BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493744
Length=482
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37670.1 | Symbols: | HSP20-like chaperones superfamily pro... 710 0.0
> AT5G37670.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr5:14968991-14969509 FORWARD LENGTH=519
Length=519
Score = 710 bits (384), Expect = 0.0
Identities = 452/485 (93%), Gaps = 3/485 (1%)
Strand=Plus/Plus
Query 1 AAAGATTGAAGAATATGGCAGACAGAGGAATATTCTTGTATCCATTTAGAAGATTCCAAG 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 31 AAAGATAGAAGAATATGGCAGACAGAGGAATATTCTTGTATCCATTTAGAAGATTCCAAG 90
Query 61 AATGGTCAAGATCCACGGCTCTTATTGATTGGATGGAATCTTCCAACTCTCATATCTTCA 120
||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 91 AATGGTCAAGATCAACGGCTCTGATTGATTGGATGGAATCAAACAACTCTCATATCTTCA 150
Query 121 AGATCAATGTTCCTGGTTACAACAAGGAAGACATAAAAGTGCAGATTGAAGAAGGAAATG 180
||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||| ||||
Sbjct 151 AGATCAACGTTCCTGGTTACAACAAAGAAGACATCAAAGTACAGATTGAAGAAGGGAATG 210
Query 181 TTTTGAGTATAAGAGGAGAAGGAATAAAGGAAGATAAGAAAGAGAATTTGGTTTGGCATG 240
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |
Sbjct 211 TTTTGAGTATAAGAGGAGAAGGAATAAAGGAAGAGAAGAAGGAGAATTTGGTGTGGCACG 270
Query 241 TGGCGGAGAGAGAAGCTTTTTCCGGTGGAGG---TGAGTTTTTGCGGCGGATTGAGTTGC 297
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 271 TGGCGGAGAGAGAAGCTTTTTCCGGTGGTGGAAGTGAGTTTTTGCGGCGGATTGAGTTGC 330
Query 298 CGGAGAATGTGAAAGTCGACCAAGTTAAAGCTTACGTGGAGAATGGTGTTCTTACTGTTG 357
|||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 331 CGGAGAATGTGAAAGTTGATCAAGTTAAAGCTTACGTGGAGAATGGTGTTCTTACAGTTG 390
Query 358 TTGTTCCCAAGGACACGTCATCCAAATCGTCTAAAATTAGAAATGTTAATATTACTAGTA 417
||||||| |||||||| ||||| |||||||||||| |||| ||||||||||||||||| |
Sbjct 391 TTGTTCCTAAGGACACTTCATCGAAATCGTCTAAAGTTAGGAATGTTAATATTACTAGCA 450
Query 418 AGCTTTGATGTCTTAACCGAAATAAACCGGGTTTTGGTTTTCTTAAGATGAATAAAATTG 477
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 451 AGCTTTGATGTCTAAACCGGGTTAAACCGGTTTTTGGTTTTCTTAAGATGAATAAAATTG 510
Query 478 GACTT 482
|||||
Sbjct 511 GACTT 515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22957005179
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5