BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493723
Length=1037
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37475.1 | Symbols: | Translation initiation factor eIF3 su... 1578 0.0
> AT5G37475.1 | Symbols: | Translation initiation factor eIF3
subunit | chr5:14866057-14868741 REVERSE LENGTH=1141
Length=1141
Score = 1578 bits (854), Expect = 0.0
Identities = 982/1042 (94%), Gaps = 15/1042 (1%)
Strand=Plus/Plus
Query 1 AAGAGAAAACCCTAAAATCCATCTTCGTTGTCGTTCCGTCTGCTTCAACATCGGAAAGTT 60
||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1 AAGAGAAAAACCTAAAATCCATCTTCGTTGTCGTTTCGTCTGCTTC-ACATCGGAAAG-C 58
Query 61 TTCACCTTTTTCG-TTTTCGTGGTGGCGATTTCTATTCTCCGGCTGAAACCTACCTTCAG 119
| || |||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TACATCTTTTTCGTTTTTTGTGGTGGCGATTTCTATTCTCCGGCTGAAACCTACCTTCAG 118
Query 120 GATTCAGCCTTTCTCTGGTTTTCAGTTGGATTCAGATAGCAGCTCATACTTGTTCTAGAT 179
||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 119 GATTCAGCCTTTCTCAGGTTTTCAGTTGGATTCAGATAGCAGCTTGTACTTCTTCTAGAT 178
Query 180 ACTCGGTAACAAATATGGATGACTGGGAGGCCGAGGATTTTCAACCACTT-CCTGCAAAA 238
| |||| ||| |||||||||| |||||||||||||| |||||||||||| ||| |||||
Sbjct 179 AATCGGCGACACATATGGATGATTGGGAGGCCGAGGACTTTCAACCACTTCCCT-CAAAA 237
Query 239 GTTGAACTGAAAAGTAATTGGGATGATGAGGATGTGGATGAGAATGATATCAAGGACTCG 298
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GTTGAACTGAAAAGTAACTGGGATGATGAGGATGTGGATGAGAATGATATCAAGGACTCG 297
Query 299 TGGGAGGAGGAAGATGTATCTGCTCCGCCACCTGTAGTAAAGCCTGCTTCTGAGAAGGCT 358
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 298 TGGGAGGAGGAAGATGTATCTGCTCCGCCACCTATAGTAAAGCCTGCTTCTGAGAAGGCT 357
Query 359 CCAAAGAAAGCAGCAGTAAAAGCTGTTGAAAAGAAGGTTAAAACTGTTGAAGCTCCAAAA 418
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 358 CCAAAGAAACCAGCAGTAAAAGCTGTTGAAAAGAAGGTTAAAACTGTTGAAGCTCCGAAA 417
Query 419 GGATCATCAAGGGAAGAACCTCTAGATCCTATTGCTGAGAAACTTCGCATGCAGAGGCTC 478
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GGAACATCAAGGGAAGAACCTCTAGATCCTATTGCTGAGAAACTTCGCATGCAGAGGCTT 477
Query 479 GTGGAGGAAGCTGATTACCAGGCAACTGCTGAACTCTTTGGAGTAAAGACTGAAGAGAAA 538
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 478 GTAGAGGAAGCTGATTACCAATCAACTGCTGAACTCTTTGGAGTAAAGACTGAAGAGAAA 537
Query 539 AGCGTCGATATGTTAATTCCTAAGTCTGAAAGCGATTTCTTGGATTATGCTGAGTTGATA 598
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 538 AGCGTCGATATGTTAATTCCGAAGTCTGAAAGCGATTTCTTGGATTATGCTGAGTTGATA 597
Query 599 TCTCAGAGACTTGTACCATTTGAGAAAAGTTTTCACTATATTGGGCTACTCAAAGCAGTG 658
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 598 TCTCAGAGACTTGTACCATTTGAGAAAAGCTTTCACTATATCGGGCTACTCAAAGCAGTG 657
Query 659 ATGAGACTTTCTGTGGCGAATATGAAAGCAGCAGATGTTAAAGACGTTGCTTCGTCCATT 718
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATGAGACTTTCTGTGGCTAATATGAAAGCAGCAGATGTTAAAGACGTTGCTTCGTCCATT 717
Query 719 ACAGCTATAGCAAATGAAAAATTGAAGGCGGAGAAAGAAGCTGCTGCTGGCAAAAAGAAG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ACAGCTATAGCAAATGAAAAATTGAAGGCGGAGAAAGAAGCTGCTGCTGGCAAAAAGAAG 777
Query 779 TCAGGTAAGAAGAAGCAACTTCATGTGGATAAGCCTGACGATGATCTTGTTGGGGGTCCT 838
|||||||||||||| ||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct 778 TCAGGTAAGAAGAAACAACTTCATGTTGATAAGCCTGATGATGATCTTGTTTCGGGTCCT 837
Query 839 TATGATGCTATGGATGATGATGATTTCATGTGAGAAAATGGCA-TTTTGGAGATTGCATT 897
|||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 838 TATGATGCCATGGACGATGATGATTTCATGTGAGAAAATGGCAATTTTGGAGATTGCATT 897
Query 898 TCACCTCCTATAGGATTGTAACTGAGAAGAGGTTTAAATCTTCGGCGGTTTTTTGTTTAG 957
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 898 TTACCTCCTATAGGATTGTAACTGAGAAGAGGTTTAAATCGTCGGCGGTTTTTTGTTTTG 957
Query 958 TTATATACTGAATTCCAACAGTGTTCCTT-TTCTCGGTTTTCTGTGCTCAGTTTGATTTG 1016
| ||| ||||||| ||| |||||| || |||| | |||||| ||||| |||||||||
Sbjct 958 T-ATA--CTGAATTGCAAAAGTGTTT-TTCTTCT-G-TTTTCTTTGCTCGGTTTGATTT- 1010
Query 1017 AAAAATT-GTGTAACAAGATTT 1037
||||||| |||||| |||||||
Sbjct 1011 AAAAATTTGTGTAATAAGATTT 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50836956764
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5