BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493697
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37055.1 | Symbols: ATSWC6, SEF | HIT-type Zinc finger famil... 970 0.0
> AT5G37055.1 | Symbols: ATSWC6, SEF | HIT-type Zinc finger family
protein | chr5:14641551-14642440 REVERSE LENGTH=652
Length=652
Score = 970 bits (525), Expect = 0.0
Identities = 597/631 (95%), Gaps = 7/631 (1%)
Strand=Plus/Plus
Query 1 AAATCCGCCGCTGCGCTTCCAACG-TCGCCGGCTATCTAAACATTTTCCGGGATGGAGGA 59
||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2 AAATCCGTCGCTGCGCTTCCAACGTTCGCCGGCAATCTAAACATTTTCCGGGATGGAGGA 61
Query 60 AGAGATGTCGAACCGTCGAGTATCAAATCGGACTCGCAAGGTCGCTACGAAGATGGCGGC 119
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 62 AGAGATGTCGAACCGTCGAGTATCAAATCGGACTCGTAAGGTCGCTACGAAGATGGCGGC 121
Query 120 GGCTCTTACAAGCAATGATAATCGAACACAGGCTGCTATAGCTAGGCTGGAGGCTTTAGA 179
||||||||||||||| || |||||||| |||||||||||||||||||| |||||||||||
Sbjct 122 GGCTCTTACAAGCAACGACAATCGAACTCAGGCTGCTATAGCTAGGCTAGAGGCTTTAGA 181
Query 180 GAATGATAATGGTGCTGTTGAAGTGGTAGATATGAACGATGATGACGAAGCTTCTCTTGA 239
||| |||||||||||| |||||||| ||||| ||||||||||||| ||||||||||||||
Sbjct 182 GAACGATAATGGTGCTATTGAAGTGATAGATTTGAACGATGATGAAGAAGCTTCTCTTGA 241
Query 240 TGAAGACGATGATCTTGGTTACGTACAGAAGAAGCAACACAAAGGATCAAAGCGTAAAAC 299
|||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 242 TGAAGATGATGATCTCGGTTACTTACAGAAGAAGCAACACAAAGGATCAAAGCGTAAAAC 301
Query 300 TCGACAAGCGAAAGCTTTAGAAGCTCGTAGAGCTCCTAAATCATTCCTTGAGCTGTTGCA 359
||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||
Sbjct 302 TCGACAAGCGAAAGCTTTAGAAGCTCGTAAAGCTCCTAAATCCTTCCTTGAGCTATTGCA 361
Query 360 AGAGGCAAATTTGGAATCTTTACC-TGCGCATGTACCGACTTACTTGAAAGCAGCTGTTG 418
||||||||||||||| |||||||| | |||||||||||||||||||||||||||| ||||
Sbjct 362 AGAGGCAAATTTGGAGTCTTTACCGT-CGCATGTACCGACTTACTTGAAAGCAGCAGTTG 420
Query 419 GACCTCCGAGTTCGTCTTCTCGTCGCCATTTCTGCTCGGTTTGTGGTTACATTGCAGGCT 478
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
Sbjct 421 GACCTCCGAGTTCGTCTTCTCGTCGCTATTTTTGCTCGGTTTGTGGTTACATTGCAGGTT 480
Query 479 ACAATTGTTGTTTATGTGGGATGAGGTTTTGTTCTATTCGTTGTCAAAACATTCACAAGG 538
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 ACAATTGTTGTTTATGTGGGATGAGGTTTTGTTCTATTCGTTGTCAAAATATTCACAAGG 540
Query 539 ATACTCGTTGTCAGAAATTTGTTGCGTAGGAAAG-AGTG--AAAACATATGTAACATATT 595
||||||||||||||||||||||||| |||||||| |||| |||||| ||||||||||||
Sbjct 541 ATACTCGTTGTCAGAAATTTGTTGCATAGGAAAGGAGTGTGAAAACAAATGTAACATATT 600
Query 596 TTTCTAAATGTATTTGAAACATCAATCAATC 626
|||| ||||||||||||||||||| ||||||
Sbjct 601 TTTCAAAATGTATTTGAAACATCA-TCAATC 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30894000405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5