BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493691
Length=2514
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37180.1 | Symbols: SUS5, ATSUS5 | sucrose synthase 5 | chr5... 3886 0.0
> AT5G37180.1 | Symbols: SUS5, ATSUS5 | sucrose synthase 5 | chr5:14718238-14722913
FORWARD LENGTH=2511
Length=2511
Score = 3886 bits (2104), Expect = 0.0
Identities = 2386/2522 (95%), Gaps = 19/2522 (1%)
Strand=Plus/Plus
Query 1 ATGGAAATGCCATCTGGATCGTTAGGCAATGGGATCCCAGAAGCGATCGGACAAAACCGT 60
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGAAATGACATCTGGATCGTTAGGCAATGGGATCCCAGAAGCGATGGGACAAAACCGC 60
Query 61 GGGAACATAAAACGTTGCCTCGAGAAGTACATTGAGAATGGCAGAAGGGTGATGAAATTG 120
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GGGAATATTAAACGTTGCCTCGAGAAGTATATTGAGAATGGCAGAAGGGTGATGAAATTG 120
Query 121 AACGAGTTGATGGATGAGATGGAGATTGTTATCAATGATGTAA-AGCAACGAAGGCGAGT 179
||||||||||||||||| ||||| ||||||||||||||||||| | ||||||||||||||
Sbjct 121 AACGAGTTGATGGATGAAATGGAAATTGTTATCAATGATGTAACA-CAACGAAGGCGAGT 179
Query 180 CATGGAAGGCGATCTAGGCAAGATCTTGTGCTTCACTCAGGAAGCAGTGGTAATTCCTCC 239
||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||
Sbjct 180 CATGGAAGGCGATCTTGGCAAGATCTTGTGCTTCACTCA-G--GCAGTGGTAATTCCTCC 236
Query 240 AAATGTAGCATTTGCGGTAAGAGGAAACCCGGG-AATATGGCAATACACGAAAGTTAACT 298
|| ||||| || || |||||||||| |||||| ||| ||||||||| |||||||||||
Sbjct 237 GAACGTAGCGTTCGCAGTAAGAGGAACCCCGGGAAAT-TGGCAATACGTGAAAGTTAACT 295
Query 299 CTTCCAATCTTTCCGTGGAAGCTCTATCGAGCACACAATATCTCAAACTCAAAGAGTTTC 358
|||||||||| || || ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 296 CTTCCAATCTCTCGGTAGAAGCTCTATCGAGCACGCAATATCTCAAACTTAAAGAGTTTC 355
Query 359 TCTTTGACGAGAATTGGGCAAACGATGAAAATGCATTGGAGGTTGATTTTGGAGCGTTGG 418
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 356 TCTTCGACGAGAATTGGGCAAACGATGAAAATGCATTGGAGGTTGATTTTGGAGCGCTGG 415
Query 419 ATTTCACTCTTCCTTGGCTTTCATTGCCATCTTCCATAGGAAACGGCGTCAGTTTTGTGT 478
|||||||||||||||||||||| ||| ||||||| |||||||||||| | ||||||||||
Sbjct 416 ATTTCACTCTTCCTTGGCTTTCGTTGTCATCTTCAATAGGAAACGGCCTGAGTTTTGTGT 475
Query 479 CCTCAAAGCTCGGAAGCCGTTTAAACGATAACCCGCAGTCTCTCGTGGACTACTTGTTGT 538
|||| ||||||||| | |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 476 CCTCGAAGCTCGGAGGGCGTTTAAACGATAACCCGCAATCTCTCGTGGACTACTTGTTGT 535
Query 539 CACTTGAGCATCAAGGAGAGAAGCTTATGATGAATGAGACTCTAAACACGGCTAGAAAGC 598
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 536 CACTTGAGCATCAAGGAGAGAAGCTTATGATGAATGAGACTCTTAACACGGCTAGAAAGC 595
Query 599 TTGAGATGAGTTTGATTTTGGCTGATGTTTTCCTATCGGAGCTACCTAAGGACACACCTT 658
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 596 TTGAGATGAGTTTGATTTTGGCAGATGTTTTCCTATCGGAGCTGCCTAAGGACACACCTT 655
Query 659 TCCAAGCCTTTGAACTCAGGTTTAAGGAATGGGGTTTTGAGAAAGGATGGGGAGAAAGCG 718
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 656 TCCAAGCCTTTGAACTCAGGTTTAAGGAATGTGGTTTTGAGAAAGGATGGGGAGAAAGCG 715
Query 719 CAGGGAGAGTTAAGGAGACAATGAGAATTTTGTCGGAGATTCTTCAAGCCCCTGATCCTC 778
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 716 CAGGGAGAGTAAAGGAGACAATGAGAATCTTGTCGGAGATTCTTCAAGCCCCTGATCCTC 775
Query 779 ACAACATTGATCGATTCTTCGCTAGGATTCCTAGAATATTTAACGTTGTTATCTTCTCGG 838
| |||||||||||||||||||| ||| |||||||||| ||||||||||| ||||||||||
Sbjct 776 AAAACATTGATCGATTCTTCGCAAGGGTTCCTAGAATCTTTAACGTTGTCATCTTCTCGG 835
Query 839 TTCACGGCTACTTTGGCCAAACCGATGTTCTTGGTTTGCCTGATACTGGCGGTCAAGTCG 898
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 836 TTCACGGCTACTTTGGTCAAACCGATGTTCTAGGTTTGCCTGATACTGGCGGTCAAGTCG 895
Query 899 TTTACATTCTTGATCAAGTTAAGGCCCTTGAAGATGAATTGCTTCATAGAATCAACTCTC 958
||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 896 TTTACATTCTTGACCAAGTTAAAGCCCTTGAAGATGAATTGCTTCAAAGAATTAACTCTC 955
Query 959 AAGGCCTTAATTTCAAACCTCAGATTCTTGTTGTAACGCGATTAATCCCTGATGCTAAAA 1018
||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 956 AAGGCCTTAATTTCAAACCTCAGATTCTTGTTGTAACACGATTAATCCCAGACGCTAAAA 1015
Query 1019 ACACTAAATGCAACCAAGAATTGGAACCTATTTTCGGTACCAAACATTCAAATATTCTTC 1078
| ||||||||||||||||| ||||||||||||||||| || ||| |||| ||||||||||
Sbjct 1016 AAACTAAATGCAACCAAGAGTTGGAACCTATTTTCGGAACGAAATATTCGAATATTCTTC 1075
Query 1079 GAATTCCATTTGTAACAGAGAATGGAATTTTACGACGTTGGGTTTCCCGCTTTGATATAT 1138
||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |
Sbjct 1076 GAATTCCATTTGTAACAGAAAATGGGATTTTACGTCGTTGGGTTTCCCGCTTTGATATCT 1135
Query 1139 ATCCC-TACCTAGAAAGATTCACTAAGGATGCAACAACAAAAATATTGGATATTTTGGAA 1197
| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1136 A-CCCATACCTAGAAAGATTCACTAAGGATGCAACAACAAAGATATTGGATATTTTGGAA 1194
Query 1198 GGAAAACCTGACCTAATCATCGGAAATTATACGGATGGAAACTTAGTGGCATCACTCATG 1257
||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||
Sbjct 1195 GGAAAACCTGACCTAATAATCGGGAACTATACGGATGGAAACTTGGTGGCATCACTCATG 1254
Query 1258 GCTAATAAGCTTGGAATTACTCAGGCAACTATTGCACATGCCTTGGAGAAGACTAAATAT 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 GCTAATAAGCTTGGAATTACTCAGGCAACTATTGCACATGCCTTGGAGAAGACTAAATAT 1314
Query 1318 GAAGACTCAGATATCAAATGGAAAGAGTTTGATCCTAAATATCATTTCTCATCTCAATTT 1377
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 GAAGATTCAGATATCAAGTGGAAAGAGTTTGATCCTAAATATCATTTCTCATCTCAATTT 1374
Query 1378 ACGGCAGACTTAATCTCTATGAACTCTGCTGATTTCATCATAGCAAGCACTTATCAAGAG 1437
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1375 ACGGCAGACTTAATCTCTATGAACTCTGCCGATTTCATCATAGCTAGCACTTATCAAGAA 1434
Query 1438 ATTGCTGGAAGCAAAGAGAGGG-TGGGACAATACGAGAGCCACATGAGCTTCACACTCCC 1496
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||
Sbjct 1435 ATTGCTGGAAGCAAAGAGAGGGCTGG-ACAATACGAGAGCCACATGAGCTTCACAGTCCC 1493
Query 1497 GGGCCTATACAGAGTTGTCTCCGGCATTAATGTCTTTGATCCGAGGTTCAACATCGCAGC 1556
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1494 GGGGCTATACAGAGTTGTCTCCGGCATTAATGTCTTCGATCCGAGGTTCAACATCGCAGC 1553
Query 1557 TCCTGGCGCGGATGA-TACTATCTACTTCCCTTTTACCGCACAAGACCGGAGATTCACCA 1615
||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1554 TCCTGGCGCGGATGACT-CTATCTATTTCCCTTTTACCGCACAAGACCGGAGATTCACCA 1612
Query 1616 AGTTTTATC-CTTCCATTGACGAACTCTTGTTTAGCCAAAATGAGAATGATGAACACATT 1674
|||| || | |||||||||| |||||||||| |||||||| ||||||||| ||||||||
Sbjct 1613 AGTTCTA-CACTTCCATTGATGAACTCTTGTATAGCCAAAGTGAGAATGACGAACACATC 1671
Query 1675 GGTTATTTGGTGGATAAGAAGAAACCGATCATCTTCTCAATGGCAAGGCTTGATGTTGT- 1733
|||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1672 GGTTATTTAGTGGACAAGAAGAAACCGATCATTTTCTCAATGGCAAGGCTTGATGTTGTC 1731
Query 1734 AAAGAACTTAACGGGATTAACTGAGTGGTATGCCAAGAACAAGAGGCTACGAGACTTGGT 1793
||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 AAA-AACCTAACCGGATTAACTGAGTGGTATGCCAAGAACAAGAGGCTACGAGACTTGGT 1790
Query 1794 GAACCTCGTGATCGTAGGAGGATTCTTCGACCCTTCCAAGTCTAAAGACAGGGAAGAGAT 1853
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1791 GAACCTCGTGATCGTAGGAGGATTCTTCGACGCTTCTAAGTCTAAAGACAGGGAAGAGAT 1850
Query 1854 CTCAGAGATCAAGAAGATGCATTCTCTGATTGAAAAATACCAACTCAAGGGTCAATTTAG 1913
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1851 CTCAGAGATCAAGAAGATGCATTCTCTGATTGAGAAATACCAACTCAAGGGTCAATTTAG 1910
Query 1914 ATGGATTGCAGCTCAAACAGATCGAACCAGAAACGGTGAACTTTACCGATGTATTGCAGA 1973
|||||| ||||||||||||||||||| |||||||||||||||||||||| ||| || ||
Sbjct 1911 ATGGATCACAGCTCAAACAGATCGAACAAGAAACGGTGAACTTTACCGATCTATCGCGGA 1970
Query 1974 TACAAGAGGTGCTTTTGTGCAGCCTGCACATTATGAAGCCTTTGGACTTACTGTCATTGA 2033
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1971 TACAAGAGGTGCTTTTGTGCAGCCTGCACATTATGAAGCCTTTGGTCTTACTGTCATTGA 2030
Query 2034 AGCAATGAGCTGTGGTTTGGTCACATTCGCCACGAACCAAGGCGGTCCTGCGGAGATTAT 2093
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2031 AGCCATGAGCTGTGGTTTGGTCACATTCGCCACGAACCAAGGCGGTCCTGCTGAGATTAT 2090
Query 2094 TGTGGATGGTGTCTCTGGATTCCACATTGACCCGAGCAATGGAGAAGAATCAAGTGATAA 2153
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 TGTGGATGGTGTCTCTGGTTTCCACATTGACCCGAGCAATGGAGAAGAATCAAGTGATAA 2150
Query 2154 GATTGCGGATTTCTTTGAGAAATCCGGTACCGATCTTGATTATTGGAATATGTTTTCGAC 2213
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 2151 GATTGCGGATTTCTTTGAGAAATCCGGTATGGATCCTGATTATTGGAATATGTTTTCGAA 2210
Query 2214 TGAAGGGCTGCAACGCATAAACGAATGCTATACATGGAAGATATATGCAAACAAAGTGAT 2273
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2211 TGAAGGGCTACAACGCATAAACGAATGCTATACATGGAAGATATATGCAAACAAAGTGAT 2270
Query 2274 AAACATGGGGAGTACATATAGCTACTGGAGATATTTGAACAAAGATCAGAAACTTGC-AA 2332
||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||
Sbjct 2271 AAACATGGGGAGTACATATAGCTACTGGAGACATTTGAACAAAGATCAGAAACTGGCCAA 2330
Query 2333 AGCAAAGATATATCCATTCCTTCTACAATCTTCAATACCGAAATTTGGTGAAAAATATAC 2392
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2331 A-CAAAGATATATCCATTCCTTCTACAATCTTCAATACCGAAATTTGGTGAAAACTATAC 2389
Query 2393 CAATATTGAATGATATTCCTCAGCCACCACCTCCTCCTCCAAAGCCTTTGGTGAAACCAT 2452
| ||||||| |||||||||| |||| || |||| ||||||||||||||||||||||||||
Sbjct 2390 CCATATTGAGTGATATTCCTGAGCCTCCTCCTCTTCCTCCAAAGCCTTTGGTGAAACCAT 2449
Query 2453 CAGCATCAAAAGGCTCGAGGCGAACACAGTCGCGATTGAGTTTCAGGTTGTTTGGTGCTT 2512
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 2450 CAGCATCAAAAGGCTCGAAGCGAACACAGCCGCGATTGAGTTTCAGGTTGTTTGGTGCTT 2509
Query 2513 AA 2514
||
Sbjct 2510 AA 2511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124765187241
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5