BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493708
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37350.1 | Symbols: | Serine/threonine-protein kinase Rio1 ... 1500 0.0
AT2G24990.1 | Symbols: | Serine/threonine-protein kinase Rio1 ... 1360 0.0
> AT5G37350.1 | Symbols: | Serine/threonine-protein kinase Rio1
| chr5:14792984-14796027 FORWARD LENGTH=1848
Length=1848
Score = 1500 bits (812), Expect = 0.0
Identities = 856/878 (97%), Gaps = 0/878 (0%)
Strand=Plus/Plus
Query 759 AGGCTTCATGCAGCAGGAATTAGGTGTCCAGCTGTTATACTTCTACGCCTTCATGTTCTA 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 AGGCTTCATGCAGCAGGAATTAGGTGTCCAGCTGTTATACTTCTACGCCTTCATGTTCTA 830
Query 819 GTCATGGAGTTTATAGGGAGGGATGGTTGGGCTGCACCGCGTCTCAAGGATGCTGCATTA 878
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 831 GTCATGGAGTTTATAGGGAGGGATGGTTGGGCTGCACCGCGTCTCAAGGATGCCGCATTG 890
Query 879 TCTCTGGACAAGTTGCGCGAGTGCTACCTAGAGTTGATAATCCAAATGCGAGTATTATAT 938
||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 891 TCTCTGGACAAGTTGCGCGAGTGTTACTTAGAGTTGATAATTCAAATGCGAGTATTATAT 950
Query 939 CAGAAGTGTAAATTGGTGCATGGGGATCTTAGTGAGTATAACATACTATATTTTGAGGGG 998
|||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 951 CAGAAGTGCAAATTAGTGCATGGGGATCTCAGTGAGTATAACATACTTTATTTTGAAGGG 1010
Query 999 CACCTTTATATAATTGATGTTTCTCAATCTGTGGATCTGGACCATCCTCTTGCACTCAAC 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 CACCTTTATATAATTGATGTTTCTCAATCTGTGGATCTGGACCATCCTCTTGCACTCAAC 1070
Query 1059 TTTCTACGGGAAGATTGTGACCATGTCTCGGATTTTTTCAAAAAACATGGTGTGGCTGTT 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 TTTCTACGGGAAGATTGTGACCATGTCTCGGATTTTTTCAAAAAACATGGTGTGGCTGTT 1130
Query 1119 ATGACGATACGAGAGCTATTTGACTTCATAGTTGACCCGACAATTTCAGACGAAAATGTT 1178
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 ATGACAATACGAGAGCTATTTGACTTCATAGTTGACCCGACAATTTCAGACGAAAATGTT 1190
Query 1179 GATAGCTATTTGGAAGAGGTGCAACGAAAAGTTATAGAGCGAGGAGAGATATCTGTAGAG 1238
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 1191 GATAGCTATTTGGAAGAGGTCCAACGGAAAGTTATAGAGCGAGGAGAGATATCCGTAGAG 1250
Query 1239 GATGAAATCGCGGATTCAGTATTCATGAAGTCATACATACCGAAATCTCTGGATGCTGTG 1298
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GATGAAATCGCGGATTCTGTATTCATGAAGTCATACATACCGAAATCTCTGGATGCTGTG 1310
Query 1299 AACAACCCAGAGGCTGATGTAGCGAAGATAACAAGCGGGCAGGACACAGGAGACATGCTG 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 AACAACCCAGAGGCTGATGTAGCGAAGATAACAAGCGGGCAGGACACAGGAGACATGCTG 1370
Query 1359 TACCAAACGGTAACGGGGCTTAAGGATGCTCTTCCTAAAGTAGACGAGCAGCAAATAGAG 1418
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 TACCAAACGATAACGGGGCTTAAGGATGCTCTTCCTAAAGTAGACGAGCAGCAAATAGAG 1430
Query 1419 GTGAATGCTgaagaggaagaagaagaagaagaagacggaagtggagaagaaagcgaagaa 1478
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1431 GTGAATGCTGAAGAGGAAGAAGAAGAAGAGGAAGAGGGAAGTGGAGAAGAAAGCGAAGAA 1490
Query 1479 gagagtgaagaagaattgggtcctgaagacaagaaagctgcaaggaaagagcacaagaag 1538
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 GAGAGTGAAAAAGAATTGGGTCCTGAAGACAAGAAAGCTGCAAGGAAAGAGCACAAGAAG 1550
Query 1539 aaagtgaaagaGGAGAAACGTGAGTCCAGGAAGACGAAAACACCCAAATCTGTCAAGAAG 1598
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1551 AAAGTGAAAGAGGAGAAACGAGAGTCTAGGAAGACGAAAACACCCAAATCTGTCAAGAAG 1610
Query 1599 CGAAAGAAGAAAGTCTCTAAACCCCACAAGACTCGTTA 1636
||||| ||||||||||||||||||||||||||||||||
Sbjct 1611 CGAAAAAAGAAAGTCTCTAAACCCCACAAGACTCGTTA 1648
Score = 953 bits (516), Expect = 0.0
Identities = 583/615 (95%), Gaps = 6/615 (1%)
Strand=Plus/Plus
Query 23 CGAAAAACAAGTGATGGAGGAAGTAGTAGTAGTTGCAGAGCCACCACCGAAGATTACTAC 82
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 41 CGAAAAACAAGTGATGGAGGAAGTAGTGGTAGTTGCAGAGCCACCACCGAAGATTACTCC 100
Query 83 CGTTGTGGAATACGAAGAGGAGATTGAAGAAGAAGATGACGGCGACGATCTCTCGCTTTC 142
| |||||||||||||||| ||| || ||||| ||||| ||| ||||||||||||||
Sbjct 101 CTTTGTGGAATACGAAGAAGAGCTT---GAAGATGATGA---CGATGATCTCTCGCTTTC 154
Query 143 GTCAGATTCCGATATCGCTGAAGCTCTTGATTGGCTAGACGGTAAAGACGATGACGAACT 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 155 GTCAGATTCCGATATCGCTGAAGCTCTTGATTGGCTAGACGGTAAAGACGATGACGAGCT 214
Query 203 AATTGGTGGTGGCTTCTCTCTTCATGCTCGTCGTCCTAATGCTCACGGTGGACATGGTTC 262
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 AATTGGTGGTGGCTTTTCTCTTCATGCTCGTCGTCCTAATGCTCACGGTGGACATGGTTC 274
Query 263 ACGCCCTAACTCTAGTGCTCTTCAGCCTATATCAAATAAAGCCCAGAAGCTTACTAGTCA 322
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 275 ACGCCCTAACTCTAGTGCTCTTCAGCCTATTTCAAATAAGGCCCAGAAGCTTACTAGTCA 334
Query 323 TGTTCGTGCTTCTCCTTTGGAGGGATGGGAAGGAAGAGTTAAAGTTGGGATGTCGAATTC 382
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 CGTTCGTGCTTCTCCTTTGGAGGGATGGGAAGGAAGAGTTAAAGTTGGGATGTCGAATTC 394
Query 383 TGTGACAACTGCGATTCGTGGAAGTCTAAGAGAGACAGAGATTGGGAGAAGTAGGAACAC 442
||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||
Sbjct 395 TGTGACAACTGCGATTCGTGGAAGTCTTAGAGATACAGAAATTGGGAGAAGTAGGAATAC 454
Query 443 TGATAAAGCGGACAGGGCAACAGTTGAACAGGCTCTTGATCCAAGGACGCGTATGGTTTT 502
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 455 TGATAAAGCGGACCGGGCAACTGTTGAACAGGCTCTTGATCCAAGGACGCGTATGGTATT 514
Query 503 GTTTAGAATGCTTAATCGGGGTGTGTTTAATGATGTTAATGGCTGTATTTCCACAGGCAA 562
|||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 515 GTTTAGAATGCTTAATAGGGGTGTGTTTAACGATGTTAATGGCTGTATCTCGACAGGCAA 574
Query 563 AGAAGCTAATGTTTATCATGCCACGAAATCTGACGGTTCGGAACTTGCAATAAAAGTGTA 622
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 575 AGAAGCAAATGTTTATCATGCCACAAAATCTGACGGTTCGGAACTTGCAATAAAAGTGTA 634
Query 623 CAAGACATCGGTTCT 637
||||||||| |||||
Sbjct 635 CAAGACATCTGTTCT 649
Score = 148 bits (80), Expect = 1e-34
Identities = 89/93 (96%), Gaps = 1/93 (1%)
Strand=Plus/Plus
Query 639 GAGATTACCGTTTTAGATATGGCTACTGTCGTCACAATCCCCCGCAAGATGGTGAAGACA 698
|||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 682 GAGATTACCGTTTTAGATATGGCTACTGTCGTCACAATCCTC-GAAAGATGGTGAAGACA 740
Query 699 TGGGCTGAAAAAGAACAGAGAAATCTTAAGAGG 731
|||||||||||||||||||||||||| ||||||
Sbjct 741 TGGGCTGAAAAAGAACAGAGAAATCTCAAGAGG 773
> AT2G24990.1 | Symbols: | Serine/threonine-protein kinase Rio1
| chr2:10625214-10628299 FORWARD LENGTH=1685
Length=1685
Score = 1360 bits (736), Expect = 0.0
Identities = 844/894 (94%), Gaps = 15/894 (2%)
Strand=Plus/Plus
Query 759 AGGCTTCATGCAGCAGGAATTAGGTGTCCAGCTGTTATACTTCTACGCCTTCATGTTCTA 818
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 792 AGGCTTCATGCAGCTGGAATTAGGTGTCCAGCTGTTATACTTCTTCGCCTTCATGTGCTA 851
Query 819 GTCATGGAGTTTATAGGGAGGGATGGTTGGGCTGCACCGCGTCTCAAGGATGCTGCATTA 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 GTCATGGAGTTTATAGGGAGGGATGGTTGGGCTGCACCGCGTCTCAAGGATGCTGCATTA 911
Query 879 TCTCTGGACAAGTTGCGCGAGTGCTACCTAGAGTTGATAATCCAAATGCGAGTATTATAT 938
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 912 TCTCTAGACAAGTTGCGCGAGTGCTACCTAGAGTTGATAATTCAAATGCGAGTATTATAT 971
Query 939 CAGAAGTGTAAATTGGTGCATGGGGATCTTAGTGAGTATAACATACTATATTTTGAGGGG 998
|||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 972 CAGAAGTGCAAATTGGTGCATGGAGATCTCAGTGAGTATAACATACTTTATTTTGAGGGG 1031
Query 999 CACCTTTATATAATTGATGTTTCTCAATCTGTGGATCTGGACCATCCTCTTGCACTCAAC 1058
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 CACCTTTACATAATTGATGTTTCTCAATCTGTGGATCTGGACCATCCTCTTGCACTCAAC 1091
Query 1059 TTTCTACGGGAAGATTGTGACCATGTCTCGGATTTTTTCAAAAAACATGGTGTGGCTGTT 1118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 TTTCTACGGGAAGATTGTGACCATGTCTCGGATTTTTTCAAAAAACATGGTGTGGCTGTC 1151
Query 1119 ATGACGATACGAGAGCTATTTGACTTCATAGTTGACCCGACAATTTCAGACGAAAATGTT 1178
||||| ||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1152 ATGACAATACGGGAGCTATTTGACTTCATAGTTGACCCGGCAATTACAGACGAAAATGTT 1211
Query 1179 GATAGCTATTTGGAAGAGGTGCAACGAAAAGTTATAGAGCGAGGAGAGATATCTGTAGAG 1238
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1212 GATAGCTATTTGGAAGAGGTCCAACGAAAAGTTATAGAGCGAGGAGAGATATCCGTAGAG 1271
Query 1239 GATGAAATCGCGGATTCAGTATTCATGAAGTCATACATACCGAAATCTCTGGATGCTGTG 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 GATGAAATCGCGGATTCAGTATTCATGAAGTCATACATACCGAAATCTCTGGATGCTGTG 1331
Query 1299 AACAACCCAGAGGCTGATGTAGCGAAGATAACAAGCGGGCAGGACACAGGAGACATGCTG 1358
|||||||| |||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 1332 AACAACCCTGAGGCTGACGTGGCTAAGATAACAAGCGGGCAGGACACAGGAGACATGCTA 1391
Query 1359 TACCAAACGGTAACGGGGCTTAAGGATGCTCTTCCTAAAGTAGACGAGCAGCAAATAGAG 1418
||||||||| ||||||||||||||||||||||||||||| |||| |||||| ||||||||
Sbjct 1392 TACCAAACGATAACGGGGCTTAAGGATGCTCTTCCTAAAATAGAAGAGCAGAAAATAGAG 1451
Query 1419 GTGAATGCTgaagag---gaaga--a-g-a-ag-aagaagaagacgga-a--gtggagaa 1466
||||||| ||||||| ||||| | | | || |||||||||||||| | ||| ||||
Sbjct 1452 GTGAATGATGAAGAGAAAGAAGAGGAAGGAGAGGAAGAAGAAGACGGAGAAAGTGAAGAA 1511
Query 1467 gaaagcga--a-gaagagagtgaagaagaattgggtcctgaagacaagaaagctgcaagg 1523
| ||| || | ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1512 GGAAGTGAGGAAGAAGAGAGTGAAGAAGAATTGGGTCATGAAGACAAGAAAGCTGCAAGG 1571
Query 1524 aaagagcacaagaagaaagtgaaagaGGAGAAACGTGAGTCCAGGAAGACGAAAACACCC 1583
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1572 AAAGAGCACAAGAAGAAAGTGAAAGAGGAGAAACGAGAGTCTAGGAAGACGAAGACACCC 1631
Query 1584 AAATCTGTCAAGAAGCGAAAGAAGAAAGTCTCTAAACCCCACAAGACTCGTTAA 1637
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1632 AAATCTGTCAAGAAGCGAAAGAAGAAAGTCTCTAAACCACACAAGACTCGTTAA 1685
Score = 843 bits (456), Expect = 0.0
Identities = 557/605 (92%), Gaps = 9/605 (1%)
Strand=Plus/Plus
Query 36 ATGGAGGAAGTAGTAG-TAGTTGCAGAGCCACCACCGAAGATTACTACC-GTTGTGGAAT 93
|||||||||||||| | |||| ||||||||||||| | |||| || || || || ||||
Sbjct 72 ATGGAGGAAGTAGT-GTTAGTAACAGAGCCACCACCCACGATTCCT-CCGGTAGTAGAAT 129
Query 94 ACGAAGAGGAGATTG-AAGAAGAAGATGACGGCGACGATCTCTCGCTTTCGTCAGATTCC 152
||||||| ||| | | || || || |||| |||||||||||| ||||| || ||||||
Sbjct 130 ACGAAGA--AGA--GCATGACGATGACGACGACGACGATCTCTCTCTTTCATCGGATTCC 185
Query 153 GATATCGCTGAAGCTCTTGATTGGCTAGACGGTAAAGACGATGACGAACTAATTGGTGGT 212
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||
Sbjct 186 GATATCGCTGAAGCTCTTGATTGGCTCGACGGAAAAGACGATGACGAGCTAATAGGTGGT 245
Query 213 GGCTTCTCTCTTCATGCTCGTCGTCCTAATGCTCACGGTGGACATGGTTCACGCCCTAAC 272
||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 246 GGCTTTTCCCTCCATGCTCGTCGTCCTAATGCTCACGGTGGACATGGTTCACGTCCTAAC 305
Query 273 TCTAGTGCTCTTCAGCCTATATCAAATAAAGCCCAGAAGCTTACTAGTCATGTTCGTGCT 332
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TCTAGTTCTCTTCAACCTATATCAAATAAAGCCCAGAAGCTTACTAGTCATGTTCGTGCT 365
Query 333 TCTCCTTTGGAGGGATGGGAAGGAAGAGTTAAAGTTGGGATGTCGAATTCTGTGACAACT 392
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 TCTCCTTTAGAGGGATGGGAAGGAAGAGTTAAAGTTGGGATGTCGAATTCTGTGACAACT 425
Query 393 GCGATTCGTGGAAGTCTAAGAGAGACAGAGATTGGGAGAAGTAGGAACACTGATAAAGCG 452
||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 426 GCGATTCGTGGAAGTCTTAGAGATACAGAAATTGGGAGAAGTAGGAATACTGATAAAGCT 485
Query 453 GACAGGGCAACAGTTGAACAGGCTCTTGATCCAAGGACGCGTATGGTTTTGTTTAGAATG 512
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 486 GACCGGGCAACAGTTGAACAGGCTCTTGATCCAAGGACTCGTATGGTTTTGTTTAGAATG 545
Query 513 CTTAATCGGGGTGTGTTTAATGATGTTAATGGCTGTATTTCCACAGGCAAAGAAGCTAAT 572
||||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 546 CTTAACCGGGGTGTGTTTAACGATGTTAATGGATGTATTTCGACAGGCAAAGAAGCTAAT 605
Query 573 GTTTATCATGCCACGAAATCTGACGGTTCGGAACTTGCAATAAAAGTGTACAAGACATCG 632
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 GTTTATCATGCCACAAAATCTGACGGTTCGGAACTTGCAATAAAAGTGTACAAGACATCT 665
Query 633 GTTCT 637
|||||
Sbjct 666 GTTCT 670
Score = 159 bits (86), Expect = 6e-38
Identities = 91/93 (98%), Gaps = 1/93 (1%)
Strand=Plus/Plus
Query 639 GAGATTACCGTTTTAGATATGGCTACTGTCGTCACAATCCCCCGCAAGATGGTGAAGACA 698
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 703 GAGATTACCGTTTTAGATATGGCTACTGTCGTCACAATCCCCGG-AAGATGGTGAAGACA 761
Query 699 TGGGCTGAAAAAGAACAGAGAAATCTTAAGAGG 731
|||||||||||||||||||||||||||||||||
Sbjct 762 TGGGCTGAAAAAGAACAGAGAAATCTTAAGAGG 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83332904700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5