BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493742
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37660.2 | Symbols: PDLP7 | plasmodesmata-located protein 7 ... 1738 0.0
> AT5G37660.2 | Symbols: PDLP7 | plasmodesmata-located protein
7 | chr5:14959797-14961585 FORWARD LENGTH=1362
Length=1362
Score = 1738 bits (941), Expect = 0.0
Identities = 1223/1351 (91%), Gaps = 52/1351 (4%)
Strand=Plus/Plus
Query 1 ATTGCTAATGTCTTTCTCTCCTTTTCCATTAATACCAATGGCAAAACTAAGGAACATCAT 60
||||||| ||||||||||||||| |||| |||| ||||||||||||||||||||||||||
Sbjct 15 ATTGCTATTGTCTTTCTCTCCTTCTCCACTAATGCCAATGGCAAAACTAAGGAACATCAT 74
Query 61 CAAAActctctccttcttcttctttctcctcgccgcaaccgctccttcactctcctccgc 120
||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||| ||
Sbjct 75 CAAAACTCTCTCCATCTTCTTCTTTCTCATCGCAGCAACCGCTCCTTCACTCTCCTCTGC 134
Query 121 cacctccgcCACAGACACCTTCGTCTTCGGCGGCTGCTCCCAGCAAAAATTCTCTCCGGC 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 135 CACCTCCGCCACAGACACCTTCGTCTTTGGCGGCTGCTCCCAGCAAAAATTCTCTCCGGC 194
Query 181 GTCTGCTTATGAGTCAAACCTCAACTCTCTTCTCACTTCTCTAGTTAACTCAGCCACATA 240
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 195 GTCTGCGTATGAGTCAAACCTCAACTCTCTTCTTACTTCTCTAGTTAACTCAGCCACATA 254
Query 241 TTCTTCCTACAACAACTTCACCATCATGGGCTCTTCCTCCTCGGACACAGCCCATGGCCT 300
||||||||||||||||||||||||||||||||||| ||||| |||||||| | ||||||
Sbjct 255 CTCTTCCTACAACAACTTCACCATCATGGGCTCTTCATCCTCCGACACAGCACGTGGCCT 314
Query 301 CTTCCAATGCCGGGGCGACCTCTCTATGCCGGACTGTGCCACGTGTGTGGTACGAGCCGT 360
|||||||||||| || |||||||| ||||||||||| ||||||||||||| ||| |||||
Sbjct 315 CTTCCAATGCCGCGGTGACCTCTCCATGCCGGACTGCGCCACGTGTGTGGCACGTGCCGT 374
Query 361 CTCTCAAGTAGGTCCTCTTTGCCCTTTCACTTGTGGTGGAGCCCTCCAACTAGCTGGCTG 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 375 CTCTCAAGTAGGTCCTCTTTGCCCTTTCACTTGTGGTGGAGCCCTCCAGCTAGCTGGCTG 434
Query 421 CTACATCAAGTACGATAACATCAGCTTCCTTGGCCAAGAAGACAAGACCGTTGTCCTAAA 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 CTACATCAAATACGATAACATCAGCTTCCTTGGCCAAGAAGACAAGACCGTTGTCCTAAA 494
Query 481 GAAGTGTGGACCCTCTGAGGGTTATAACACCGACGGCATCAGCCGGAGAGACGCGGTTCT 540
|||||||||| |||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 495 GAAGTGTGGATCCTCTGAGGGTTATAATACCGACGGTATCAGCCGGAGAGACGCAGTTCT 554
Query 541 CACGGAGCTAGTCAACGGTGGAGGGTATTTTCGAGCTGGAGGGTCCGGTGATGTTCAAGG 600
||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 555 CACGGAGCTAGTCAATGGCGGAGGGTATTTTCGAGCCGGAGGGTCCGGTGATGTTCAAGG 614
Query 601 TATGGGACAGTGTGTAGGAGATCTAACGGTGTCGGAGTGCCAAGATTGTCTAGGAACGGC 660
||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 615 TATGGGACAATGTGTAGGAGATCTAACGGTGTCAGAGTGCCAAGATTGTTTAGGAACGGC 674
Query 661 CATCGGACGGCTTAAGAATGATTGTGGCACGGCCGTATTCGGAGACATGTTCTTGGCTAA 720
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 675 CATTGGACGGCTTAAGAATGATTGTGGCACGGCCGTCTTCGGAGACATGTTCTTGGCTAA 734
Query 721 GTGTTACGCAAGATATTCCACTGATGGTGCACAACACTATGCCAAGTCTCATAGTTATAA 780
||||||||| |||||||| ||||||||||||||||| || ||||||||||||| ||||||
Sbjct 735 GTGTTACGCTAGATATTCAACTGATGGTGCACAACATTACGCCAAGTCTCATAATTATAA 794
Query 781 AACAAACTACGGTGGAGAAAGGACATTCGCGATCATCATAGGACTACTAGCTGCGGTTGT 840
|||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 795 AACAAACTACGGAGGAGAAAAGACGTTCGCGATCATCATAGGACTACTAGCTGCGGTTGT 854
Query 841 TCTTCTAATTATCTTCCTTCTTTTCCTCAGAGGCGTTTGCAGTCGCGGAGGTGATTTCTA 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 TCTTCTAATTATCTTCCTTCTTTTCCTCAGAGGCGTTTGCAGTCGCGGAGGTGATTTCTC 914
Query 901 TTTCTTACATATTTTTA-T-T-ATTTAATTTCTTTCATAATATATGGAAAA--CACACaa 955
| ||||||||| ||||| | | ||||||||||||||||||||||||||||| |||||||
Sbjct 915 TATCTTACATAGTTTTACTCTTATTTAATTTCTTTCATAATATATGGAAAATACACACAA 974
Query 956 aaa-a---aaTAT-TTG-TTACATGCATATGCCTTATGATAAAGGTACGTAGCAGTCAAT 1009
||| | || || || |||||||||| | || |||||||| ||||||| |||||||
Sbjct 975 AAATATCCAAAATGTTTCTTACATGCATG-GTCTCATGATAAATATACGTAGTAGTCAAT 1033
Query 1010 CTGATAATAATGAATTGTTATATGTAATATGCTTGCACGTGTATTTTACAATTAGGTGAT 1069
||||| |||||||| ||||||||||||||||||| || |||||| |||| ||||||| |
Sbjct 1034 CTGATCATAATGAAATGTTATATGTAATATGCTTCCATGTGTATCATACAGTTAGGTGGT 1093
Query 1070 TGTTAGGATATTCAAAGTTTTA--TAA-A-T-----ATAAA---A---TTTTCAGGTAAA 1114
| |||| ||||||||||||||| ||| | | ||||| | ||||||||||||
Sbjct 1094 TATTAGTATATTCAAAGTTTTAAGTAATACTTGTTCATAAATTTAAAATTTTCAGGTAAA 1153
Query 1115 TAAATGTCAAAGTTCTGAGGATTCGCAAGAGCGTGGATCTCAAAG-ACGCA-AAAATTCC 1172
|||||||||||||||||| || |||||||| |||||||||||||| || || ||||| ||
Sbjct 1154 TAAATGTCAAAGTTCTGAAGAATCGCAAGAACGTGGATCTCAAAGGAC-CAGAAAAT-CC 1211
Query 1173 AGATGAGATGTATATC-GCTTTGGATTCTGTCAAA---A---CTTTAAt-ttttt-t--c 1221
|||||||||| |||| ||||||||||||||||| | |||| | ||||| | |
Sbjct 1212 AGATGAGATGCATATTTGCTTTGGATTCTGTCAACGTTATTTCTTTTTTCTTTTTCTAAC 1271
Query 1222 -tttt-----tt-t---GTTTCGATTGTTGTTACATAATACTTGTGATAATAATTATTTT 1271
|||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 GTTTTAAAAATTATTTTGTTTCGATTGTTGTTACATAATACTTGTGATAATAATTATTTT 1331
Query 1272 AAATGAAAAAGAGATATGGAAAGGAAGTCTT 1302
||||| |||||||||| | ||||||||||||
Sbjct 1332 AAATGGAAAAGAGATAAGAAAAGGAAGTCTT 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64055895420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5