | chr3:5... 1711 0.0
AT5G36690.1 | Symbols: | AT5G36690 and AT5G36780 represent ide... 1339 0.0
AT5G36780.1 | Symbols: | AT5G36780 and AT5G36690 represent ide... 1339 0.0
> AT3G15340.1 | Symbols: PPI2 | proton pump interactor 2 | chr3:5159698-5162841
REVERSE LENGTH=2293
Length=2293
Score = 1711 bits (926), Expect = 0.0
Identities = 1309/1488 (88%), Gaps = 49/1488 (3%)
Strand=Plus/Plus
Query 1 ATGGATGGGCAGATTATACTCTGTGATGGCTTCGAGGTGGTTCCTCCGCCCGAGCCGCCC 60
|||| || ||| |||||||||| ||| |||||||||||||||||| || ||||
Sbjct 206 ATGGGTGCGCAAATTATACTCTCTGAAGGCTTCGAGGTGGTTCCT----CC--GCCG--- 256
Query 61 GTGATGAACGAGCTAATTCTCTCCGAAAGCGACCAATCTGTGTC-AGATGGCGA-G-ATC 117
| ||||||||| | | |||| || |||| |||||||||| || || | |||| | |||
Sbjct 257 GAGATGAACGATTTGGTACTCTTCGGAAGCAACCAATCTGTATCAAG-TTGCGATGTATC 315
Query 118 -AC---CACCGA-CGAAGAAGACACTGTTTTTTCCGGTGATAGTTCACCGGAAGTTGGAG 172
|| |||| | |||||| | ||||||||||||||||||||||||||||| || || |
Sbjct 316 AACGGTCACC-ACCGAAGATGGCACTGTTTTTTCCGGTGATAGTTCACCGGGAGGTGCAA 374
Query 173 CTGATGAAGAGGATTGGCATGGAGATAAACCTTTCTCTTTCTACTTTGTTAAGCAACCAG 232
| ||||||||||| | || ||| ||||||||||||||||||||||||||||||||||
Sbjct 375 C---TGAAGAGGATTTCCCTGAAGAGAAACCTTTCTCTTTCTACTTTGTTAAGCAACCAG 431
Query 233 TTTTCGATGATCCCGAGATCAAAGCCAAGATCGATGAAGCTAATGAGGAGATTTTTC-AT 291
|| ||||||||||||||||||||| ||||||||||||||| | | |||||| || |
Sbjct 432 CTTACGATGATCCCGAGATCAAAGCTAAGATCGATGAAGCTGGTCATGAGATTAATCGA- 490
Query 292 TGTAATAATCTCCGAATCGATGTCGT-CAATGCTAAGAAATCCGAAAAGGTTGAGATTTC 350
| |||||| |||||| | |||| | ||||||| || |||||||||||| ||||||||
Sbjct 491 TATAATAAAGACCGAATTGTTGTC-TCCAATGCTCAGGAATCCGAAAAGGCTGAGATTTT 549
Query 351 GTCTTTGTTTGCTCAAATGAAGAGTTTGGTTCCTAAATCGGAACAATATAGAGTGGTTTT 410
|||| |||||| ||||||||||||||||||| ||||||||||| ||||||||||||| |
Sbjct 550 GTCTCTGTTTGGTCAAATGAAGAGTTTGGTTTCTAAATCGGAAGGATATAGAGTGGTTAT 609
Query 411 TGAAGAGAAGAAGAGGGAATTTGATACTCTACTTGAAGCTCTACGGAATCTTCGGTGCTC 470
|||||||||||||| |||||||||| |||||| |||| ||||||||||||| ||||||||
Sbjct 610 TGAAGAGAAGAAGATGGAATTTGATGCTCTACATGAATCTCTACGGAATCTCCGGTGCTC 669
Query 471 TACTAGTGATCAACTTTGTTTTTCAAAGGAGGAACTAGATCATCTTATTTATATAGCTCA 530
|||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 670 TACTAGTGATCAACTTTGTTTTTCGAAGGAGGAGCTCGATCATCTTATTTATATAGCTCA 729
Query 531 TTATCAGATTGAATATGGTAGCATTGGTTTGGAGGAAGACGATTGGGAGCTTAAAGAGAC 590
||||||||||||| |||||||||||||||| |||||||| ||||||| |||||| |||||
Sbjct 730 TTATCAGATTGAACATGGTAGCATTGGTTTTGAGGAAGAAGATTGGGTGCTTAAGGAGAC 789
Query 591 CGAGAAG-CTTGATGGGATCA-TTCTAAGTGAGGATTCTCTTGCGGAGAAAGAAGCTTCT 648
|||||| || |||||||| | |||||||||||||||||||||||||||||||||| ||
Sbjct 790 TGAGAAGGCT-GATGGGAT-AGTTCTAAGTGAGGATTCTCTTGCGGAGAAAGAAGCCTCC 847
Query 649 ATAAACCGTGTCAAGTCTATGGTTGTGGAGTTAAATGAAGTAAAGAATGAGGTCGATGCG 708
|||||||||||||||||||||| |||||| || |||||||||||||| ||| | ||||||
Sbjct 848 ATAAACCGTGTCAAGTCTATGGCTGTGGAATTGAATGAAGTAAAGAAGGAGCTTGATGCG 907
Query 709 ATTACATGGAAGATAAACCACTTGAATGACAAAATGGGGAAGAGTCAGAATAATATTAGG 768
|||||||||||||||||||| |||| ||||||| |||||||||||||||| || | |||
Sbjct 908 ATTACATGGAAGATAAACCATTTGAGTGACAAAGTGGGGAAGAGTCAGAACAACCTCAGG 967
Query 769 GGTTTGGATGTAGAAATGGCACACATTCTTGAG-AAGAGGGACAAATCCTATGAAAGGAT 827
| |||||||||| ||| ||||||||| |||||| || ||||||| |||||||||||||||
Sbjct 968 GTTTTGGATGTAAAAAAGGCACACATACTTGAGGAA-AGGGACAGATCCTATGAAAGGAT 1026
Query 828 TAAGATGCTGAGGATACAACGAGACAAAGGGAATGCTGCATTTTTCCATAGCCTTCTTGT 887
||||||| |||| |||||||||||||||||||| ||||| |||| ||| ||||||| |||
Sbjct 1027 TAAGATGTTGAGAATACAACGAGACAAAGGGAAAGCTGCCTTTTACCAGAGCCTTCCTGT 1086
Query 888 TATGAGTAAAGCTAAAGAATTGGCTGCTTCTGGAAATGTAACAGAGCTTGAAGTGTTTGC 947
|||||| ||||||| |||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 1087 TATGAGGAAAGCTAGAGAATTGGCTGCTTCTGGAAATGTTAGAGATCTTGAAGTGTTTGC 1146
Query 948 CAACTCTGAGGTTGATAGATTCATGACTCATTGGAATGATGACAAGGCTTTTAGGGAAGA 1007
|| ||| |||| |||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1147 CAGCTCCGAGGCTGATAGATTCATGACTCAATGGAATGATGACAAGGCTTTTAGGGATGA 1206
Query 1008 TTACGTAAAAAGAATCTCGTT-TTCACTCGGTGAAAGAGAACTGAACGAAGATGGCCGGA 1066
||||||||||||||| || | |||||| |||||||| | |||||| ||||||| ||||
Sbjct 1207 TTACGTAAAAAGAATATC-TCCTTCACTATGTGAAAGACAGCTGAACCAAGATGGTCGGA 1265
Query 1067 TTAAAGATCCTGAGGTTCAGATCT-TTTGGGAAAAGCAAGTGATGGTTAAGACTATGAAG 1125
||||||||||||| |||||| | | ||||||||||| ||||| ||||||| || |
Sbjct 1266 TTAAAGATCCTGAAGTTCAGGT-TGTTTGGGAAAAGAAAGTGCCGGTTAAGG----GA-G 1319
Query 1126 GGAAGCGAGAAGGTTCA-GAAGACGAATAGAGAAGATTCCAGCTCCAACTTGTCTCAAGA 1184
| |||||||||||| || ||||||||||||||||||||||||||||| ||||||| |
Sbjct 1320 G----CGAGAAGGTTCACGA-GACGAATAGAGAAGATTCCAGCTCCAACTCGTCTCAATA 1374
Query 1185 TGGAAAG-GTAATTACACATaaaagaaaaaaagaaacgaagaaaaagGCGATGGATTTCA 1243
||||| | ||||||||| ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1375 TGGAA-GTGTAATTACAGATAAACGAAAAAAAGAAACGAGGAAAAAGGCGATGGATTTCA 1433
Query 1244 ACATGTCGAGTGCTGAGGAGAGTGATGTTATAGATTTGGAATTCCCGGTGTATgagaaac 1303
||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1434 ACAGGTCGAGTGCTGAGGAGAGTGATGTTACAGATTTGGAATTCTCGGTGTATGAGAAAC 1493
Query 1304 caaagaaggaagaagaagtggtcgatgaagaaactttgaaggagaggaaaagagaagagC 1363
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1494 CAAAGAAGGAAGAAGAAGAGGTCGATGAAGAAACTTTGAAGGAGAGGGAAAGAGAAGAGC 1553
Query 1364 AGTTAGAGAAAGCCCGATTAGCAATGGAAAGGAAGAGGAAGCTGCAAGAGAAAGCTGCTG 1423
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1554 AGTTAGAGAAAGCCCGGTTAGCAATGGAAAGGAAGAGGAAGCTTCAAGAGAAAGCTGCTG 1613
Query 1424 CTAAAGCAGCTATAAGAGCTCAAAAGGAAGCTGAAAAGAAACTCAAGG 1471
||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 CTAAAGCTGCTATAAGAGCTCAAAAGGAAGCTGAAAAGAAACTCAAGG 1661
Score = 346 bits (187), Expect = 5e-94
Identities = 215/228 (94%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 1643 AAGAGAAACACCAAAAGGAGAGATCGTTGTTTCCAAAGCAGAGAAGTTTCAGATACAAAC 1702
|||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1782 AAGAAAAACACCAAAAGGAGAGATCATTGTTTCCAAAGCAGAGAAGTTTCAGGTACAAAC 1841
Query 1703 ACCGCGGAAGAGGAACCGAAGCTCTCCCTAAGGCCATCCTAAACCGTAGAAGGGCTCGA- 1761
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1842 ACCGCGGAAGAGGAACCGAAGCTCTCCCTAAGGCCATCCTAAACCGTAGAAAGGCTC-AT 1900
Query 1762 AAATATTGGGTTTGGGGACTTTCGTCTGCTGCACTTGCTGTTGCGCTCTTCCTTGTGGTT 1821
||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 1901 AAATATTGGGTTTGGGGACTTTCATCTGCTGCACTTGCTGTCGCACTCTTCCTTGTGGTT 1960
Query 1822 TTACTTCTACGGTAAACTTGAAAAAGGAAAGAGGCATTAAAAAGGTTT 1869
|||||||||||||||| |||| ||||||||||| ||||||| ||||||
Sbjct 1961 TTACTTCTACGGTAAA-TTGAGAAAGGAAAGAGACATTAAAGAGGTTT 2007
Score = 76.8 bits (41), Expect = 7e-13
Identities = 57/64 (89%), Gaps = 4/64 (6%)
Strand=Plus/Plus
Query 1591 AAA-GAGAGATCGTTGTTT--AAATGGAGAGAAGTTTCAGGTACAAACACCGCGGAAGAG 1647
||| |||||||| |||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 1795 AAAGGAGAGATCATTGTTTCCAAA-GCAGAGAAGTTTCAGGTACAAACACCGCGGAAGAG 1853
Query 1648 AAAC 1651
|||
Sbjct 1854 GAAC 1857
> AT5G36690.1 | Symbols: | AT5G36690 and AT5G36780 represent identical
copies. The duplication within clone F27C7 is believed
an artifact with only one true copy existing. | chr5:14415185-14417288
REVERSE LENGTH=1731
Length=1731
Score = 1339 bits (725), Expect = 0.0
Identities = 1075/1238 (87%), Gaps = 47/1238 (4%)
Strand=Plus/Plus
Query 1 ATGGATGGGCAGATTATACTCTGTGATGGCTTCGAGGTGGTTCCTCCGCCCGAGCCGCCC 60
||||||| |||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGATGAGCAGATTATATTCTGTGATGGCTTCGAGGTGGTTCCTTCGCCCGA------- 53
Query 61 GTGATGAACGAGCTAATTCTCTCCGAAAGCGACCAATCTGTGTCAGATGGCGAGATCACC 120
||| ||||| |||||||| | |||| ||||||||||| || || || ||||| |||||
Sbjct 54 --GATAAACGATCTAATTCTTTACGAATGCGACCAATCTTTGACAAATAGCGAGGTCACC 111
Query 121 ACCGAC---GAAGAAGACACTGTTTTTTCC---GGTGATAGTTCACCGGAAGTTGGAGCT 174
|||||| |||||||||||| |||||||| |||||||||||| ||| | ||| |||
Sbjct 112 ACCGACGAAGAAGAAGACACTATTTTTTCCGGTGGTGATAGTTCATCGGGACTTGCAGC- 170
Query 175 GATGAAGAGGATT-GGCATGGAGATAAACCTTTCTCTTTCTACTTTGTTAAGCAACCAGT 233
||||||||||| | | ||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct 171 --TGAAGAGGATTCGTC-TGGAGATAAACCTCTCTCTTTCTACATTGTTAAGCAACCTGT 227
Query 234 TTTCGATGATCCCGAGATCAAAGCCAAGATCGATGAAGCTAATGAGGAGATTTTTCATTG 293
|| |||| |||||||||| |||||||||||||||||||||||| |||||||||||| |||
Sbjct 228 TTACGATAATCCCGAGATTAAAGCCAAGATCGATGAAGCTAATCAGGAGATTTTTCGTTG 287
Query 294 TAAT-AATCTCCGAATCGATGTCGTCAATGCTAAGAAATCCGAAAAGGTTGAGATTTCGT 352
|||| || ||||||||| ||||| | | || |||||||||||| || |||| ||||||
Sbjct 288 TAATGAA-CTCCGAATCAATGTCTTGAGCGCCAAGAAATCCGAACTGGCTGAGGTTTCGT 346
Query 353 CTTTGTTTGCTCAAATGAAGAGTTTGGTTCCTAAATCGGAACAATATAGAGTGGTTTTTG 412
|||||| | |||||||| |||||||||||||| |||| ||| ||||||| ||||| |||
Sbjct 347 CTTTGTATACTCAAATGGAGAGTTTGGTTCCTCAATCTGAAGGATATAGAATGGTTATTG 406
Query 413 AAGAGAAGAAGAGGGAATTTGATACTCTACTTGAAGCTCTACGGAATCTTCGGTGCTCTA 472
|||||||||||| ||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 407 AAGAGAAGAAGAAGGAGTTTGATACTCTACTTGAAGCTCTACGGAATCTCCGGTGCACTA 466
Query 473 CTAGTGATCAACTTTGTTTTTCAAAGGAGGAACTAGATCATCTTATTTATATAGCTCATT 532
|||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||| |
Sbjct 467 CTAGTGATCAACTTTGTTTTACAAAGGAGGAACTTGATCATCTTAGTTATATAGCTCAGT 526
Query 533 ATCAGATTGAATATGGTAGCATTGGTTTGGAGGAAGACGATTGGGA-GCTTAAAGAGACC 591
||||||||||||||||||||||||||||||||||||| |||| ||| |||||| |||||
Sbjct 527 ATCAGATTGAATATGGTAGCATTGGTTTGGAGGAAGAAGATT-GGATGCTTAAGGAGACT 585
Query 592 GAGAAGCTTGATGGGATCATTCTAAGTGAGGATTCTCTTGCGGAGAAAGAAGCTTCTATA 651
||||||| ||||||||||||||| | | | | |||||||||||||| |||
Sbjct 586 GAGAAGCCTGATGGGATCATTCT-A---A-G-------T---GAGAAAGAAGCTTCCATA 630
Query 652 AACCGTGTCAAGTCTATGG-TTGTGGAGTTAAATGAAGTAAAGAATGAGGTCGATGCGAT 710
|| |||||||||||||||| || |||| || |||||||||||||||||| | ||||||||
Sbjct 631 AATCGTGTCAAGTCTATGGCTT-TGGAATTGAATGAAGTAAAGAATGAGCTTGATGCGAT 689
Query 711 TACATGGAAGATAAACCACTTGAA-TGACAAAATGGGGAAGAGTCAGAATAATATTAGGG 769
||| |||||||||||| || | || ||||||| || |||||||||| || || |||||||
Sbjct 690 TACTTGGAAGATAAACGACCT-AAGTGACAAATTGTGGAAGAGTCAAAACAACATTAGGG 748
Query 770 GTTTGGATGTAGAAATGGCACACATTCTTGAGAAGAGGGACAAATCCTATGAAAGGATTA 829
||||||| | |||| ||||||||| |||||||||||||| | || |||| ||||||||
Sbjct 749 TTTTGGATTTGGAAAAGGCACACATACTTGAGAAGAGGGATAGATTTTATGCAAGGATTA 808
Query 830 AGATGCTGAGGATACAACGAGACAAAGGGAATGCTGCATTTTTCCATAGCC-TTCTTGTT 888
||||| |||||||||||||||||||||| ||||||||||||||||| |||| ||| ||||
Sbjct 809 AGATGTTGAGGATACAACGAGACAAAGGAAATGCTGCATTTTTCCAGAGCCTTTC-TGTT 867
Query 889 ATGAGTAAAGCTAAAGAATTGGCTGCTTCTGGAAATGTAACAGAGCTTGAAGTGTTTGCC 948
||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 868 ATGTGTAAAGCTAAAGAATTGGCTGCTTCTGGAAATGTTAGAGAGCTTGAAGTGTTTGCT 927
Query 949 AACTCTGAGGTTGATAGATTCATGACTCATTGGAATGATGACAAGGCTTTTAGGGAAGAT 1008
| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 928 AGCTCTGAGGTTGATAGATTCATGACTCTTTGGAATGATGATAAGGCTTTTAGGGAAGAT 987
Query 1009 TACGTAAAAAGAATCTCGTTTTCACTCGGTGAAAGAGAACTGAACGAAGATGGCCGGATT 1068
||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 988 TACGTAAGAAGAATCTCGCATTCACTATGTGAAAGAGAACTGAACGAAGATGGCCGGATA 1047
Query 1069 AAAGATCCTGAGGTTCAGATCTTTTGGGAAAAGCAAGTGATGGTTAAGACTATGAAGGGA 1128
|||||| |||| ||||||| |||||||||||| ||||| |||||||||||| ||| ||
Sbjct 1048 AAAGATGCTGACCTTCAGATTTTTTGGGAAAAGAAAGTGCCGGTTAAGACTATAAAGCGA 1107
Query 1129 AGCGAGAAGGTTCAGAAGACGAATAGAGAAGATTCCAGCTCCAACT-TGTCTCAAGATGG 1187
|||||||||||||| |||| ||||||||||||||| ||||| |||| | ||| |||||||
Sbjct 1108 AGCGAGAAGGTTCATAAGATGAATAGAGAAGATTCAAGCTCTAACTCT-TCTGAAGATGG 1166
Query 1188 AAAGGTAATTACACATaaaagaaaaaaagaaacgaaga 1225
||| ||||||||| ||||| |||| |||||||||||||
Sbjct 1167 AAATGTAATTACAGATAAACGAAAGAAAGAAACGAAGA 1204
Score = 392 bits (212), Expect = 6e-108
Identities = 278/308 (90%), Gaps = 11/308 (4%)
Strand=Plus/Plus
Query 1291 GTGTATgagaaaccaaagaaggaagaagaagtggtcgatgaagaaactttgaaggagagg 1350
||||||||||||||||||||| ||||||||| | ||||||||||| ||||||||||||||
Sbjct 1216 GTGTATGAGAAACCAAAGAAGAAAGAAGAAGAGATCGATGAAGAAGCTTTGAAGGAGAGG 1275
Query 1351 aaaagagaagagCAGTTAGAGAAAGCCCGATTAGCAATGGAAAGGAAGAGGAAGCTGCAA 1410
|||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct 1276 AAAAGAGAAGAGCAGTTAGAGAAAGCTCGGTTAGTGATGGAAAGGAAGAGGAAGCTGCAA 1335
Query 1411 GAGAAAGCTGCTGCTAAAGCAGCTATAAGAGCTCAAAAGGAAGCTGAAAAGAAACTCAAG 1470
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1336 GAGAAAGCTGCTGCTAAAGCTGCTATAAGAGCTCAAAAGGAAGCTGAAAAGAAACTCAAG 1395
Query 1471 GCAATTATATTATCTGGTTTCCATTTTTTCGATGAGTGTGAGAGAAAGGCGAAGAAGAAA 1530
||||||||||||||| ||| |||||||||| |||||||||||| ||||||||||||||||
Sbjct 1396 GCAATTATATTATCTTGTTCCCATTTTTTCAATGAGTGTGAGAAAAAGGCGAAGAAGAAA 1455
Query 1531 GCTGCTTCAAAATC-AGA-C-C----A-A-TCACGAG-AAGTAATCAATGACGAAAAGGT 1580
|||||| |||| || | | | | | ||| || ||||||||||||| ||||||||
Sbjct 1456 GCTGCTGCAAATTCTACTTCTCCTTCAGAATCA-GACCAAGTAATCAATGATGAAAAGGT 1514
Query 1581 TAGGACAT 1588
||||||||
Sbjct 1515 TAGGACAT 1522
Score = 281 bits (152), Expect = 1e-74
Identities = 181/195 (93%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 1643 AAGAGAAACACCAAAAGGAGAGATCGTTGTTTCCAAAGCAGAGAAGTTTCAGATACAAAC 1702
|||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||
Sbjct 1538 AAGAGAAACACCAAAAGGAGAGATTGTTGTTTCCAAAGCAGAGAAGTTTTAGGTACAAAC 1597
Query 1703 ACCGCGGAAGAGGAACCGAAGCTCTCCCTAAGGCCATCCTAAACCGTAGAAGGGCTCGAA 1762
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1598 ACCGCGGAAGCGGAACCGAAGCTCTCCCTAAGGCCATCCTAAACCGTAGAAAGGCTCGTC 1657
Query 1763 AATATTGGGTTTGGGGACTTTCGTCTGCTGCACTTGCTGT-TGCGCTCTTCCTTGTGGTT 1821
||||||||||||||||||||| |||||||||||||| || | ||||| |||||||||||
Sbjct 1658 GATATTGGGTTTGGGGACTTTCTTCTGCTGCACTTGCGGTCT-CGCTCGTCCTTGTGGTT 1716
Query 1822 TTACTTCTACGGTAA 1836
||||||||| |||||
Sbjct 1717 TTACTTCTAAGGTAA 1731
> AT5G36780.1 | Symbols: | AT5G36780 and AT5G36690 represent identical
copies. The duplication within clone F27C7 is believed
an artifact with only one true copy existing. | chr5:14474485-14476588
REVERSE LENGTH=1731
Length=1731
Score = 1339 bits (725), Expect = 0.0
Identities = 1075/1238 (87%), Gaps = 47/1238 (4%)
Strand=Plus/Plus
Query 1 ATGGATGGGCAGATTATACTCTGTGATGGCTTCGAGGTGGTTCCTCCGCCCGAGCCGCCC 60
||||||| |||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGATGAGCAGATTATATTCTGTGATGGCTTCGAGGTGGTTCCTTCGCCCGA------- 53
Query 61 GTGATGAACGAGCTAATTCTCTCCGAAAGCGACCAATCTGTGTCAGATGGCGAGATCACC 120
||| ||||| |||||||| | |||| ||||||||||| || || || ||||| |||||
Sbjct 54 --GATAAACGATCTAATTCTTTACGAATGCGACCAATCTTTGACAAATAGCGAGGTCACC 111
Query 121 ACCGAC---GAAGAAGACACTGTTTTTTCC---GGTGATAGTTCACCGGAAGTTGGAGCT 174
|||||| |||||||||||| |||||||| |||||||||||| ||| | ||| |||
Sbjct 112 ACCGACGAAGAAGAAGACACTATTTTTTCCGGTGGTGATAGTTCATCGGGACTTGCAGC- 170
Query 175 GATGAAGAGGATT-GGCATGGAGATAAACCTTTCTCTTTCTACTTTGTTAAGCAACCAGT 233
||||||||||| | | ||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct 171 --TGAAGAGGATTCGTC-TGGAGATAAACCTCTCTCTTTCTACATTGTTAAGCAACCTGT 227
Query 234 TTTCGATGATCCCGAGATCAAAGCCAAGATCGATGAAGCTAATGAGGAGATTTTTCATTG 293
|| |||| |||||||||| |||||||||||||||||||||||| |||||||||||| |||
Sbjct 228 TTACGATAATCCCGAGATTAAAGCCAAGATCGATGAAGCTAATCAGGAGATTTTTCGTTG 287
Query 294 TAAT-AATCTCCGAATCGATGTCGTCAATGCTAAGAAATCCGAAAAGGTTGAGATTTCGT 352
|||| || ||||||||| ||||| | | || |||||||||||| || |||| ||||||
Sbjct 288 TAATGAA-CTCCGAATCAATGTCTTGAGCGCCAAGAAATCCGAACTGGCTGAGGTTTCGT 346
Query 353 CTTTGTTTGCTCAAATGAAGAGTTTGGTTCCTAAATCGGAACAATATAGAGTGGTTTTTG 412
|||||| | |||||||| |||||||||||||| |||| ||| ||||||| ||||| |||
Sbjct 347 CTTTGTATACTCAAATGGAGAGTTTGGTTCCTCAATCTGAAGGATATAGAATGGTTATTG 406
Query 413 AAGAGAAGAAGAGGGAATTTGATACTCTACTTGAAGCTCTACGGAATCTTCGGTGCTCTA 472
|||||||||||| ||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 407 AAGAGAAGAAGAAGGAGTTTGATACTCTACTTGAAGCTCTACGGAATCTCCGGTGCACTA 466
Query 473 CTAGTGATCAACTTTGTTTTTCAAAGGAGGAACTAGATCATCTTATTTATATAGCTCATT 532
|||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||| |
Sbjct 467 CTAGTGATCAACTTTGTTTTACAAAGGAGGAACTTGATCATCTTAGTTATATAGCTCAGT 526
Query 533 ATCAGATTGAATATGGTAGCATTGGTTTGGAGGAAGACGATTGGGA-GCTTAAAGAGACC 591
||||||||||||||||||||||||||||||||||||| |||| ||| |||||| |||||
Sbjct 527 ATCAGATTGAATATGGTAGCATTGGTTTGGAGGAAGAAGATT-GGATGCTTAAGGAGACT 585
Query 592 GAGAAGCTTGATGGGATCATTCTAAGTGAGGATTCTCTTGCGGAGAAAGAAGCTTCTATA 651
||||||| ||||||||||||||| | | | | |||||||||||||| |||
Sbjct 586 GAGAAGCCTGATGGGATCATTCT-A---A-G-------T---GAGAAAGAAGCTTCCATA 630
Query 652 AACCGTGTCAAGTCTATGG-TTGTGGAGTTAAATGAAGTAAAGAATGAGGTCGATGCGAT 710
|| |||||||||||||||| || |||| || |||||||||||||||||| | ||||||||
Sbjct 631 AATCGTGTCAAGTCTATGGCTT-TGGAATTGAATGAAGTAAAGAATGAGCTTGATGCGAT 689
Query 711 TACATGGAAGATAAACCACTTGAA-TGACAAAATGGGGAAGAGTCAGAATAATATTAGGG 769
||| |||||||||||| || | || ||||||| || |||||||||| || || |||||||
Sbjct 690 TACTTGGAAGATAAACGACCT-AAGTGACAAATTGTGGAAGAGTCAAAACAACATTAGGG 748
Query 770 GTTTGGATGTAGAAATGGCACACATTCTTGAGAAGAGGGACAAATCCTATGAAAGGATTA 829
||||||| | |||| ||||||||| |||||||||||||| | || |||| ||||||||
Sbjct 749 TTTTGGATTTGGAAAAGGCACACATACTTGAGAAGAGGGATAGATTTTATGCAAGGATTA 808
Query 830 AGATGCTGAGGATACAACGAGACAAAGGGAATGCTGCATTTTTCCATAGCC-TTCTTGTT 888
||||| |||||||||||||||||||||| ||||||||||||||||| |||| ||| ||||
Sbjct 809 AGATGTTGAGGATACAACGAGACAAAGGAAATGCTGCATTTTTCCAGAGCCTTTC-TGTT 867
Query 889 ATGAGTAAAGCTAAAGAATTGGCTGCTTCTGGAAATGTAACAGAGCTTGAAGTGTTTGCC 948
||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 868 ATGTGTAAAGCTAAAGAATTGGCTGCTTCTGGAAATGTTAGAGAGCTTGAAGTGTTTGCT 927
Query 949 AACTCTGAGGTTGATAGATTCATGACTCATTGGAATGATGACAAGGCTTTTAGGGAAGAT 1008
| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 928 AGCTCTGAGGTTGATAGATTCATGACTCTTTGGAATGATGATAAGGCTTTTAGGGAAGAT 987
Query 1009 TACGTAAAAAGAATCTCGTTTTCACTCGGTGAAAGAGAACTGAACGAAGATGGCCGGATT 1068
||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 988 TACGTAAGAAGAATCTCGCATTCACTATGTGAAAGAGAACTGAACGAAGATGGCCGGATA 1047
Query 1069 AAAGATCCTGAGGTTCAGATCTTTTGGGAAAAGCAAGTGATGGTTAAGACTATGAAGGGA 1128
|||||| |||| ||||||| |||||||||||| ||||| |||||||||||| ||| ||
Sbjct 1048 AAAGATGCTGACCTTCAGATTTTTTGGGAAAAGAAAGTGCCGGTTAAGACTATAAAGCGA 1107
Query 1129 AGCGAGAAGGTTCAGAAGACGAATAGAGAAGATTCCAGCTCCAACT-TGTCTCAAGATGG 1187
|||||||||||||| |||| ||||||||||||||| ||||| |||| | ||| |||||||
Sbjct 1108 AGCGAGAAGGTTCATAAGATGAATAGAGAAGATTCAAGCTCTAACTCT-TCTGAAGATGG 1166
Query 1188 AAAGGTAATTACACATaaaagaaaaaaagaaacgaaga 1225
||| ||||||||| ||||| |||| |||||||||||||
Sbjct 1167 AAATGTAATTACAGATAAACGAAAGAAAGAAACGAAGA 1204
Score = 392 bits (212), Expect = 6e-108
Identities = 278/308 (90%), Gaps = 11/308 (4%)
Strand=Plus/Plus
Query 1291 GTGTATgagaaaccaaagaaggaagaagaagtggtcgatgaagaaactttgaaggagagg 1350
||||||||||||||||||||| ||||||||| | ||||||||||| ||||||||||||||
Sbjct 1216 GTGTATGAGAAACCAAAGAAGAAAGAAGAAGAGATCGATGAAGAAGCTTTGAAGGAGAGG 1275
Query 1351 aaaagagaagagCAGTTAGAGAAAGCCCGATTAGCAATGGAAAGGAAGAGGAAGCTGCAA 1410
|||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct 1276 AAAAGAGAAGAGCAGTTAGAGAAAGCTCGGTTAGTGATGGAAAGGAAGAGGAAGCTGCAA 1335
Query 1411 GAGAAAGCTGCTGCTAAAGCAGCTATAAGAGCTCAAAAGGAAGCTGAAAAGAAACTCAAG 1470
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1336 GAGAAAGCTGCTGCTAAAGCTGCTATAAGAGCTCAAAAGGAAGCTGAAAAGAAACTCAAG 1395
Query 1471 GCAATTATATTATCTGGTTTCCATTTTTTCGATGAGTGTGAGAGAAAGGCGAAGAAGAAA 1530
||||||||||||||| ||| |||||||||| |||||||||||| ||||||||||||||||
Sbjct 1396 GCAATTATATTATCTTGTTCCCATTTTTTCAATGAGTGTGAGAAAAAGGCGAAGAAGAAA 1455
Query 1531 GCTGCTTCAAAATC-AGA-C-C----A-A-TCACGAG-AAGTAATCAATGACGAAAAGGT 1580
|||||| |||| || | | | | | ||| || ||||||||||||| ||||||||
Sbjct 1456 GCTGCTGCAAATTCTACTTCTCCTTCAGAATCA-GACCAAGTAATCAATGATGAAAAGGT 1514
Query 1581 TAGGACAT 1588
||||||||
Sbjct 1515 TAGGACAT 1522
Score = 281 bits (152), Expect = 1e-74
Identities = 181/195 (93%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 1643 AAGAGAAACACCAAAAGGAGAGATCGTTGTTTCCAAAGCAGAGAAGTTTCAGATACAAAC 1702
|||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||
Sbjct 1538 AAGAGAAACACCAAAAGGAGAGATTGTTGTTTCCAAAGCAGAGAAGTTTTAGGTACAAAC 1597
Query 1703 ACCGCGGAAGAGGAACCGAAGCTCTCCCTAAGGCCATCCTAAACCGTAGAAGGGCTCGAA 1762
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1598 ACCGCGGAAGCGGAACCGAAGCTCTCCCTAAGGCCATCCTAAACCGTAGAAAGGCTCGTC 1657
Query 1763 AATATTGGGTTTGGGGACTTTCGTCTGCTGCACTTGCTGT-TGCGCTCTTCCTTGTGGTT 1821
||||||||||||||||||||| |||||||||||||| || | ||||| |||||||||||
Sbjct 1658 GATATTGGGTTTGGGGACTTTCTTCTGCTGCACTTGCGGTCT-CGCTCGTCCTTGTGGTT 1716
Query 1822 TTACTTCTACGGTAA 1836
||||||||| |||||
Sbjct 1717 TTACTTCTAAGGTAA 1731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92519604435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5