BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493716
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37380.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1127 0.0
> AT5G37380.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr5:14816759-14819287 REVERSE LENGTH=1862
Length=1862
Score = 1127 bits (610), Expect = 0.0
Identities = 822/917 (90%), Gaps = 44/917 (5%)
Strand=Plus/Plus
Query 644 CCCAGAGGAACAATCAGCCAGCCCAGAAGAACAATCCGCCGGCCCAGAAGAACAATCCGC 703
|||||| || ||||| ||| |||||||||| ||||||||| ||||||||||||||||| |
Sbjct 823 CCCAGAAGACCAATCCGCCTGCCCAGAAGACCAATCCGCCAGCCCAGAAGAACAATCCTC 882
Query 704 CGACCCAGAAGAACAATCCACAAAAGCCAGTTGGTAATACACAGAAAACAGGACAG-ACG 762
||||||| ||||||||||| |||||||||||||||| ||||||||||||||||| | ||
Sbjct 883 CGACCCAAAAGAACAATCCGCAAAAGCCAGTTGGTACTACACAGAAAACAGGAC-GTACT 941
Query 763 GA-ACATCACACAACAACACCAAGTTCATTTGCTGCATCTGCATCATCAGACCAATCAAA 821
|| | |||||||||||||||||| |||||| ||||||||| |||||||||||||||||
Sbjct 942 GATA-ATCACACAACAACACCAAACTCATTTACTGCATCTGGGTCATCAGACCAATCAAA 1000
Query 822 GTCGAATACTTTCTGGACAGTCTGCAGGAGATGCATGATGCAGTACGAGTATCTAAGATT 881
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1001 GTCGAATACTTTCTGGACAGTCTGCAGGAGATGCATGATGCAGTACGAGTATCTAAGAGT 1060
Query 882 TTATGTCAACTGTAACCTTCGGTGTCCTAATTGTCTACAGTCGTATTTGGCAGTAGAAGT 941
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1061 TTATGTCAACTGTAACCTTCGGTGTCCTAATTGTCTACAGTCCTATTTGGCAGTAGAAGT 1120
Query 942 CCCTAAACCAGGTATATCAAGCCGTTGGAGTAGTTTCAGCCGTCTAAAGCGAAACCTGGA 1001
||||||||||||||| ||||||||||||||||||| |||||| | || |
Sbjct 1121 CCCTAAACCAGGTATTTCAAGCCGTTGGAGTAGTTGCAGCCG--T----------CT--A 1166
Query 1002 TCCGAAGTCAGCTGCGAACCACAACACTACTTCAGGTTTATTTAATAACTCCAAGTGGAC 1061
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1167 ----AAGTCAGCTGCAAACCACAATACTACTTCAGGTTTATTTAATAACTCCAAGTGGAC 1222
Query 1062 ATTCTCAAGAACCAGCAGTGCAGCTCATGCTGCTAGTGTGGTTCAACAGGCTTATGAGAA 1121
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1223 ATTCTCAAGAACCAGCAGTGCAGCTCATGCTGCAAGTGTGGTTCAACATGCTTATGAGAA 1282
Query 1122 GGTCAAGAAAGAACGCGAGCAGGCGAAAGCAACCGCGAGAAGAGAAAAGAAGAACGCCAA 1181
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1283 GGTAAAGAAAGATCGCGAGCAGGCGAAAGCAACCGCGAGAAGAGAAAAGAAGAATGCCAA 1342
Query 1182 AAGGAAGAGCACAACTGATTCGTCTGCTTCTGGTAGTTCGCTTaaaaaaaGGAAAGTTCG 1241
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1343 AAGAAAGAGCACAACTGATTCGTCTGCTTCTGGTAGTTCGCTTAAAAAGAGGAAAGTTTG 1402
Query 1242 TGGAGAAAATGATGTTGGTTGCTCTGGTGGAAGAAAGGTCACTTACTGTGTGACTGGTGA 1301
| ||||| |||| | ||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 1403 TTTAGAAACTGATATCGGTTGCTCTAGTGGAAGAGAGGTCACTTACCGTGTGACTGGTGA 1462
Query 1302 AACCGGAAAAAACATGAGAAAGTTAGAACATGAAACCAAAGAGAGAT-CGGACAAGTTCT 1360
|| ||||||||||||| ||||||||||||||| |||||||||||| | |||||||||| |
Sbjct 1463 AAACGGAAAAAACATGGGAAAGTTAGAACATGGAACCAAAGAGAG-TGCGGACAAGTTGT 1521
Query 1361 CTCCTAGAAGAACCCAGAGAAATATTAGCAAGGAGGATGT-A-AAG-----T-----CGC 1408
||| |||||||||||||||||| |||||||||||| |||| | ||| | |||
Sbjct 1522 CTCTTAGAAGAACCCAGAGAAAGATTAGCAAGGAGAATGTTACAAGAGAGGTAAAGTCGC 1581
Query 1409 GTTAGCATTCTGACTTGGTTGAGTGAGGTTTGAGTTATGCAGGCATAATTGTGATTGATG 1468
|||||||||||||| |||||||||||||| |||||||||||||||||| | |||||||
Sbjct 1582 GTTAGCATTCTGACCCCGTTGAGTGAGGTTTAAGTTATGCAGGCATAATT-T-ATTGATG 1639
Query 1469 GATTCTCCAGGCTATAACCAGTCACTAGGATATATTTTGTAAGTTGGGTCATTCGGTAAT 1528
|||||||||||||||||||||||| || ||| ||| ||||||||||||||||||||||
Sbjct 1640 GATTCTCCAGGCTATAACCAGTCA-TA---TAT-TTT-GTAAGTTGGGTCATTCGGTAAT 1693
Query 1529 ATTTGGGTTCTAACATT 1545
||| ||||||||||||
Sbjct 1694 CTTTTGGTTCTAACATT 1710
Score = 913 bits (494), Expect = 0.0
Identities = 545/570 (96%), Gaps = 2/570 (0%)
Strand=Plus/Plus
Query 154 ATGGAGTGCAACAAAGACGAGGCGGCAAGGGCGAAAGAAATTGCAGAGAACAAGTTCAAA 213
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 291 ATGGAGTGCAACAAAGACGAGGCGACGAGGGCGAAAGAAATTGCAGAGAACAAGTTCAAA 350
Query 214 ATGAAAGACATTGCTGGGGCCAAGAAATTTGCCTTGAAAGCTCAAAATCTGTATCCAGAG 273
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 351 ATGAAAGACATTGCCGGGGCTAAGAAATTTGCCTTGAAAGCTCAAAATCTGTATCCAGAG 410
Query 274 ATAGAAGGTGTTTCTCAGATGTTAGCAACCTTGGATGTGTATATTGCTGCAGAAAACAAA 333
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 411 ATAGAAGGTGTTTCTCAGATGTTAGCAACCTTGGATGTGTATATCGCTGCAGAAAACAAA 470
Query 334 GTAAACGAGGATGTAGACTGGTATGGAATACTCAATGCAAGTCCGCGCGATGATGATGAA 393
|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 471 GTAAACGAGGATGTCGACTGGTATGGAATACTCAATGCAAGTCCTCGGGATGATGATGAA 530
Query 394 ACGTTGAAGAGAAAGTACAGGAAGCTTGCTCTAATGCTCCACCCGGATAAAAACAAGTCT 453
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 531 ACGTTGAAGAGAAAGTACAGGAAGCTTGCTCTAATGCTTCACCCCGATAAAAACAAGTCT 590
Query 454 ATAGGAGCTGAAGGAGCATTCAAACATGTTTCTGAAGCTTGGAAATTCTTGTCAGATAAG 513
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 ATAGGAGCTGAAGGGGCATTCAAACATGTTTCTGAAGCTTGGAAATTCTTGTCAGATAAG 650
Query 514 GAAAAGAGAGCAGCTTATGATCGTAGGAAAAGTTTGCACTCAGTTTATCAGAAGGTCACA 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 651 GAAAAGAGAGCAGCTTATGATCGTAGGAAAAGTTTGCACTCAGTTTATCAGAAGGTCTCA 710
Query 574 GTTTCGTCTTCTAATAACGGTTTCTGCAATTTCGCCAAGACTACTTTCACTACAAATGCG 633
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 711 GTTTCATCTTCTAATAACGGGTTCTGCAATTTCGCCAAGACTACTTTCACTACAAATGCA 770
Query 634 AGGACGACGACCCAGAGGAACAATCAGCCAGCCCAGAAGAACAATCCGCCGGCCCAGAAG 693
||||||||||||| ||| ||||||| ||| |||||||||| ||||||||| |||||||||
Sbjct 771 AGGACGACGACCCCGAGAAACAATCCGCCGGCCCAGAAGACCAATCCGCCAGCCCAGAAG 830
Query 694 AACAATCCGCC-GACCCAGAAGAACAATCC 722
| ||||||||| | ||||||||| ||||||
Sbjct 831 ACCAATCCGCCTG-CCCAGAAGACCAATCC 859
Score = 230 bits (124), Expect = 4e-59
Identities = 135/140 (96%), Gaps = 2/140 (1%)
Strand=Plus/Plus
Query 10 GAAACGCAACTGGTGTGAGTGATTCTAGCGTTTTCTCTCGTCGCATCTTCT-TTCTTCAT 68
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1 GAAACGCAACTGGTGTGAGTGATTCTAGCGTTTTCTCTCGTCGCATCTTCTCTT-TTCAT 59
Query 69 CTTTGACCCTAAAACTCTGCAAATCTCGAGTTTTCAGGTTTAATCGATTTTGATGTTGTT 128
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 60 CTTTGACCCTAAAACTTTGCAAATCTCGAGCTTTCAGGTTTAATCGATTTTGATGTTGTT 119
Query 129 GCTAATCCCGTAGGAATCAG 148
||||||||||||| ||||||
Sbjct 120 GCTAATCCCGTAGAAATCAG 139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76254627855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5