BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493685
Length=1731
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36890.1 | Symbols: BGLU42 | beta glucosidase 42 | chr5:1454... 2702 0.0
> AT5G36890.1 | Symbols: BGLU42 | beta glucosidase 42 | chr5:14542026-14546230
REVERSE LENGTH=1751
Length=1751
Score = 2702 bits (1463), Expect = 0.0
Identities = 1661/1752 (95%), Gaps = 32/1752 (2%)
Strand=Plus/Plus
Query 1 TTCTATTAAAATTGGTAGACCAAACCATACGGGCTGATTTAGGCCTTCTCTTCCG--A-- 56
|||||||||||||||||||||||| ||| ||||||||||| |||||||| ||| | |
Sbjct 10 TTCTATTAAAATTGGTAGACCAAAACATTCGGGCTGATTTTGGCCTTCT-TTCTGATATT 68
Query 57 TATTTATCTCCGCAACTTTTG---C---A---T-TCT-T-GC--GTATCAGATTCCATAC 102
|||||||||||| |||||||| | | | ||| | | |||||||||||| ||
Sbjct 69 TATTTATCTCCGAAACTTTTGCTTCTTAAGTCTGTCTCTCTCTTCTATCAGATTCCACAC 128
Query 103 TAATCGGAAAAAATGGCACAGAAGCTTAACTTGAC-TAATCTCGCCGTCTCTCCGGTCAC 161
||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct 129 TAATCGGAAAAAATGGCACAGAAGCTTAACTTG-CTTAATCTCGCCGTCCCTCCGGTCAC 187
Query 162 CCACCGCTCTAACTTCCCTTCCACTTTCACCTTCGGCGTTGCCACTTCCGCTTACCAGAT 221
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 188 CCACCGCTCTAACTTCCCTTCCACCTTCACCTTCGGCGTCGCCACTTCCGCTTACCAGAT 247
Query 222 TGAAGGAGGTTGGAATGAAGGTAAAAAAGGACCAAGTATATGGGATAAGTTCACTCATCT 281
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 248 TGAAGGAGGTTGGAATGAAGGTAAAAAGGGACCAAGTATATGGGATAAGTTCACTCATAT 307
Query 282 TGAAGGGAAGATTCTTGATGGAAGTAACGGCGATGTTGCTGTGGATCATTACCATAGATA 341
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 CGAAGGGAAGATTCTTGATGGAAGTAACGGCGATGTTGCTGTGGATCATTACCATAGATA 367
Query 342 CAAGGAAGATGTTGAACTTATAGGACAATTAGGATTTGGTGCTTACAGATTTTCTATATC 401
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 368 CAAGGAAGATGTTGATCTTATAGGACAATTAGGATTCGGTGCTTACAGATTTTCTATATC 427
Query 402 TTGGTCTCGCATTTTCCCTGATGGCTTGGGAACTGAAGTCAATGAAGAAGGCATTGCTTT 461
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 428 TTGGTCTCGAATTTTCCCTGATGGCCTGGGAACTGAAGTCAATGAAGAAGGCATTGCTTT 487
Query 462 CTACAACAATCTTATCAATACACTTCTTGAAAAAGGTATTCAGCCGTATGTAACTCTGTA 521
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 CTACAACGATCTTATTAATACACTTCTTGAAAAAGGTATTCAGCCGTATGTAACTCTGTA 547
Query 522 CCATTGGGATCTCCCATCCCATCTCCAGGACGCAATCGGAGGTTGGACAAATAGGAAAAT 581
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 548 CCATTGGGATCTCCCATCACATCTCCAGGAAGCAATCGGAGGTTGGACAAATAGGAAAAT 607
Query 582 TGTCGATTATTTTGGCCTCTATGCAGATGCTTGTTTTGCCAATTTTGGTGATAGAGTGAA 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 TGTCGATTATTTTGGCCTCTATGCAGATGCTTGTTTTGCCAATTTTGGTGATAGAGTGAA 667
Query 642 GCACTGGATCACATTAAATGAACCTCTTCAGACCTCGGTGAATGGACACTGTATTGGTAT 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 GCACTGGATCACATTAAATGAACCTCTTCAGACCTCGGTGAATGGACACTGTATTGGTAT 727
Query 702 ATTTGCACCTGGAAGAAATGAGAAGCCCTTGATCGAACCATATTTGGTCTCGCATCATCA 761
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 728 ATTTGCACCTGGAAGAAATGAGAAGCCCTTGATCGAACCATATTTGGTCTCACATCATCA 787
Query 762 GGTTTTGGCCCATGCAACTGCTGTTTCCATATATAGAAGCAAGTACAAGGAAAGTCAAGG 821
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 788 GGTTCTGGCCCATGCAACTGCTGTATCCATATATAGAAGCAAGTACAAGGAAAGTCAAGG 847
Query 822 TGGACAAATCGGTTTGTCAGTTGATTGTGAGTGGGCGGAGCCAAACTCAGAGAAACCGGA 881
|||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||
Sbjct 848 TGGACAAATCGGTTTGTCAGTTGATTGTGAATGGGCAGAGCCAAACTCTGAGAAACCAGA 907
Query 882 AGACAAGGTTGCTGCGGATAGGCGAATTGACTTTCAACTTGGATGGTTCTTGGATCCTTT 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 AGACAAGGTTGCTGCGGATAGGCGAATTGACTTTCAACTTGGATGGTTCTTGGATCCTTT 967
Query 942 GTTTTTTGGAGACTATCCTGCAAGTATGCGCCAGAAACTTGGAGACAATCTTCCTAGATT 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 GTTTTTTGGAGACTATCCTGCAAGTATGCGCCAGAAACTTGGAGACAATCTTCCTAGATT 1027
Query 1002 TACTCCGGAAGAAAAGGAGTTTATGCTTCAAAACTCATGGGACTTCCTTGGCCTGAACCA 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 TACTCCGGAAGAAAAGGAGTTTATGCTTCAAAACTCATGGGACTTCCTTGGCCTGAACCA 1087
Query 1062 CTATAC-TACGAGGTTGATTTCTCATGTCTCAAATAAAGAAGCTGAGAGTAACTTTTACC 1120
|||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1088 CTATACGT-CGAGGTTGATTTCTCATGTCTCAAACAAAGAAGCTGAGAGTAACTTTTACC 1146
Query 1121 AAGCACAAGAACTGGAGAGGATTGTTGAACAGGAAAATGGAGAGCTGATAGGCGAAAGGG 1180
||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1147 AAGCACAAGAATTGGAGAGGATTGTTGAACTGGAAAATGGAGATTTGATAGGCGAAAGGG 1206
Query 1181 CTGCTTCGGATTGGCTTTATGTTGTGCCTTGGGGAATCCGGAAGACTTTGAATTACATCA 1240
||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| |
Sbjct 1207 CTGCTTCGGATTGGCTTTATGCTGTGCCTTGGGGAATCCGAAAGACATTGAATTACATGA 1266
Query 1241 GCAAAAAATATAACCACCCTCCAATCTTTATTACTGAAAATGGTATGGATGACGAAGATG 1300
||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 1267 GCAAAAAATATAACCACCCTCCAATATTTATCACTGAAAATGGTATGGATGATGAAGATG 1326
Query 1301 ATGGATCTGCCTCTATCCATGATATGCTTGACGATAAGCGTAGAGTTGCCTATTTCAAGA 1360
||||||| |||||||| |||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1327 ATGGATCGGCCTCTATTCATGATATGCTTGACGATAAACGTAGAGTTGACTATTTCAAGA 1386
Query 1361 GTTACCTTGCCAATGTCTCTCAGGCTATTGAAGACGGAGTGGACATAAAGGGATACTTTG 1420
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 GTTACCTTGCCAACGTCTCCCAGGCTATTGAAGACGGAGTGGACATAAAGGGATACTTTG 1446
Query 1421 CATGGTCGTTGCTGGACAACTTCGAGTGGGCGCAAGGGTACACCAAGAGATTTGGTTTGG 1480
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 CGTGGTCGCTGCTGGACAACTTCGAGTGGGCGCAAGGGTACACCAAGAGATTTGGTTTGG 1506
Query 1481 TATATGTAGACTACAAGAACGGTTTAACCCGTCATCCAAAATCATCTGCGTATTGGTTCA 1540
|||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 1507 TATATGTAGACTACAAGAACGGTTTAACCCGTCACCCAAAATCATCTGCTTACTGGTTCA 1566
Query 1541 tgaaatttctgaaaggtgatgaagaaaccaaaggtaagaaggaatgaaaaa-ggataaaa 1599
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||
Sbjct 1567 TGAAATTTCTGAAAGGTGATGAAGAAAACAAAGGTAAGAAGGAATGAAAAAAGGATCAAA 1626
Query 1600 gaaaactaaagCTACTACAACATTTTACATGAAATGTGTTGTGATGTTATAACTTTTGTA 1659
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1627 GAAAACTAAAGCTACTACAGCATTTTACATGAAATGTGTTGTGATGTTATAATTTTTGTA 1686
Query 1660 CCAAATAGATCAATTAGTTGAATAGAGCCATGACAAACCAAATCCCTTGGGCTGCTCTTT 1719
||||||||||||||||||| |||| | | | | | ||||||| |||||| ||||||||
Sbjct 1687 CCAAATAGATCAATTAGTTCAATA-A-C-A--A-A--CCAAATCACTTGGGGTGCTCTTT 1738
Query 1720 GGTTTTAAACTC 1731
||||||||||||
Sbjct 1739 GGTTTTAAACTC 1750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85591929225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5