BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493732
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37540.1 | Symbols: | Eukaryotic aspartyl protease family p... 2435 0.0
AT1G66180.1 | Symbols: | Eukaryotic aspartyl protease family p... 1035 0.0
> AT5G37540.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr5:14912835-14914431 FORWARD LENGTH=1597
Length=1597
Score = 2435 bits (1318), Expect = 0.0
Identities = 1507/1596 (94%), Gaps = 21/1596 (1%)
Strand=Plus/Plus
Query 1 CTCACTCACTCTCACTCTCACaaaaaaaaTGTCTCA-CATTTCAAAACCtctcttcttaa 59
||||||||||||||||| || ||||||||||||| | |||||||||||||||||||||||
Sbjct 1 CTCACTCACTCTCACTCACA-AAAAAAAATGTCT-ACCATTTCAAAACCTCTCTTCTTAA 58
Query 60 aacttctctatatcttcttcttcttcttctGCAACTCAGTTTCTTTATCATGGTCGTCGt 119
|||||||||||| ||||||||||||||||| ||||||||||| | |||||||| ||||
Sbjct 59 AACTTCTCTATA---TCTTCTTCTTCTTCTGCTACTCAGTTTCTCTCTCATGGTCTTCGT 115
Query 120 ctctttctctccattttcctctcacatctcttcgtctcactccaaccacaaactcctcct 179
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 CTCTTTCTCTCCACTTTCCTCTCACATCTCTTCGTCTCACTCCAACCACAAACTCCTCCT 175
Query 180 ccttcaaaacctccctcctctctcGCCGGAACCCATCTCCGTCGTCGTCTCCGTACACTT 239
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 176 CCTTCAAAACCTCCCTCCTTTCTCGCCGGAACCCATCTCCGCCGTCGTCTCCGTACACTT 235
Query 240 TCCGATCAAACTTCAAATACTCAATGGCTCTAATCCTCTCTCTTCCCATAGGAACACCAT 299
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TCCGATCAAACATCAAATACTCAATGGCTCTAATCCTCTCTCTTCCCATAGGAACACCAT 295
Query 300 CTCAATCTCAAGAGCTAGTTCTTGATACCGGAAGCCAACTCTCATGGATCCAGTGTCACC 359
|||| || ||||||||||||||||| |||||||||||||||||||||||||| || || |
Sbjct 296 CTCAGTCACAAGAGCTAGTTCTTGACACCGGAAGCCAACTCTCATGGATCCAATGCCATC 355
Query 360 CCAAGAAAATCAAGAAACCACTTCCTCCTCCAACGACGTCGTTTGATCCTTCTTTATCTT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CCAAGAAAATCAAGAAACCACTTCCTCCTCCAACGACGTCGTTTGATCCTTCTTTATCTT 415
Query 420 CATCGTTCTCCGACTTACCTTGCTCACATCCTCTTTGTAAACC-ACGAATTCCCGATTTT 478
|||||||||||||| |||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct 416 CATCGTTCTCCGACCTACCTTGCTCTCATCCTCTTTGTAAACCTA-GAATTCCCGATTTT 474
Query 479 ACCCTCCCCACTTCTTGTGACTCAAACCGTCTCTGTCACTACTCATACTTCTACGCTGAT 538
||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 475 ACCCTTCCCACGTCTTGTGACTCGAACCGTCTCTGTCACTACTCTTACTTCTACGCTGAT 534
Query 539 GGAACCTTCGCTGAGGGCAATCTCGTCAAAGAAAAATTCACTTTCTCAAACTCCCAAACT 598
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 535 GGAACCTTCGCCGAGGGCAATCTCGTTAAAGAAAAATTCACTTTCTCAAATTCCCAAACT 594
Query 599 ACCCCTCCATTGATTCTTGGTTGCGCTAAAGAGTCAACAGACGAGAAGGGTATTTTGGGA 658
|||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 595 ACCCCTCCTTTGATTCTTGGTTGTGCTAAAGAGTCAACTGACGAGAAGGGTATTTTGGGA 654
Query 659 ATGAATCTTGGTCGTCTTTCTTTTATCTCACAAGCAAAGATATCTAAATTCTCTTATTGT 718
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 655 ATGAATCTTGGTCGTCTTTCTTTTATCTCACAAGCAAAGATTTCTAAATTCTCTTACTGT 714
Query 719 ATCCCAACCCGGTCAAACCGTCCCGGTTTAGCCTCAACCGGTTCATTTTACCTCGGAGAT 778
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 715 ATCCCAACCCGGTCAAACCGTCCCGGTTTAGCCTCAACCGGCTCGTTTTACCTCGGAGAT 774
Query 779 AACCCGAATTCTCGTGGTTTCAAATACGTTTCTCTTTTGACTTTTCCTCAAAGTCAACGC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AACCCGAATTCTCGTGGTTTCAAATACGTTTCTCTTTTGACTTTTCCTCAAAGTCAACGC 834
Query 839 ATGCCGAATCTTGACCCTCTAGCTTACACAGTACCTTTGCTTGGTATCAGAATCGGACAA 898
||||||||||| |||||| |||||||||| ||||| || | ||||||||||||||||||
Sbjct 835 ATGCCGAATCTAGACCCTTTAGCTTACACTGTACCATTACAAGGTATCAGAATCGGACAA 894
Query 899 AAGAGACTCAACATACCCGGTTCTGTTTTTAGACCCGATGCAGGCGGGTCGGGTCAAACC 958
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 895 AAGAGACTCAACATACCCGGTTCTGTTTTTAGACCCGATGCAGGTGGGTCGGGTCAAACC 954
Query 959 ATGGTGGATTCGGGTTCAGAATTTACTCACTTAGTCGACGTGGCGTATGATAAAGTCAAA 1018
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 ATGGTTGATTCGGGTTCTGAATTTACTCACTTAGTCGACGTGGCGTATGATAAAGTCAAA 1014
Query 1019 GAAGAAATAGTGAGGCTTGTGGGGTCAAGATTAAAGAAAGGTTACGTGTACGGTTCAACA 1078
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1015 GAAGAAATAGTGAGGCTTGTGGGATCAAGATTAAAGAAAGGTTACGTGTACGGTTCGACA 1074
Query 1079 GCTGACATGTGTTTCGATGGAAACCATCCGATGGTGATCGGACGGTTGATAGGCGATCTT 1138
|||||||||||||| ||||| |||||| |||||| |||||||||||||||||||||||||
Sbjct 1075 GCTGACATGTGTTTTGATGGTAACCATTCGATGGAGATCGGACGGTTGATAGGCGATCTT 1134
Query 1139 GTGTTTGAGTTTGGGAGAGGTGTTGAGATACTCGTTGAGAAACAAAGGCTTTTGGTTAAC 1198
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1135 GTGTTTGAGTTTGGGAGAGGTGTTGAGATACTCGTTGAGAAACAAAGCCTTTTGGTTAAC 1194
Query 1199 GTTGGAGGTGGGATTCACTGTGTTGGAATCGGACGGTCAAGTATGCTTGGTGCAGCTAGT 1258
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1195 GTAGGAGGTGGGATTCACTGTGTTGGAATCGGACGGTCAAGCATGCTTGGTGCAGCTAGT 1254
Query 1259 AATATAATCGGGAACGTTCATCAGCAAAATCTTTGGGTTGAGTTTGATGT-AGCCAATAG 1317
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1255 AATATAATCGGGAACGTTCATCAGCAAAATCTTTGGGTTGAGTTTGATGTGA-CCAATAG 1313
Query 1318 GAGAGTTGGTTTTAGTAAAGCTGAGTGTAGCAGATTGTCGCCGTGAGAAGGTGAATATT- 1376
|||||||||||||||||||||||||||||| | || | |||||||| |||||||||||
Sbjct 1314 GAGAGTTGGTTTTAGTAAAGCTGAGTGTAG-A--TTATTGCCGTGAGTAGGTGAATATTC 1370
Query 1377 TGTCCACGGTCGTGCGTATG-GTTTTGGAGTTGTGTATGATTATGATGATCGTTGGATGT 1435
| || |||||||||||||| |||||| |||||| | | |||||||||||||||||||||
Sbjct 1371 T-TCTACGGTCGTGCGTATTAGTTTTG-AGTTGTATCTCATTATGATGATCGTTGGATGT 1428
Query 1436 TTGATCGGACGGTGTATATGAA-TCTGGGATTTT-GTGGGTCCCTGTAGAAGGACATCTG 1493
||||||| | |||||||| ||| ||||||||||| ||||||||| ||||||||||| |||
Sbjct 1429 TTGATCGAATGGTGTATAGGAAATCTGGGATTTTTGTGGGTCCC-GTAGAAGGACAACTG 1487
Query 1494 TCAGAAGCAAAGTTCTGAATCTTTATTAAGGCTCTGGAACTATGTATAAATGAATGTACT 1553
|| |||||||| |||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1488 TCTGAAGCAAACTTCTCAATCTTTATTA-GGCTCTGGAACTATGTATAAATGTTTGTACT 1546
Query 1554 ATGATAATTAAAAGCTTGTATATTATATGGTTAATA 1589
||||||||||||||||||||||||| ||||||||||
Sbjct 1547 ATGATAATTAAAAGCTTGTATATTAAATGGTTAATA 1582
> AT1G66180.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr1:24647188-24648813 FORWARD LENGTH=1626
Length=1626
Score = 1035 bits (560), Expect = 0.0
Identities = 1070/1307 (82%), Gaps = 72/1307 (6%)
Strand=Plus/Plus
Query 72 tcttcttcttcttctt-ctGCAACTCA-GTTTCTTTATCATGGTCGTCGtctctttctct 129
|||||||||||||||| || ||||| | || ||| | ||| | | || || |||||
Sbjct 56 TCTTCTTCTTCTTCTTCCT-CAACT-ATGTGTCTCTCTCA---AC--C-TCACTCTCTCT 107
Query 130 ccattttcctctcacatctcttcgtctca-ctcca--accacaaactcctc-ctc-cttc 184
|| | || |||||||||| || || | ||||| |||||||||| ||| | | ||||
Sbjct 108 TCACCTCCCACTCACATCTC-TC-CCT-ATCTCCACCACCACAAACT-CTCAC-CGCTTC 162
Query 185 aaaacctccctcctctctcGCCGGAACCCATCTCCGTCGTCGT-CTCCGTAC-ACTTTCC 242
| |||||||||||||| || ||||||||||||||||| | | || ||| || ||||
Sbjct 163 ACCACCTCCCTCCTCTCCCGGAAAAACCCATCTCCGTCGTC-TCCACCATACAAC-TTCC 220
Query 243 GATCAA-ACTTCAAATACTCAATGGCTCTAATCCTCTCTCTTCCCATAGGAACACCATCT 301
|||||| | |||||||||||||||||||||||| |||| || ||||||||||||||| |
Sbjct 221 GATCAAGA-TTCAAATACTCAATGGCTCTAATCATCTCACTCCCCATAGGAACACCACCA 279
Query 302 CAATCTCAAGAGCTAGTTCTTGATACCGGAAGCCAACTCTCATGGATCCAGTGTCACCCC 361
||| ||||| | | |||||||| || ||||||||||| || |||||||| ||||| |
Sbjct 280 CAAGCTCAACAAATGGTTCTTGACACTGGAAGCCAACTTTCTTGGATCCAATGTCA--TC 337
Query 362 AAGAAAATCAAGAAACCACTTCCTCC---TCCAACGACGTCGTTTGATCCTTCT-TTATC 417
| | || ||| |||||||| |||| || || |||||||| ||| || ||
Sbjct 338 --G----T-AA-AAA--GCTTCCTCCAAAACCAAAAACATCATTTGATCCATCTCTT-TC 386
Query 418 TTCATCGTTCTCCGAC-TTACCTTGCTCACATCCTCTTTGTAAACC-ACGAATTCCCGAT 475
||| || |||| | || || |||||||||||||||||||||||||| | |||||||||||
Sbjct 387 TTCTTCTTTCT-CAACTTTGCCTTGCTCACATCCTCTTTGTAAACCGA-GAATTCCCGAT 444
Query 476 TTTACCCTCCCCACTTCTTGTGACTCAAAC-CGTCTCTGTCACTACTCATACTTCTACGC 534
|||||||| || |||||||||||||| ||| || | ||||||||||| |||||||||||
Sbjct 445 TTTACCCTTCCTACTTCTTGTGACTCCAACAGGT-TATGTCACTACTCTTACTTCTACGC 503
Query 535 TGATGGAACCTTCGCTGAGGGCAATCTCGTCAAAGAAAAATTCACTTTCTCAAACT-CCC 593
||||||||||||||||||||| |||||||| ||||||||| ||||||||||||| | ||
Sbjct 504 TGATGGAACCTTCGCTGAGGGTAATCTCGTTAAAGAAAAAATCACTTTCTCAAA-TACCG 562
Query 594 AAACTACCCCTCCATTGATTCTTGGTTGCGCTAAAGAGTCAACAGACGAGAAGGGTATTT 653
||| ||||||||| |||||||||||||| |||| ||||| | || || | ||| ||||
Sbjct 563 AAATTACCCCTCCTTTGATTCTTGGTTGTGCTACTGAGTCTTCTGATGATAGGGGCATTT 622
Query 654 TGGGAATGAATCTTGGTCGTCTTTCTTTTATCTCACAAGCAAAGATATCTAAATTCTCTT 713
|||||||||| | ||||||||| |||||| | || ||||| ||||| || || |||||||
Sbjct 623 TGGGAATGAACCGTGGTCGTCTCTCTTTTGTTTCTCAAGCTAAGATTTCGAAGTTCTCTT 682
Query 714 ATTGTATCCCAACCC-GGTCAAACCGTCCCGG-TTTAGCCT-CAACCGGTTCATTTTACC 770
|||| ||||| ||| |||||||| ||||| |||| || |||||||||| |||||||
Sbjct 683 ATTGCATCCC-TCCCAAATCAAACCGGCCCGGTTTTA--CTCCAACCGGTTCGTTTTACC 739
Query 771 TCGGAGATAACCCGAATTCTCGTGGTTTCAAATACGTTTCTCTT-TTGACTTTTCCTCAA 829
| || |||||||||||||| | |||||||||||||||||| || |||||||||||| ||
Sbjct 740 TTGGTGATAACCCGAATTCACACGGTTTCAAATACGTTTCT-TTGTTGACTTTTCCTGAA 798
Query 830 AGTCAACGCATGCCGAATCTTGACCCTCTAGCTTACACAGTACCTTTGCTTGGTATCAGA 889
|||||||| |||||||||||||| ||||| |||||||| || ||| || |||| || |||
Sbjct 799 AGTCAACGAATGCCGAATCTTGATCCTCTTGCTTACACTGTTCCTATGATTGGGATTAGA 858
Query 890 ATCGGACAAAAG-AGACTCAACATACCCGGTTCTGTTTTTAGACCCGATGCAGGCGGGTC 948
| || ||| || || ||||| ||||||| ||||| ||||||||||||||||||||
Sbjct 859 TTTGGTTTGAAGAAG-CTTAACATTTCCGGTTCGGTTTTCAGACCCGATGCAGGCGGGTC 917
Query 949 GGGTCAAACCATGGTGGATTCGGGTTCAGAATTTACTCACTTAGTCGACGTGGCGTATGA 1008
||||||||| ||||| |||||||| || || |||||||| ||||| |||| || || ||
Sbjct 918 GGGTCAAACAATGGTTGATTCGGGATCCGAGTTTACTCATTTAGTAGACGCAGCTTACGA 977
Query 1009 TAAAGTCAA-AGAAGAAATAGTGAGGCTTGTGGGGTC-AAGATTAAAGAAAGGTTACGTG 1066
|||||| || || ||| ||| ||| | ||| || | |||||||||||| ||||||||
Sbjct 978 TAAAGT-AAGAGCAGAGATAATGACACGTGT-AGGACGAAGATTAAAGAAGGGTTACGTC 1035
Query 1067 TACGGTTCAACAGCTGACATGTGTTTCGATGGAAACCATCCGATGGTGATCGGACGGTTG 1126
|||||| ||||||||||||||||||||||||||| | | | | ||||| |||||||
Sbjct 1036 TACGGTGGAACAGCTGACATGTGTTTCGATGGAAA-CGT--GGCGATGATCCCACGGTTG 1092
Query 1127 ATAGGCGATCTTGTGTTTGAGTTTGGGAGAGGTGTTGAGATACTCGTTGAGAAACAAAGG 1186
||||| ||||||||||||| ||| ||||| ||||||||||| ||| |||| | |||
Sbjct 1093 ATAGGAGATCTTGTGTTTGTGTTCACTAGAGGAGTTGAGATACTTGTTCCGAAAGAGAGG 1152
Query 1187 CTTTTGGTTAACGTTGGAGGTGGGATTCACTGTGTTGGAATCGGACGGTCAAGTATGCTT 1246
||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 1153 GTTTTGGTTAACGTAGGAGGTGGGATTCATTGCGTTGGAATCGGACGGTCGAGTATGCTT 1212
Query 1247 GGTGCAGCTAGTAATATAATCGGGAACGTTCATCAGCAAAATCTTTGGGTTGAGTTTGAT 1306
|| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1213 GGAGCTGCTAGTAATATAATCGGGAACGTTCATCAGCAAAATCTTTGGGTTGAGTTCGAT 1272
Query 1307 GT-AGCCAATAGGAGAGTTGGTTTTAG-TAAAGCTGAGTGTAGCAGA 1351
|| | ||||||| ||||| ||||| | ||||||||| |||||||||
Sbjct 1273 GTGA-CCAATAGAAGAGTGGGTTTC-GCTAAAGCTGATTGTAGCAGA 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78463451835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5