BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493725
Length=1642
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37490.1 | Symbols: | ARM repeat superfamily protein | chr5... 1936 0.0
> AT5G37490.1 | Symbols: | ARM repeat superfamily protein | chr5:14887478-14889151
FORWARD LENGTH=1674
Length=1674
Score = 1936 bits (1048), Expect = 0.0
Identities = 1306/1430 (91%), Gaps = 19/1430 (1%)
Strand=Plus/Plus
Query 215 aaaaaaTGGGTTTTTTATGGAGAACGAGACTACGTGGAGCTAACGAGAAGAAGATAACTC 274
|||| ||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 262 AAAACATGGGTTTTTTATGGAGAACGAG---A--T----CTAACGAGAAGAAGATAACTC 312
Query 275 CGGTAATAAGCTGGCCGGAATCAGAACCGGAGTCAGAGATAACAATTCCACCGGAATTTC 334
|||| | || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 313 CGGTTTTGAGTTGGCCGGAATCAGAACCGGAGTCAGAGATAACAATTCCACCGGAGTTTC 372
Query 335 AATGTCCGATCTCAATCGATCTAATGAAAGATCCGGTAATAATCTCAACAGGCATTACTT 394
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 373 AATGTCCAATCTCGATCGATCTAATGAAAGATCCAGTAATAATCTCAACAGGCATTACTT 432
Query 395 ACGACCGCGAAAGCATCGAAACATGGATCAGTTCCGGGAACAAAACATGTCCAGTCACGA 454
||||||||| |||||||||||||||||||| ||| || ||||||||||||||||||||||
Sbjct 433 ACGACCGCGTAAGCATCGAAACATGGATCAATTCAGGCAACAAAACATGTCCAGTCACGA 492
Query 455 ACACTGTCTTAACCACGTTCGATCAAATCCCGAACCACACGATACGTAAGATGATTCAAG 514
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 493 ACACTGTCTTAACCACGTTCGATCAAATCCCAAACCACACGATTCGTAAGATGATTCAAG 552
Query 515 GATGGTGCGTGGAGAAAGGATCACCGTTGATTCAACGTATCCCAACGCCACGTGTCCCTT 574
|||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 553 GATGGTGCGTGGAGAAAGGATCGCCGTTGATTCAACGTATTCCGACGCCACGTGTCCCTT 612
Query 575 TAATGCCATGTGAGGTCTACGAGATTAGAAGAAAATTATCCTCTGCGACGCGGCGTGGGG 634
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 613 TAATGCCATGTGAGGTCTACGAGATTAGTAGAAAATTATCGTCTGCGACGCGGCGTGGGG 672
Query 635 ATTACGAGAAGTGTGGGGAGATTATTGCGAAGATTAAGAAATTAGGGGACGAGAGTGAGA 694
|||||||||| ||||||| |||||||| |||||||||||| |||||||| ||||||||||
Sbjct 673 ATTACGAGAAATGTGGGGTGATTATTGAGAAGATTAAGAAGTTAGGGGATGAGAGTGAGA 732
Query 695 AAAATCGGAAGTGTGTTAACGAAAACGGTGTCGGATTTGTTCTTTGTGATTGTTTCGAGA 754
||||||| ||||||||||| |||||| | ||||||| |||||||||||||||||||| |
Sbjct 733 AAAATCGAAAGTGTGTTAATGAAAACAGCGTCGGATGGGTTCTTTGTGATTGTTTCGACA 792
Query 755 AGTTCTCGGGAGATGAGAAATTAACGATTATGTTGAAGGAGATTTTGTCTCTGCTGATGT 814
|||||||||||||||||||||||||| |||||||||| |||||||||||| |||||| ||
Sbjct 793 AGTTCTCGGGAGATGAGAAATTAACGTTTATGTTGAATGAGATTTTGTCTTTGCTGACGT 852
Query 815 GGATGATTCCGATTGGGTCGGAGGGTATTTCGAAACTCGCGTCTGCGTC-TGCGTTTCAT 873
||||| |||||||||| | ||||||||||||||||||||||||||| | | | |||| |
Sbjct 853 GGATGTTTCCGATTGGTTTAGAGGGTATTTCGAAACTCGCGTCTGCGACAT-CATTTCGT 911
Query 874 TGCGTTGCGGGTTTGTTGAAGAGTACGGGCGATACCGTTCGTCAAAACGCTGCGTTT-TT 932
||||| |||||||||||||||||||||| ||| |||||||||||||||| |||||| ||
Sbjct 912 TGCGTGGCGGGTTTGTTGAAGAGTACGGATGATTCCGTTCGTCAAAACGCCGCGTTTATT 971
Query 933 GATGAAGGAGATTCTCTCATTAGACGAAACGCGAGTTCACGCGTTTGCGGTTGAGAACGG 992
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 972 -ATGAAGGAGATTCTCTCATTAGACGAAACGCGAGTTCACTCGTTTGCGGTTGAGAACGG 1030
Query 993 TGTCGCGGAGGCGTTAGTGAAGTTGATTCGCGATTCGGTTTCGTCTAGCGCGACAAACTC 1052
||||| || |||||||| ||||||||||||||||||||||||||||| | ||||| ||
Sbjct 1031 AGTCGCCGAAGCGTTAGTAAAGTTGATTCGCGATTCGGTTTCGTCTAGTTCAACAAAATC 1090
Query 1053 TTCGTTAATAGCGATTTATCAAATGGTGTTGCAAAAGCCTGAGATCGCGTCGGAGTTTCT 1112
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1091 TTCGTTGATAGCGATTTATCAAATGGTGTTGCAAAAGCCTGAAATCGCGTCGGAGTTTCT 1150
Query 1113 CGAAATCGGTCTAGTGAATCTAACGGTGGAGATGATCGTTGATGCTGAGAATAGCGTTTG 1172
|||||| ||| | |||| | ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1151 CGAAATTGGTTTGGTGAGTATAACGGTGGAGATGATCGTTGATGCCGAGAATAGCGTTTG 1210
Query 1173 CGAGAAAGCGTTAGCAGTTCTAGACGCGATTTGCGAAACCGAAAAAGGGAGAGAGGAAGT 1232
|| ||||||||||| ||||| ||||||||||||||||| ||| | || |||||||||||
Sbjct 1211 TGAAAAAGCGTTAGCGGTTCTTGACGCGATTTGCGAAACAGAACATGGTAGAGAGGAAGT 1270
Query 1233 GAGTAAAAACGAGTTGGTGATGCCGCTTTTGGTGAAGAAGATACCGAAGGTTTCTGAATC 1292
||| ||||| | |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1271 GAGGAAAAATGCGTTGGTGATGCCGCTTTTGGTGAAGAAGATTGCGAAGGTTTCTGAATT 1330
Query 1293 AGCGACTAGGAGCTCAATGTCAGTGATTTTGAAATTGTGTAAAACAGAAAACGCGTTTGC 1352
|||||||||||||||||||||| |||||||||| |||| ||||||| |||| || ||||
Sbjct 1331 AGCGACTAGGAGCTCAATGTCAATGATTTTGAAGCTGTGGAAAACAGGAAACACGGTTGC 1390
Query 1353 GGTTGAAGAAGTGGTCCGTTTGGGTGCATTTCAAAAGGTGTTGCTTGTGTTACAAGTTGG 1412
||||||||| | ||| |||||||| || ||||| ||||||||||||||||| ||||||||
Sbjct 1391 GGTTGAAGATGCGGTGCGTTTGGGCGCGTTTCAGAAGGTGTTGCTTGTGTTGCAAGTTGG 1450
Query 1413 GTATGGAGAAGAAACTAAGGAGAAAGCAACTGAGTTGTTGAAGATGATGAATACACAAAT 1472
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1451 GTATGGAGAAGAGACTAAGGAGAAAGCGACAGAGTTGTTGAAGATGATGAATACACAAAT 1510
Query 1473 GAAATTGATGAATGGTTGTGTTGATTCTTTAAAGGAGTTTAAGTATATCAAGAAGCCATT 1532
||||||||||| || |||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1511 GAAATTGATGAGTGATTGTGTTGATTCTTTAAAAGAGTTTAAGTATATCAAAAAGCCATT 1570
Query 1533 TTGATGTTTTATAAACGACAGATTAGATTTCAACTAATAATACCAAAAACCTTTGAAAGA 1592
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1571 TTGAC-----ATAAACGACAGATTAGATTTCAACTAATAATAC-AAAAACCTTTGAAAGA 1624
Query 1593 AACATTGAATCTTGGGGATTACGCAAATATTTTGGGCCGCCAACAAGGGT 1642
||||||||||||||||||| | |||||||||||||||| ||||||| |||
Sbjct 1625 AACATTGAATCTTGGGGATCAAGCAAATATTTTGGGCCCCCAACAATGGT 1674
Score = 289 bits (156), Expect = 7e-77
Identities = 192/208 (92%), Gaps = 7/208 (3%)
Strand=Plus/Plus
Query 1 AATCAACTGAAAATTC--TTATTCCTTG-AAAATTCAATGGTCAAAAGTTTTCA-TTTCT 56
|||||||||||| ||| |||||||||| |||||||||||||||||||||| || | ||
Sbjct 1 AATCAACTGAAAGTTCTTTTATTCCTTGAAAAATTCAATGGTCAAAAGTTTCCAGTCCCT 60
Query 57 AAGACCAACCCAGCTTGCAAATTAGACCTAATAAAACCTTCCTCATTCTCTCTTTTCCCC 116
|||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 -AGACCAACACAACTTGCAAATTAGACCTAATTAAACCTTCCTCATTCTCTCTTTTCCCC 119
Query 117 TAATTTTGACCAACAAATATTGACTTAGaaaaaaaaaaCCATTACATATAAATAAAATCT 176
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 120 TAATTTTGACCAACAAATATTGACTTAGAAAAAAAAAACCATTACATATAAATATAATCT 179
Query 177 CATCCCAACC-AACAATCTTTAAACCCA 203
|||||||||| || |||||| |||||||
Sbjct 180 CATCCCAACCCAA-AATCTTAAAACCCA 206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81124080720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5