BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493710
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37360.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1788 0.0
> AT5G37360.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane, chloroplast;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth
stages; Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink). | chr5:14805229-14808236 REVERSE LENGTH=1261
Length=1261
Score = 1788 bits (968), Expect = 0.0
Identities = 1182/1279 (92%), Gaps = 40/1279 (3%)
Strand=Plus/Plus
Query 1 AAACGATGATGCATCAAGAAACAGCTTCGACTC--CTACATTCATCT-TCTAAAAGATCT 57
|||||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||
Sbjct 1 AAACGATGATGCCTCAAGAAACAGCTTCGACTCTACTACATTCAT-TGTCTAAAAGATCT 59
Query 58 TTCGATTGTTCACGAA-TATTATCTGATTTTG-TCATAACACATAAAGAAATTGA--ATA 113
|||| ||||||||||| | || ||||| |||| || |||||| || | |||||| | |
Sbjct 60 TTCGGTTGTTCACGAATTGTT-TCTGAGTTTGCCCA-AACACA-AACG-AATTGAGGAAA 115
Query 114 ACTGAAAGATGGcttc---ttcttcttcttctcttagtcttcttcaacctctccacagtc 170
|||||||||||||||| ||||||||||||| ||||||| || |||||||| || ||||
Sbjct 116 ACTGAAAGATGGCTTCTTGTTCTTCTTCTTCTATTAGTCTCCTCCAACCTCTTCATAGTC 175
Query 171 tctcttcttccactctcttcttttctcAGCCAAGTTTTCATTTTTCGTCATCCCTTAAAC 230
|||||||||||||||| |||||||||||||||||||||||||||||||| || || ||||
Sbjct 176 TCTCTTCTTCCACTCTTTTCTTTTCTCAGCCAAGTTTTCATTTTTCGTCCTCTCTAAAAC 235
Query 231 CTCACAAGTCCAAAAGGCTCAATCTTTCGAAATCCTTGACTCTCCGATTTGCTCTTACGG 290
|| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CTAATAAGTCCAAAAGGCACAATCTTTCGAAATCCTTGACTCTCCGATTTGCTCTTACGG 295
Query 291 AATCAGATTCTACTAAACCTCTAG-AA-A-CAGAACCAAGTTCCAAATCCCTTCTCCTAC 347
|||||||||||||||||||||||| || | |||||||||||||||||||||||| ||||
Sbjct 296 AATCAGATTCTACTAAACCTCTAGAAATAGAAGAACCAAGTTCCAAATCCCTTCTTCTAC 355
Query 348 AACTATCTAAGTGTTTTGATCTTCCATCAGATTACTTCCAGCAGCTACCAAATGATCTTC 407
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 AACTCTCTAAGTGTTTTGATCTTCCATCAGATTACTTCCAGCAGCTACCAAATGATCTTC 415
Query 408 GTCTCGATTTGAATGATGCTGCTTTTGATCTCTCCAATGGACCCGTTATCGATGAGTGTG 467
||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 416 GTCTCGATTTGAATGATGCGGCTTTTGATCTCTCCAATGGACCTGTCATCGATGAGTGTG 475
Query 468 GTCAAGAGCTTGGGGAGACCTTACTAAATCTGTCCCGTGCTTGGGAACAAGCTGACACAT 527
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 476 GTCAAGAGCTTGGGGAGACCTTACTGAATCTGTCTCGTGCTTGGGAACAAGCTGACACAT 535
Query 528 CAACTTCTCGTAGTTTAGTGGAGAAACTTCCCGAAGTGGAAAGTTCATTAACAGATGGTG 587
||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||
Sbjct 536 CAACTTCTCGTAGTTTAGTGGAGAAACTTCCCGAACTGGAAATTTTATTAACAGATGGTG 595
Query 588 CCAGATCAGCCTTTGGGAGGCGTTTGATATCTGCAGGAAAAAGGTTCCAGGGCATGGGGC 647
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 596 CCAGATCAGCCTTTGGGAAGCGTTTGATATCTGCAGGAAAAAGGTTCCAGGGCATGGGAC 655
Query 648 AATATGGTAAAGGTGAATTACAGAAGATTGCTAAAGCGATGATCACAACTGGAGGGGTTC 707
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 656 AATATGCCAAAGGTGAATTACAGAAGATTGCGAAAGCGATGATCACAACTGGAGGGG-TC 714
Query 708 -TATCTGCAAATACATCATCTGATTCAGTCAGTAATGAATCTAAGTCAGGAACAAGGATG 766
|||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 715 TTATCTGCAAAAACATCATCTGTTTCAGTCAGCAATGAATCTAAGTCAGGAACAAGGATG 774
Query 767 TTTAAGTTTGGGGAGCTTCAGGTTGCTGTGACTCCTCAGAAAGCCTACGCCGGAGCTGCC 826
|||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 775 TTTAAGTTTGGGGAGCTTCAAGTTGCTGTGACTCCAGAGAAAGCCTACACCGGAGCTGCC 834
Query 827 ATTGCATTCATCTATGGGATACTTTCATGGCAAATCAGTCAAGGGATCCAAAGCATACCA 886
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 ATTGCGTTCATCTACGGGATACTTTCATGGCAAATCAGTCAAGGGATCCAAAGCATACCA 894
Query 887 GAGAACTCATTGCAGTATGCAAATGACAATGCATTGCTAATCGGAAAGTCTCTAAGAGGG 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GAGAACTCATTGCAGTATGCAAATGACAATGCATTGCTAATCGGAAAGTCTCTAAGAGGG 954
Query 947 TCTCTTCTAGCTTTGTTTTATGCGTCAACCGTCTTGTCAGGCTTCACAACAGTTGGGCTT 1006
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 955 TCTCTTCTAGCTCTGTTTTATGCGTCAACCGTCTTGTCAGGCTTCACAACAGCTGGGCTT 1014
Query 1007 ATCCTACTCGCTAAGGAGCTTTCATCAGAAAAAGAGTGAATTCATAATCCTTCATGTGTG 1066
||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1015 ATCCTACTCGCTAAGCAGCTTTCATCAGAAAAAGAGTGAATTCATAATCCTTCAGGGGTG 1074
Query 1067 GTCTCTATTACTCTCATGTGTATAGTGCCAAATATTGAATATT--CAATAGTAAGATTTA 1124
||||||||||||||||||| | ||||||||||||| || ||| ||||||||| ||||
Sbjct 1075 GTCTCTATTACTCTCATGT--ACAGTGCCAAATATTCAA-ATTTACAATAGTAA-ATTTT 1130
Query 1125 -CTACTTTTTCTGTCTCTGTGCGTTAAACTATGGAACGTGTTGACTGTTGAGTGTATATA 1183
||||||| ||||||| || ||||||||||||||| ||| | | | ||||||||||
Sbjct 1131 TCTACTTTCTCTGTCTATG--CGTTAAACTATGGAA--TGT-G--T-T-GAGTGTATAT- 1180
Query 1184 TTCTTATAGAGAAAACGAAATATCTTTGTTACGAATAATTGAAGTTT-CTCAAGCAATGC 1242
| ||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||
Sbjct 1181 T-CTTATAGAGAAAACGAAATATCTTTGTTATGAATAATTGAAGTTTGC-CAAGCAATGA 1238
Query 1243 GAGAGTTTGATGTTTGATG 1261
||| |||||||||||||||
Sbjct 1239 GAGTGTTTGATGTTTGATG 1257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61997673075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5