BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493733
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37550.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1203 0.0
> AT5G37550.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G66190.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:14918901-14919868 REVERSE LENGTH=968
Length=968
Score = 1203 bits (651), Expect = 0.0
Identities = 799/869 (92%), Gaps = 16/869 (2%)
Strand=Plus/Plus
Query 1 TTTCTTAGCCTTGCACTCTATTAACGTGTCCCCTCCAAATTCCACAAACCCAAAAAAGAT 60
||||| ||| || | |||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 2 TTTCTAAGCATTTCCCTCTATTAACGTGTCCACTCCAAATTCCACAAACCCAAAAAACAT 61
Query 61 TATAATCAATGAACTATATGCTTCCGTTCGCCAACTACTACATTTCAACACCAATTATGT 120
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 62 TATAATCAATGAAC--GATGCTTCCATTCGCCAACTACTACATTTCAACACCAATTATGT 119
Query 121 CCGAGAAGAAAAACTTCACCAGAAGCAGTAACAATAGGAGAAAGAAGAGATGGACACCGA 180
|||||||||| | | ||||||||||| |||||||||| ||||||||||||||| ||||||
Sbjct 120 CCGAGAAGAAGAGCATCACCAGAAGCCGTAACAATAGTAGAAAGAAGAGATGGTCACCGA 179
Query 181 CACTCTTCACCGGAGGCGGAGGA-G--GAGGAAGAGCAGGAGATGATGAGCTGGCGACAG 237
| ||||| ||||||| |||||| | ||||| ||| |||||||||||||||||||||||
Sbjct 180 CGCTCTTTGCCGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGATGATGAGCTGGCGACAG 239
Query 238 TGAAAGCTGCTGCGTGGGCTTGGTACCAAAGACACGAAGGAAAACCAATGATGAGAGAGT 297
|||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 240 TGAAAGCTGCGGCGTGGGCTTGGTACCAAAGACACGAAGGAAAGCCGATGATGAGAGAGT 299
Query 298 TCGATCTCACTACAAGAGCCACAAGAACACCTCGACCTTCCCGGTATAAGCTCGAAGCCA 357
|||||||| | | |||||||| |||||||||||||||||| |||||||||||||| ||||
Sbjct 300 TCGATCTCTCGAAAAGAGCCATAAGAACACCTCGACCTTCGCGGTATAAGCTCGAGGCCA 359
Query 358 GCAAGAACATGATCCTCTCTGAGAATAAGGTTTCAAAACCACACTCTAATCATTTGATGC 417
||||| |||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 360 ACAAGACCATGATCCTCTCCGAGAATAAGGTTTCTAAACCACACTCTAATCATTTTTTGC 419
Query 418 GTGGAGATCAAGAAACCAAGTTCTCTAGTCTTCTTGACCCTTATGAGATCAAGAGCATCT 477
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 420 GTGGAGATCAAGAAACCAAGTTGTCTAGTCTTCTTGATTCTTATGAGATCAAGAGCATCT 479
Query 478 CTAAGAGAATTGACGAGGGTTCGTTACCAACTAGTGTTTTCCGGAATGGTCATGGTCATC 537
||||||| ||||| ||||||||||||||||||| || |||| |||||| ||||||||| |
Sbjct 480 CTAAGAGGATTGATGAGGGTTCGTTACCAACTATTGGTTTCTGGAATGATCATGGTCAAC 539
Query 538 ATTATGATCATAATATGTTGCAGAAGAAGCTTGAATATGATAGTAAGAAAGAGAATGGGT 597
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 540 ATTATGATCATAATATGTTGCAGAAGAAGCTTGAATATGATAGTAAGCAAGAGAATGGGT 599
Query 598 TGGTGaaaaaaaTGAGCATTAGAAATTTGTGGAAAGGAATGATTCTGATGGCTCCAAGGA 657
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 600 TGGTGAAAAAAATGAGCATTAGAAATTTGTGGAAAGGAATGATTATGATGGCTCCAAGGA 659
Query 658 CGGTTTGTGGAAGAAGTGATGATGTGGATCTTGGGGCATATC---GGGTTGGTCCAAGAA 714
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 660 CGGTTTGTGGAAGAAGTGATGACGTGGATCTTGGGGCATATCATCGGGTTGGTCCAAGAA 719
Query 715 CAGAGAAGGTTGCACCGACGAGTGTCAATATGCGAACCGGCCGTCGCTAACTCTAT---- 770
|| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 720 CAAAGAAGGTTGCACCGACGAGTGTCAATATGCGTACCGGCCGACGCTAACTCTATGTCT 779
Query 771 --A--GTCTCTACTCTCTAGTTATTAAGGAGCTAAAATATGTGTTTAGACATTATTAATG 826
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTATAGTATCTACTCTCTAGTTATTAAGGAGCTAAAATATGTGTTTAGACATTATTAATG 839
Query 827 CTAAAAGGACTTCTTTTCCATAACATTAA 855
|||||||||||||||||||| || |||||
Sbjct 840 CTAAAAGGACTTCTTTTCCACAATATTAA 868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41694342010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5