BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493687
Length=1911
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36950.1 | Symbols: DegP10 | DegP protease 10 | chr5:1459498... 3042 0.0
AT1G65630.1 | Symbols: DegP3 | DegP protease 3 | chr1:24406542-... 553 3e-156
> AT5G36950.1 | Symbols: DegP10 | DegP protease 10 | chr5:14594981-14598371
FORWARD LENGTH=1927
Length=1927
Score = 3042 bits (1647), Expect = 0.0
Identities = 1832/1920 (95%), Gaps = 17/1920 (1%)
Strand=Plus/Plus
Query 1 CGGAAAAAT-ATGCTGCTCCGGTCATTTCGCACCGTCGAGCTTCTCCGCCGAATCTCCAC 59
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 CGG-AAAATAATGCTGCTCCGGTCATTTCGCACCGTCGAGCTTCTCCGCCGAATCTCCAC 61
Query 60 TTCTTCATCAGTCTCTGGATATCGCACTTCTTCTTCA-TTCTTACAACGTTGCAATGGAT 118
||| | ||||||||||||||||| |||||| ||||| || ||||||||||||||||| |
Sbjct 62 TTC-T--TCAGTCTCTGGATATCGAACTTCTCCTTCACTT-TTACAACGTTGCAATGGCT 117
Query 119 TTCAAAGCTATTTACCACACAGAGT---AACAACAGAGAGTCCTTTCCCTTCTCATATCT 175
| ||||||||||||||||||||||| |||||||||||||||||||||||| || ||||
Sbjct 118 TCCAAAGCTATTTACCACACAGAGTAACAACAACAGAGAGTCCTTTCCCTTCACACATCT 177
Query 176 CTCGATTCTGTTATTCTCTGACCGTGAATTCGCAAAATGAGAATCAACACACGACTCTAT 235
|||||||||||| ||||| || || |||||||||||||||||||| ||||||||||||||
Sbjct 178 CTCGATTCTGTTCTTCTCAGAGCGCGAATTCGCAAAATGAGAATCGACACACGACTCTAT 237
Query 236 CAGCACCGGTTTTTTCACGGAGGGTTAATAATAGAAAGATTTCACGGCGGAGGAAGGCGG 295
|| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 238 CATCACCGGTTTCTTCACGGAGGGTTAATAACAGAAAGATTTCACGGCGGAGGAAGGCGG 297
Query 296 GAAAATCACCATCAATCTCGCCGGCGGCGGATGCGGTTGATTTGGCGTTAGACTCAGTGG 355
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GAAAATCATTATCAATCTCGCCGGCGGCGGATGCGGTTGATTTGGCGTTAGACTCAGTGG 357
Query 356 TGAAGATCTTCACTGTTTCTACAAGTCCTAGTTACTTTCTTCCTTGGCAGAATAAGTCTC 415
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TGAAGATCTTTACTGTTTCTACAAGTCCTAGTTACTTTCTTCCTTGGCAGAATAAGTCTC 417
Query 416 AGA-GAGAATCCATGGGCTCTGGATTTGTGATTTCGGGAAGAAAGATTATAACGAATGCG 474
| | ||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 418 A-ACGAGAATCTATGGGCTCTGGATTTGTGATTTCTGGAAGGAAGATTATAACGAATGCG 476
Query 475 CATGTGGTGGCTGATCACTCCTTTGTGTTAGTTAGAAAGCATGGATCGTCGATAAAACAC 534
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CATGTCGTGGCTGATCACTCCTTTGTGTTAGTTAGAAAGCATGGATCGTCGATAAAACAC 536
Query 535 AGAGCAGAAGTTCAAGCGGTTGGTCATGAATGTGATTTGGCAATCTTGGTAGTTGATAGT 594
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 537 AGAGCAGAAGTTCAAGCGGTTGGTCATGAATGTGATTTGGCTATATTGGTAGTTGATAGT 596
Query 595 GAAGTGTTTTGGGAAGGTATGAATTCGTTGGAGCTTGGAGATATACCGTTTCTTCAGGAA 654
|||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||
Sbjct 597 GAAGTGTTTTGGGAAGGTATGAATGCTTTGGAGCTAGGAGATATACCGTTTCTTCAGGAA 656
Query 655 GCTGTGGCTGTAGTTGGCTATCCTCAAGGTGGTGACAACATCTCTGTTACAAAAGGTGTT 714
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 657 GCTGTGGCTGTAGTTGGCTATCCTCAAGGTGGTGACAACATTTCTGTTACAAAAGGTGTT 716
Query 715 GTGTCTCGAGTTGAACCAACACAATATGTTCACGGCGCTACCCAACTAATGGCTATACAA 774
||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||
Sbjct 717 GTGTCTCGAGTTGAACCGACACAATATGTTCACGGTGCCACCCAGCTAATGGCTATACAA 776
Query 775 ATAGATGCTGCTATTAACCCTGGAAATAGTGGTGGCCCAGCAATCATGGGAAACAAAGTA 834
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 777 ATAGATGCTGCTATTAACCCCGGAAATAGTGGTGGCCCAGCTATCATGGGAAACAAAGTA 836
Query 835 GCTGGTGTAGCATTTCAAAATCTTTCAGGTGCTGAGAACATTGGCTATATAATTCCAACA 894
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 837 GCTGGTGTCGCATTTCAAAATCTTTCAGGTGCTGAGAATATAGGCTATATAATTCCAACA 896
Query 895 CCAGTGATTAAGCATTTCATAAATGGTGTTGAAGAATGTGGTAAATACATTGGTTTCTGT 954
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 897 CCAGTGATAAAGCATTTCATAAATGGCGTTGAAGAATGTGGTAAATACATTGGTTTTTGT 956
Query 955 TCAATGGGTGTATCATGTCAGCCTATGGAGAATGGTGAACTTCGTAGCGGTTTTCAGATG 1014
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 957 TCAATGGGTGTATCATGTCAGCCTATGGAGAATGGTGAACTTCGTAGTGGTTTTCAGATG 1016
Query 1015 AGTTCTGAAATGACAGGGGTTCTTGTTAGCAAAATAAACCCTTTATCAGATGCTCACAAA 1074
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1017 AGTTCTGAAATGACAGGGGTTCTTGTTAGCAAAATAAACCCTCTATCAGATGCTCACAAA 1076
Query 1075 CTTTTGAAGAAAGATGATGTTATTCTTGCATTTGATGGTGTTCCTATAGCAAATGATGGA 1134
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1077 ATTTTGAAGAAAGATGATGTTCTTCTTGCATTTGATGGTGTTCCTATAGCAAATGATGGA 1136
Query 1135 ACAGTTCCTTTTCGGAACAGGGAGCGAATCACTTTCGATCATTTGGTTTCTATGAAGAAA 1194
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1137 ACAGTTCCTTTTCGGAACAGGGAGAGAATCACTTTCGACCATTTGGTTTCTATGAAGAAA 1196
Query 1195 CCAGATGAAACAGCCTTGGTTAAAGTCTTGAGGGAGGG-AAAGGAACATGAGTTCAGTAT 1253
|||||||||||||||||||||||||| ||||| ||||| |||| ||||||| ||||||||
Sbjct 1197 CCAGATGAAACAGCCTTGGTTAAAGTTTTGAGAGAGGGGAAAG-AACATGAATTCAGTAT 1255
Query 1254 CACACTAAGACCTCTGCAACCACTGGTTCCAGTGCATCAATTTGATCAGCTTCCCAGTTA 1313
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1256 CACACTAAGACCTCTGCAACCACTAGTTCCAGTGCATCAATTTGATCAGCTTCCCAGTTA 1315
Query 1314 TTATATATTTGCGGGCTTCGTATTTGTACCTCTCACTCAGCCATACCTTCACGAATATGG 1373
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1316 TTATATATTTGCGGGCTTCGTATTTGTACCTCTTACTCAGCCATACCTTCATGAATATGG 1375
Query 1374 AGAAGATTGGTATAACACTTCTCCCCGCACATTGTGCCAGCGTGCATTGAAAGATTTGCC 1433
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1376 AGAAGATTGGTATAACACTTCTCCCCGCACATTGTGCCATCGTGCATTAAAAGATTTGCC 1435
Query 1434 CAAAAAAGCCGGTCAACAACTTGTCATTGTCTCTCAGGTGTTAATGGATGATATCAACAC 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 CAAAAAAGCCGGTCAACAACTTGTCATTGTCTCTCAGGTGTTAATGGATGATATCAACAC 1495
Query 1494 AGGATACGAGCGTCTCGCAGAGCTACAAGTGAATAAAGTGAACGGAGTAGAAGTGGATAA 1553
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1496 AGGATACGAGCGTCTCGCAGAACTACAAGTGAATAAAGTGAACGGAGTAGAAGTGAATAA 1555
Query 1554 TCTGAGACATCTATGTCAGCTCATAGAGAACTGCAACACCGAGAAGCTGAGGATAGACTT 1613
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1556 TCTGAGACATCTATGTCAGCTCATAGAGAACTGCAACACCGAAAAGCTGAGGATAGACTT 1615
Query 1614 AGACGATGAGAGTAGGGTAATCGTATTGAACTACCAATCCGCAAAAATTGCCACTTCTTT 1673
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1616 AGACGATGAGAGTAGGGTAATCGTCTTGAACTACCAATCCGCAAAAATTGCCACTTCTTT 1675
Query 1674 GATTTTGAAACGACACAGAATAGCATCTGCGATTTCCAGCGATCTACTGGTAGAACAAAA 1733
||||||||||||||||||||||||||| ||||||||||||||||| || | ||||||||
Sbjct 1676 GATTTTGAAACGACACAGAATAGCATCAGCGATTTCCAGCGATCTGCTTATCGAACAAAA 1735
Query 1734 TCCAGAAACCGAGTTGGCTTCTTGTTCTGCGGTTTGAGCTAACGCCAACACATATGGCAT 1793
|| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1736 TCTAGAAACCGAGTTGGCTTCTTGTTCTGCGGTTTGAGCTATCGCCAACACGTATGGCAT 1795
Query 1794 GTTGTACACTT-CAAATTCATTCATAATTTGTAAACCACAATCTTGTAT-CGTCATAAAC 1851
||||||||||| |||||||||||||||||||||||| ||||| |||||| | ||||||||
Sbjct 1796 GTTGTACACTTACAAATTCATTCATAATTTGTAAACTACAATGTTGTATAC-TCATAAAC 1854
Query 1852 ATTTAGGATTTGATAAGCCGCTTTTCACGAGCCTGAATTTTGAAAATTATTTATAGAAAA 1911
||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1855 ATTTAGGATTTGATAAGTGGCTTGTCACGAGCCTGAATTTTGAAAATCATTTATAGAAAA 1914
> AT1G65630.1 | Symbols: DegP3 | DegP protease 3 | chr1:24406542-24409068
REVERSE LENGTH=1680
Length=1680
Score = 553 bits (299), Expect = 3e-156
Identities = 809/1052 (77%), Gaps = 48/1052 (5%)
Strand=Plus/Plus
Query 332 TTGATTTGG-CGTTAGACTCAGTGGTGAAGATCTTCACTGTTTCTA-CAAGTCCTAGTTA 389
||||||||| | | | |||| ||||||||| | ||||| || |||| |||| ||||| |
Sbjct 269 TTGATTTGGCCCTCA-ACTCGGTGGTGAAGGTATTCACCGTCTCTAGCAAG-CCTAG--A 324
Query 390 C--TTTCTTCCTTGGCAGAATAAGTCT-CAGAGAGAATCCATGGGCTCTGGATTTGTGAT 446
| |||| ||||||||| || | | | ||||| ||| || |||||||| ||||| ||
Sbjct 325 CTTTTTCAACCTTGGCAG-ATTACTATGCAGAGTGAAAGCACCGGCTCTGGTTTTGTAAT 383
Query 447 TTCGGG-AAGAAAGATTATAACGAATGCGCATGTGGTGGCTGATCACTCCTTTGTGT-TA 504
||||| |||||| ||| | |||||||| ||||| |||||| |||| | | || | |
Sbjct 384 CTCGGGAAAGAAA-ATTCTTACGAATGCTCATGTAGTGGCTAATCAAACATCCGT-TAAA 441
Query 505 GTTAGAAAGCATGGATCGTCGATAAAACACAGAGCAGAAGTTCAAGCGGTTGGTCATGAA 564
|| |||||||||| || | | ||| ||| |||| |||||||||||||||||||||||
Sbjct 442 GTCCGAAAGCATGGTTCAACCACAAAGTACAAAGCAAAAGTTCAAGCGGTTGGTCATGAA 501
Query 565 TGTGATTTGGCAATCTTGGTAG-TTGATAGTGA-AGTGTTTTGGGAAGGTATGAATTCGT 622
||||||||||| ||||||| || |||||| ||| | ||||||||| || ||||| | |
Sbjct 502 TGTGATTTGGCCATCTTGG-AGATTGATAATGATAA-GTTTTGGGAGGGAATGAACCCCT 559
Query 623 TGGAGCTTGGAGATATACCGTTTCTTCAGGA-AGCTGTGGCTGTAGTTGGCTATCCTCAA 681
|||| || || |||||||| | | | ||||| | | ||| ||| ||||||||||| ||
Sbjct 560 TGGAACTCGGGGATATACCCTCTATGCAGGACACC-GTGTATGTTGTTGGCTATCCAAAA 618
Query 682 GGTGGTGACAACATCTCTGTTACAAAAGGTGTTGTGTCTCGAGTTGAACCAACACAATAT 741
|||||||| | ||| || ||| | |||||||||||||| |||||| ||| | | ||||
Sbjct 619 GGTGGTGATACCATATCCGTTTCGAAAGGTGTTGTGTCGAGAGTTGGACCCATAAAATAC 678
Query 742 -GTTCACGGCG-CTACCCAACTAATGGCTATACAAATAGATGCTGCTATTAACCCTGGAA 799
|| ||| ||| | || ||||| |||| |||||||||||||| ||||| || |||||
Sbjct 679 AGT-CACAGCGGC-ACTGAACTACTGGCAATACAAATAGATGCAGCTATCAATAATGGAA 736
Query 800 ATAGTGGTGGCCCAGCAATCATGGGAAACAAAGTAGCTGGTGTAGCATTTCAAAATCT-T 858
|||||||||| || | |||||||||||||||||| ||||||||||||||| ||| ||| |
Sbjct 737 ATAGTGGTGGTCCGGTAATCATGGGAAACAAAGTCGCTGGTGTAGCATTTGAAAGTCTAT 796
Query 859 -TCAGGTGCTGAGAACATTGGCTATATAATTCCAACACCAGTGATTAAGCATTTCATAAA 917
| | | | || | || ||||| ||||||||||| || || |||| |||||| ||||
Sbjct 797 GTTAT-TCC-GATAGTATAGGCTACATAATTCCAACTCCGGTCATTAGGCATTTTTTAAA 854
Query 918 TGGTGTTGAAGAATGTGGTAAATACATTGGTTTCTGTTCAATGGGTGTATCATGTCAGCC 977
|| | |||||||| ||||| || | || ||||| | ||||| | || ||| ||||
Sbjct 855 TGCTATTGAAGAAAGTGGTGAAGATGTTAGTTTCGGCTCAATAAATCTAACATATCAGAA 914
Query 978 TATGGAGAATGGTGAACTTCGTAGCGGTTTTCAGA-TGAGTTCTGAAATGACAGGGGTTC 1036
||||| |||| | |||| |||| || |||| | |||| | |||||||||| |||
Sbjct 915 AATGGACAATGATCAACTCCGTAA-GGACTTCAAAATGAGCGATAAAATGACAGGCATTC 973
Query 1037 TTGTTAGCAAAATAAACCCT-TTATCAGATGCTCACAAACTTTTGAAGAAAGATGATGTT 1095
|| | | |||||||||||| || || |||| ||||||| || |||| |||||||| |
Sbjct 974 TTATAAACAAAATAAACCCGCTT-TCGGATGTTCACAAAGTTCTGAAAAAAGATGACATC 1032
Query 1096 ATTCTTGC-ATTTGATGGTGTTCCTATAGCAAATGATGGAACAGTTCC-TTTTCGGAACA 1153
||||| || ||| |||||||||||||||| ||| ||| | |||| || |||||| || |
Sbjct 1033 ATTCTCGCGATT-GATGGTGTTCCTATAGGAAACGATAGTTCAGT-CCATTTTCGTAAGA 1090
Query 1154 GGGAGCGAATCACTTTCGATCATTTGGTTTCTATGAAGAAACCA-GATGAAACAGCCTTG 1212
||| ||||| |||||| | |||||||||||||||||||||||| | ||| ||||| ||
Sbjct 1091 AGGAACGAATAACTTTCAAGCATTTGGTTTCTATGAAGAAACCATG-TGAGACAGCATTA 1149
Query 1213 GTTAAAGTCTTGAGGGAGGGAAAGGAACATGAGTTCAGTA-TCACACTAAGA-CCTCTGC 1270
|||||||||| || |||||||| || ||||||| | || | | |||| | || | |
Sbjct 1150 CTTAAAGTCTTAAGAGAGGGAAAAGAGTATGAGTTTAATAGT-AGTCTAAAATCCG-TAC 1207
Query 1271 AACCACTGGTTCCAGTGCATCAATTTGATCA-G-CTTCCCAGTTATTATATATTTGCGGG 1328
|||||| |||||| || ||||| ||| || | || | |||||||||||||| | |||
Sbjct 1208 CACCACTAGTTCCAAAGCGTCAATATGA-CAAGTCTGCA-AGTTATTATATATTCGGGGG 1265
Query 1329 -CTTCGTATTTGTACCTCTCACTCAGCCATAC 1359
||| || ||| ||||||| ||| | ||||||
Sbjct 1266 TCTT-GTTTTTTTACCTCTAACTAAACCATAC 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94628027325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5