BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493700
Length=1958
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2804 0.0
AT1G65710.1 | Symbols: | unknown protein; INVOLVED IN: N-termi... 130 5e-29
> AT5G37010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING:
13 growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G65710.1); Has 6746 Blast hits
to 5259 proteins in 486 species: Archae - 7; Bacteria - 485;
Metazoa - 3508; Fungi - 577; Plants - 378; Viruses - 50;
Other Eukaryotes - 1741 (source: NCBI BLink). | chr5:14620732-14622941
REVERSE LENGTH=2097
Length=2097
Score = 2804 bits (1518), Expect = 0.0
Identities = 1836/1985 (92%), Gaps = 40/1985 (2%)
Strand=Plus/Plus
Query 2 CTCAAAAACGCTCTCTTCATCTTCTTCTTC-A-AGCGTCTGCTTCAAATTTCTTCAGCAA 59
||||||||||||||||||||||||||| | | |||||||||||| ||||||||||||||
Sbjct 4 CTCAAAAACGCTCTCTTCATCTTCTTCACCAAGAGCGTCTGCTTC-AATTTCTTCAGCAA 62
Query 60 ATGGGTTGCTGTCTCAGCAAAAATCCTCCTCCAGCTTCTTCTTCTTCTCCGATTAACGGA 119
||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| |||||
Sbjct 63 ATGGGTTGCTGTCTCAGCAAAAATCCTCCTCAAGCTTCTTCATCTTCTCTAATTGACGGA 122
Query 120 TCTTGTTCCGTTAAATCACCAGATCCGAACAAATCCGCCATTGATAAACCTCTGAAACTA 179
||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 123 TCTTGTTCCGTAAAATCACCAGATCTGAACAAATCCGCCATTGATACACCTCTGAAACTA 182
Query 180 GAAGCACAAGAGAAGAAG-CTCACAGTAGAGGAATCGAAACCAAAGAATGAAGAA-ACAG 237
|||||||||||||||||| ||| |||||| ||||||||||||| |||||||||| | |
Sbjct 183 GAAGCACAAGAGAAGAAGATTCA-AGTAGAAGAATCGAAACCAAGGAATGAAGAAGA-AA 240
Query 238 AGATACAAGAAGAGAAT-AT--CAAGCCGAGAAAAGAAGTGTTCGTGATAAAACATCGGA 294
||||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 241 AGATACAAGAAGATAATAATAGCAAGCCGAGGAAAGAAGTGTTCGTGATAAAACATCGGA 300
Query 295 GAAGCCATGAGAAATCATCGAAGACGACGACAGATCCGGAGGATTCTTCTGTTTCTGATG 354
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 301 GAAGCCATGAGAAATCATCGAAGACGACGACAGATCCGGAAGATTCTTCTGTTTCCGATG 360
Query 355 TGAAATCAACTGGTTCGAATCATAATCCGGTTGATGTTGATGCGATTTTGATTCAGTGTG 414
|||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 361 TGAAATCAACCGGTTCGAATCATAATCCGGTTGATGTAGATGCGATTTTGATCCAGTGTG 420
Query 415 GGAGATTGAGTCGGAGTAACTCAGCCGCTGCGAAAACGAGGAGATATTCTGGATCTAAGA 474
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 GGAGATTGAGTCGGAGTAACTCAGCCGCTGCGAAAACTAGGAGATATTCTGGATCTAAGA 480
Query 475 GGAGTTTCGATTTTGATCAGAACGGTGGTGACGCGGATGCGGAAGATGGCGGAGAAGAAG 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 GGAGTTTCGATTTTGATCAGAACGGTGGTGACGCGGATGCGGAAGATGGCGGAGAAGACG 540
Query 535 AAGAAGCTGAGAGGAGGATTCATCGGCAGCGTCAACGTGGTGGAGAATCGCCTCGGGAAC 594
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 541 AAGAAGCTGAGAGGAGGATTCATCGTCAGCGCCAACGTGGTGGAGAATCGCCTCGGGAAC 600
Query 595 GGAGAAGACGAACTCCGAGTAGAGAGAGGGATGATTCGAAGAGTTATAGATCGGGAAGTA 654
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 601 GGAGAAGACGAACTCCGAGTAGAGAGAGGGATGATTCGAAGAGTAATCGATCGGGAAGTA 660
Query 655 GAGAGAGAGGAAGTGGTAATGGTGGTGGTGGTAGTAGACGGGTGAGTAGATCTCCGGGAA 714
|||||||||||||| || | |||||||| ||| |||| |||||||||||||||||||
Sbjct 661 GAGAGAGAGGAAGTAGTGGTAACGGTGGTGGAAGTCGACGAGTGAGTAGATCTCCGGGAA 720
Query 715 GAAGATCGGAGATAAACCCTAATTCCAGTGGCAATTCTGTGAATTCGAGTAACAA---TA 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 721 GAAGATCGGAGATAAACCCTAATTCCAGTGGCAATTCTGTGAATTCGAGTAACAACAATA 780
Query 772 GACCTGGGAAATTTGTATCTGTTCCTGCAACAGATAAGGCTTTAAGTAACAA---TGGAG 828
||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 781 GACCTGGGAAATTTGTATCTGTTCCTGCAACAGATAAAGCTTTAAGCAACAACAATGGAG 840
Query 829 ATGGATCTGTGAAACGGATTACTGTGAAGAGAAACGTTGGAAAAGCTGCGTCTCCGAGGT 888
||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 841 ATGGATCTGTGAAACGGATTACTGTTAAGAGAAACGTTGGAAAAGCGGCTTCTCCGAGGT 900
Query 889 CTCAGTCACCGGCGAGAGCGGCGAGTCAGCCTTCGCCGTCGAAGCTTAGCCGGAAAACGG 948
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 901 CTCAGTCACCGGCGAGAGCTGCGAGTCAGCCTTCTCCGTCGAAGCTTAGCCGGAAAACGG 960
Query 949 AGCATTCTCCGTATAGGAGGAATCCATTGGGTGAGATTGATCCAAACTCTGTAGCGTTTC 1008
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 961 AGCATTCTCCGTATAGGAGGAATCCACTGAGTGAGATTGATCCAAACTCTGTAGCGTTTC 1020
Query 1009 CACTCTCTCAAGGTGCTGGTAACACCAAT-TG-TAACAA-A-A-GGATGATGAACAGAGA 1063
||||||||||||||| | || | || |||||| | | |||||||||| |||||
Sbjct 1021 CACTCTCTCAAGGTGATA--AATTGGGTTCTGGTAACAACATAAGGATGATGAATAGAGA 1078
Query 1064 CACTGACAATCAAGGATTGATTAAAGAATCTGGAAATTTCGTTGCTCAGAAGTTGAATCC 1123
|| ||| |||||||||||| ||||||||||||||| |||||| |||||||||||||||||
Sbjct 1079 CAATGAAAATCAAGGATTGGTTAAAGAATCTGGAACTTTCGTAGCTCAGAAGTTGAATCC 1138
Query 1124 TGTGATGATGAATACGAAA-ACTGCTACTCAAGCGCCAATCCGAAGAACCGCAAGTCCGA 1182
|||||||| | ||| ||| || | ||| ||||||||||||||||||||||| || ||||
Sbjct 1139 TGTGATGA--A-TAC-AAAGACGGTTACACAAGCGCCAATCCGAAGAACCGCGAGCCCGA 1194
Query 1183 GTCGTGCAATCAAAGAGCAGCAAGAGGGAGTTGAAGAGTGTAAGATAGTG-TTATCATCT 1241
||||||| ||||| ||||||||||||| ||| |||||||||||||||||| || ||||||
Sbjct 1195 GTCGTGCCATCAAGGAGCAGCAAGAGGCAGTGGAAGAGTGTAAGATAGTGGTT-TCATCT 1253
Query 1242 GTAACTGAAATGGCTAAGCCTCAAATTGTGAGCAGGAGCAGATCTTTGAGGAAATCTCGT 1301
| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GGAACTGAGTTGGCTAAGCCACAAATTGTGAGCAGGAGCAGATCTTTGAGGAAATCTCGT 1313
Query 1302 GATTTCGACTTCAGTCCCGAAGCATTGCTCTCAAACAACATCGACATTAACAATGTTAAC 1361
|||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 1314 GATTTCGATTTCAGTCCCGAAGCATTGCTCTCAAACAATATCGATATCAACAATGTTAAC 1373
Query 1362 AGTAACAATGCAACTGCAGGGTCAACGTTTCCTTCTTACACAGCTTTGCTTTTAGAAGAC 1421
|||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 1374 AGTAACAATGCAACTGCAGGATCAACGTTTCCGTCTTATACAGCTTTGCTTTTAGAAGAT 1433
Query 1422 ATTCAGAATTTCCACCAGAAGAGTGTTAATGTCAATGCCTTAAGTTCAACTATGTCCAAG 1481
|||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||
Sbjct 1434 ATTCAGAATTTCCACCAGAAGAGTGTTAATGTCAGTGCGTTAAGTTCATCTATGTCCAAG 1493
Query 1482 GCTTGTTCTATTGTTGAAGCAGTTGCAGATCTTAACTCCACTACGAATCAACATCAAAGA 1541
|||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1494 GCTTGTTCCATTGTCGAAGCAGTTGCAGATCTTAACTCTGCTACGAATCAACATCAAAGA 1553
Query 1542 ACAGAGGTCAGTTTCACATCCGCAGCAGCGAAGAAAGCGGATCTAATGGAGCC-AGGTTT 1600
|| |||||||||||||||||||| |||||||||||||||||| |||||||||| || |||
Sbjct 1554 ACCGAGGTCAGTTTCACATCCGCTGCAGCGAAGAAAGCGGATTTAATGGAGCCGAG-TTT 1612
Query 1601 CGAGAAGTATGTGACTGTTAAGAGAGGTGGTTCATCATTGGAGGATATGGAAGAGCAAGA 1660
||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||
Sbjct 1613 CGAGAAGTATGTGACTGTTAAGAGAGGTGGTTCTTCGTTGGATGACATGGAAGAGCAAGA 1672
Query 1661 ATCTTCAGGAAGCAACAGTTTCACGGGAAGCAGTTGTGTGGTGCAGCGACAAGGATACTC 1720
||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||
Sbjct 1673 ATCTTCAGGAAGCAACAGTTTTACGGGAAGTAGTTGCGTGGTGCAGCGACAGGGATACTC 1732
Query 1721 ATCGTCTTCTTCATGGGAACCGAATTCAGCTGAATCGACAGATCGCGTGAGTGCGAGATC 1780
|||||| |||||||||||||||||||||||||||||||| ||||| |||||| ||||||
Sbjct 1733 ATCGTCGTCTTCATGGGAACCGAATTCAGCTGAATCGACGGATCGAGTGAGTATGAGATC 1792
Query 1781 A--AA-CAAACAAGAACGTGACCGGAGTCCACTTGGTGTGAATGT-TGAGAAACAAGAGT 1836
| || ||||||||||||||| ||||||||||||||||||||| | ||||||||||||||
Sbjct 1793 ATCAAACAAACAAGAACGTGATCGGAGTCCACTTGGTGTGAAT-TATGAGAAACAAGAGT 1851
Query 1837 TTGATCCGTTGAAGAAGAATGGCGTTGGCGTTGGACGCAAAAGAGTAGCTGTTGTTGATT 1896
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1852 TTGATCCGTTGAAGAAGAATGGTGTTGGAGTTGGACGCAAAAGAGTAGCTGTTGTTGATT 1911
Query 1897 CGTCTTCTTCAGGCAA-GGT-T-CTTCAGGCAACAACAACTCGTGTTGCTGCAGTTTCAA 1953
|||| ||||||||||| ||| | |||||||||||||| ||||||||||||||||| ||||
Sbjct 1912 CGTCGTCTTCAGGCAAAGGTGTTCTTCAGGCAACAACGACTCGTGTTGCTGCAGTATCAA 1971
Query 1954 TGTAA 1958
|||||
Sbjct 1972 TGTAA 1976
> AT1G65710.1 | Symbols: | unknown protein; INVOLVED IN: N-terminal
protein myristoylation; EXPRESSED IN: cultured cell; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37010.1);
Has 2241 Blast hits to 1776 proteins in 164
species: Archae - 0; Bacteria - 29; Metazoa - 1759; Fungi
- 94; Plants - 93; Viruses - 17; Other Eukaryotes - 249 (source:
NCBI BLink). | chr1:24436901-24438542 REVERSE LENGTH=1642
Length=1642
Score = 130 bits (70), Expect = 5e-29
Identities = 331/446 (74%), Gaps = 61/446 (14%)
Strand=Plus/Plus
Query 582 TCGCCTCGGGAACGGAGAAGACGAACTCCGAGTAGAGAGAGGGATGATTCGAAGAGTTAT 641
|||||||| ||||||||||||||||||||||||||||| | | || ||| || ||
Sbjct 608 TCGCCTCGTGAACGGAGAAGACGAACTCCGAGTAGAGA-A---A-GA---GAA-AG--AT 656
Query 642 AGATCGGGAAGTAGAGAGAGAGGAA--GT-GGTAATGGTGGTGGTGGTAGTAG-ACGGGT 697
||||||| ||||| ||||||| || || ||| || ||||||||||| | | ||
Sbjct 657 ----CGGGAAGCAGAGAAAGAGGAAATGTCGGCGGTGGCGGCGGTGGTAGTAGGA-GAGT 711
Query 698 GAGTAGATCTCCGG-GAAGAAGATCGGAGATA---AACCCTAATTCCAGTGGCAATTCTG 753
|||||||||||||| ||| | | || ||||| ||| || |||| |||||| ||| |
Sbjct 712 GAGTAGATCTCCGGCGAA-ACGTTCTGAGATTCGTAACGCTGATTCGTGTGGCAGTTCGG 770
Query 754 TGAATTCGAGTAACAATAGACCTGGGAAA-TTTGT-ATCTG-TTCCTGCAACAGATAAGG 810
| ||||||||||| |||||||| |||||| ||||| | | | |||||||||| ||||||
Sbjct 771 TAAATTCGAGTAATAATAGACC-GGGAAAGTTTGTTA-C-GATTCCTGCAACGGATAAG- 826
Query 811 CTTTAAGTAACAATGGAGATG--GATCTGTGAAACGGATTACTGTGAAGAGAAAC---G- 864
| ||||||||| ||| | | | || ||||||||||| || ||||||||| |
Sbjct 827 ----A-GTAACAATGTAGA-GCCGTTA-GTAAAACGGATTACGGTTAAGAGAAACATCGG 879
Query 865 ------TTGGA-AA-AGCTGCGTCTCCGAGGTCTCAGTCACCGGCGAGAGCGGCGAGTCA 916
||| | || ||| |||||||||||||| | || ||||| ||||||| || | |
Sbjct 880 AGACGCTTGCAGAATAGCGGCGTCTCCGAGGTCAAAATCTCCGGCTAGAGCGGGGAATAA 939
Query 917 -G--CCTTCGCC--GTCGAAGCTTAGCCG-GAAAA-CGGAGCATTCTCCGTATAGGAGGA 969
| || |||| | || || | | | |||| |||| || ||||| ||||| || |
Sbjct 940 TGTTCCCTCGCTAAGCCGGAG-TAATTCAAGAAAGGCGGAACAATCTCCCTATAGAAGAA 998
Query 970 ATCCATTGGGTGAGATTGATCCAAAC 995
|||||||||| |||||||||| ||||
Sbjct 999 ATCCATTGGGAGAGATTGATCAAAAC 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96987452940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5